mRNA_E-fasciculatus_F_contig10515.412.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10515.412.1
Unique NamemRNA_E-fasciculatus_F_contig10515.412.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10515.412.1 vs. uniprot
Match: A0A6H5L1C0_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.360e-21
Identity = 95/111 (85.59%), Postives = 97/111 (87.39%), Query Frame = 1 
Query:    1 MRVAVVSGAALRSLAVLGARQGRGRATVAFLAGAGRQQQPWTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMTSMSASSSAPEVLNEAAAGVCAEVI 333
            MRVAVVSGAALRSLAVLGA QGRGRATVAFLAGAGRQQQPWT+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          AM SMSASS+ PE LNEAAAGVCAEVI
Sbjct:    1 MRVAVVSGAALRSLAVLGAGQGRGRATVAFLAGAGRQQQPWTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGAVSAKQRAMASMSASST-PEELNEAAAGVCAEVI 110
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BLAST of mRNA_E-fasciculatus_F_contig10515.412.1 vs. uniprot
Match: D7FJP8_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP8_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 9.530e-14
Identity = 88/112 (78.57%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:    1 MRVAVVSGAALRSLAVLGARQGRGRATVAFLAGAGRQQQPWTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMTSMSASSSAPEVLNEAAAGVCAEVIT 336
            MRVAVVSGAALRSLAVLGARQGRGRATVAFLAGAGRQQ+ WT+      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               NEAAAGVCAEVIT
Sbjct:    1 MRVAVVSGAALRSLAVLGARQGRGRATVAFLAGAGRQQRSWTTSALVATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEAAAGVCAEVIT 112
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10515.412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1C0_9PHAE2.360e-2185.59Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
D7FJP8_ECTSI9.530e-1478.57Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10515contigE-fasciculatus_F_contig10515:3452..4755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3e-11
Seed eggNOG ortholog2880.D7FJP8
KEGG rclassRC00004,RC00137
KEGG koko:K01069
KEGG ReactionR01736
KEGG Pathwayko00620,map00620
EggNOG free text desc.hydroxyacylglutathione hydrolase activity
EggNOG OGsCOG0491@1,KOG0813@2759
EC3.1.2.6
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorymitochondrion
Exons2
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927549.7991745-CDS-E-fasciculatus_F_contig10515:3451..35481622927549.7991745-CDS-E-fasciculatus_F_contig10515:3451..3548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10515 3452..3548 +
1695995590.4778118-CDS-E-fasciculatus_F_contig10515:3451..35481695995590.4778118-CDS-E-fasciculatus_F_contig10515:3451..3548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10515 3452..3548 +
1622927549.8162706-CDS-E-fasciculatus_F_contig10515:4516..47551622927549.8162706-CDS-E-fasciculatus_F_contig10515:4516..4755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10515 4517..4755 +
1695995590.491039-CDS-E-fasciculatus_F_contig10515:4516..47551695995590.491039-CDS-E-fasciculatus_F_contig10515:4516..4755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10515 4517..4755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10515.412.1prot_E-fasciculatus_F_contig10515.412.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10515 3452..4755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10515.412.1

>prot_E-fasciculatus_F_contig10515.412.1 ID=prot_E-fasciculatus_F_contig10515.412.1|Name=mRNA_E-fasciculatus_F_contig10515.412.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
MRVAVVSGAALRSLAVLGARQGRGRATVAFLAGAGRQQQPWTSSALVAAT
GGSSSSSSTFGRKAASCGAASQAARGGAGSANQQAMTSMSASSSAPEVLN
EAAAGVCAEVIT
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mRNA from alignment at E-fasciculatus_F_contig10515:3452..4755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10515.412.1 ID=mRNA_E-fasciculatus_F_contig10515.412.1|Name=mRNA_E-fasciculatus_F_contig10515.412.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1304bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10515:3452..4755+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCGTTGCTGTGGTGTCTGGAGCAGCGCTACGATCTCTTGCTGTTCT
CGGTGCACGCCAAGGCCGGGGACGGGCGACTGTTGCCTTCCTTGCAGGTA
AGCTTTTTTATCAACTAACAACCCAACCAGGACATCGGGGTAGTGTGTCG
TATCAACAACATGTACTAAAACAGCAGTGTGACGTACGATATCACCCCCC
CTCGTGCACGTACAGCGTGTGTCGTTCATGACCCAGTAGAGAGAACTGCA
GGCAGAAGGGGATGTTCTGTAGTTTGTACCACAAGGCCCTCCTTCAGGAG
TTTGGCGGTTTGTCAAACTTGGATTGCCTCCCGGGGGCGACGCAAGAGAA
CATGGCCAATGTTATCACGGTTGCATCTCAAATATGCGGTAGTGGCCCGG
TTATAGTAACAAGTGCGGGATAGTGTTGGGGGGCGTGTAGGAAGGAAGCA
CAGATAAAACACAGACGATCTGTAGAACCAGATGAATCCTCTACTACCCT
CCGTCTCTGCACGCGCTAAATTAGTAGGCTCAAGCCACTGATAGAACGAA
AGACAACCTGTCTGTGTTGCATAGACTAGTAAGCATTCATGTAGATACTC
CATGGACATTTTTTTTATATTGATGCCGAATACAACAGCACGGTGCCCCC
GTTAGACGAGCAATGATGTCATATGGTGCTGTCGGACATTTGCGATGACA
CAAGAGTCAGTGATGAAAGCAGCGAAATAACGTGGAATAAGTTTTGATGG
GTTTCTGTATAGACTTCGCCAGGCTTGCTCGTCGCGGAACGCATCCCCGC
GAAATAGAGCCAGTTTTGGGCGTCGAGCACACGCGCCACGGTTGCCTGTT
GAGCTCCGGGGCATGCGCGGCAATGCACCGATGAGGGTAGTCGTCAACAC
TCCAGCCACTAGACATCAAGCACAGGGTGTGTTCTACATCCTCGGATATG
TTTGTGTGTTGGATGCAACAAGAACCGGTTACAACCTCGGCCCCAATCCC
TTTCGTCGGCTTGTTCTTTGTGCCCCGAGTGGGCGTCTAATCTTGATATT
TTCGTGTGCGTACAGGGGCAGGACGACAGCAGCAGCCGTGGACGTCTTCC
GCCCTCGTAGCGGCTACCGGAGGTAGCTCTAGCAGCTCTTCGACCTTCGG
CCGCAAGGCCGCCAGCTGTGGCGCTGCCTCTCAAGCGGCACGCGGCGGAG
CCGGGTCGGCCAACCAACAGGCAATGACGTCAATGTCGGCTTCTTCTTCC
GCGCCCGAAGTGCTCAACGAAGCCGCCGCCGGCGTGTGCGCTGAAGTCAT
CACA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10515:3452..4755+

>mRNA_E-fasciculatus_F_contig10515.412.1 ID=mRNA_E-fasciculatus_F_contig10515.412.1|Name=mRNA_E-fasciculatus_F_contig10515.412.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10515:3452..4755+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCGTTGCTGTGGTGTCTGGAGCAGCGCTACGATCTCTTGCTGTTCT
CGGTGCACGCCAAGGCCGGGGACGGGCGACTGTTGCCTTCCTTGCAGATG
CGCGTTGCTGTGGTGTCTGGAGCAGCGCTACGATCTCTTGCTGTTCTCGG
TGCACGCCAAGGCCGGGGACGGGCGACTGTTGCCTTCCTTGCAGGGGCAG
GACGACAGCAGCAGCCGTGGACGTCTTCCGCCCTCGTAGCGGCTACCGGA
GGTAGCTCTAGCAGCTCTTCGACCTTCGGCCGCAAGGCCGCCAGCTGTGG
CGCTGCCTCTCAAGCGGCACGCGGCGGAGCCGGGTCGGCCAACCAACAGG
CAATGACGTCAATGTCGGCTTCTTCTTCCGCGCCCGAAGTGCTCAACGAA
GCCGCCGCCGGCGTGTGCGCTGAAGTCATCACAGGGCAGGACGACAGCAG
CAGCCGTGGACGTCTTCCGCCCTCGTAGCGGCTACCGGAGGTAGCTCTAG
CAGCTCTTCGACCTTCGGCCGCAAGGCCGCCAGCTGTGGCGCTGCCTCTC
AAGCGGCACGCGGCGGAGCCGGGTCGGCCAACCAACAGGCAATGACGTCA
ATGTCGGCTTCTTCTTCCGCGCCCGAAGTGCTCAACGAAGCCGCCGCCGG
CGTGTGCGCTGAAGTCATCACA
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