mRNA_E-fasciculatus_F_contig15993.4101.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15993.4101.1
Unique NamemRNA_E-fasciculatus_F_contig15993.4101.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15993.4101.1 vs. uniprot
Match: D7G822_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.090e-11
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 2 
Query: 1001 HLVGGDGPSPRNAHTHI---GFSFWPLY-----LRVSLEVL---QTIGAPGGELIGKPTDGIPLWWQHSRVCVSCRI 1198
            HLVG +GPSPR+A ++    G+ F  ++     LR+S EVL   Q  GAPGG   GKPTDGI LW QH RVCVSCR+
Sbjct:  426 HLVGDNGPSPRDARSYSPGGGYRFLFIFHLLAPLRLSPEVLFFRQMFGAPGGPFAGKPTDGIQLW-QHPRVCVSCRV 501
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15993.4101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G822_ECTSI3.090e-1154.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15993contigE-fasciculatus_F_contig15993:1491..2875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1198
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15993.4101.1prot_E-fasciculatus_F_contig15993.4101.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15993 1859..2488 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928066.2713637-UTR-E-fasciculatus_F_contig15993:1490..16401622928066.2713637-UTR-E-fasciculatus_F_contig15993:1490..1640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15993 1491..1640 -
1695995809.1289413-UTR-E-fasciculatus_F_contig15993:1490..16401695995809.1289413-UTR-E-fasciculatus_F_contig15993:1490..1640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15993 1491..1640 -
1622928066.2852168-UTR-E-fasciculatus_F_contig15993:1827..18581622928066.2852168-UTR-E-fasciculatus_F_contig15993:1827..1858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15993 1828..1858 -
1695995809.13854-UTR-E-fasciculatus_F_contig15993:1827..18581695995809.13854-UTR-E-fasciculatus_F_contig15993:1827..1858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15993 1828..1858 -
1622928066.3074708-UTR-E-fasciculatus_F_contig15993:2488..28751622928066.3074708-UTR-E-fasciculatus_F_contig15993:2488..2875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15993 2489..2875 -
1695995809.1729796-UTR-E-fasciculatus_F_contig15993:2488..28751695995809.1729796-UTR-E-fasciculatus_F_contig15993:2488..2875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15993 2489..2875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928066.2954042-CDS-E-fasciculatus_F_contig15993:1858..24881622928066.2954042-CDS-E-fasciculatus_F_contig15993:1858..2488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15993 1859..2488 -
1695995809.161137-CDS-E-fasciculatus_F_contig15993:1858..24881695995809.161137-CDS-E-fasciculatus_F_contig15993:1858..2488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15993 1859..2488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15993.4101.1

>prot_E-fasciculatus_F_contig15993.4101.1 ID=prot_E-fasciculatus_F_contig15993.4101.1|Name=mRNA_E-fasciculatus_F_contig15993.4101.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=210bp
MLKWLREHDCPWDLVHDGGPCAGAARRGHLEVVKWARSHGCPWDVRTCLA
AARGGHLHVLQWARENGCDWDSGTCAGAAWGGHLELLRWARANGCPWDSR
ACSLAASRGDTRMLKWLRGQGCPWDSNTCTQAAAHGHLRVLIWALANGCS
WDGRLKHAAGAKGYGFIRRWVENHVWRNTRKRPFSSISSCDSGRSLSTAL
NRHLSLGWW*
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mRNA from alignment at E-fasciculatus_F_contig15993:1491..2875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15993.4101.1 ID=mRNA_E-fasciculatus_F_contig15993.4101.1|Name=mRNA_E-fasciculatus_F_contig15993.4101.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1385bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15993:1491..2875- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCCGCCTGGGGTGGACACCTTGAGGTCCTCAAATGGCTTCGCCAACA
GGGCTGTGGCTGGGATGAAGAAACATGTCAGCTGGCCGCCCACGGACGTC
ATTTCCATGTCCTGAAATGGGTGAGGTCCCCGACCGAGAACTTGCCGACG
GGGGCCGTGGACCCGAATGCATGCCCTTGGGACGAAGACGCGTGCGCCTG
TGCTGCCATAGTCGGGTGCCACGACACTGTGAAGTGGCTTCGGACAAACG
GCTGCCCTTGGGACCAAGTAACATGCGCATATGCCGCAGCTGGCGGATTC
TTCGGCATCCTTGAGTGGGCAGTTGCCGAAGGATGCCCTTTGGACAGCGA
ATCCTGTTTCTGGGCCGCTGAGACAGGAGATTTACGAATGCTTAAGTGGC
TACGGGAGCACGACTGCCCTTGGGACCTTGTGCATGACGGGGGTCCATGC
GCGGGGGCTGCACGTCGCGGCCATCTTGAAGTCGTAAAGTGGGCGAGGAG
TCATGGATGTCCATGGGACGTGCGGACATGTTTGGCGGCAGCGAGAGGCG
GGCACCTTCACGTGTTGCAGTGGGCCCGAGAAAATGGGTGCGACTGGGAC
AGTGGCACTTGTGCGGGGGCTGCCTGGGGGGGGCACCTTGAGCTTTTGCG
CTGGGCACGAGCGAACGGCTGTCCTTGGGATAGTCGGGCTTGCTCACTTG
CGGCTAGCAGAGGGGACACGAGGATGCTGAAATGGCTGCGTGGACAGGGT
TGCCCTTGGGACAGCAACACCTGCACGCAGGCAGCCGCGCACGGGCACCT
CAGAGTGCTAATTTGGGCCCTCGCCAATGGTTGCTCATGGGACGGGCGGC
TCAAACACGCGGCAGGCGCCAAGGGCTACGGCTTTATTCGTCGCTGGGTG
GAAAATCACGTTTGGCGGAACACTCGCAAGCGACCATTCAGCTCGATATC
GAGTTGCGATTCTGGGAGAAGTTTGTCGACAGCGTTAAATAGGCACCTGT
CACTTGGTTGGTGGTGACGGACCCTCGCCAAGGAATGCCCACACCCACGT
GACCTGAGAAAAGCAGGAGCGACCGAGCCCTAGATGAAGGAAATTGACGG
TAAAGGGCGTGAAGTTGATACCGTAATATCCTTGAGAACGCCCCCCCCCA
TGAGGTAGCCCCCCCCGAAAAACAATCGCAGGGAGGGTACCCCAACAACT
CTCAGTTAGCCCCGGGAGTATCGGTTTTTGCTTAGATAGGTTTCAGTTTT
TGGCCCCTCTACCTTAGAGTTAGCCTCGAGGTGTTGCAAACAATTGGGGC
TCCCGGCGGGGAATTGATTGGCAAACCCACGGACGGCATTCCATTGTGGT
GGCAGCATTCGCGTGTTTGTGTCAGTTGCCGTATA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15993:1491..2875-

>mRNA_E-fasciculatus_F_contig15993.4101.1 ID=mRNA_E-fasciculatus_F_contig15993.4101.1|Name=mRNA_E-fasciculatus_F_contig15993.4101.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1260bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15993:1491..2875- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTAAGTGGCTACGGGAGCACGACTGCCCTTGGGACCTTGTGCATGA
CGGGGGTCCATGCGCGGGGGCTGCACGTCGCGGCCATCTTGAAGTCGTAA
AGTGGGCGAGGAGTCATGGATGTCCATGGGACGTGCGGACATGTTTGGCG
GCAGCGAGAGGCGGGCACCTTCACGTGTTGCAGTGGGCCCGAGAAAATGG
GTGCGACTGGGACAGTGGCACTTGTGCGGGGGCTGCCTGGGGGGGGCACC
TTGAGCTTTTGCGCTGGGCACGAGCGAACGGCTGTCCTTGGGATAGTCGG
GCTTGCTCACTTGCGGCTAGCAGAGGGGACACGAGGATGCTGAAATGGCT
GCGTGGACAGGGTTGCCCTTGGGACAGCAACACCTGCACGCAGGCAGCCG
CGCACGGGCACCTCAGAGTGCTAATTTGGGCCCTCGCCAATGGTTGCTCA
TGGGACGGGCGGCTCAAACACGCGGCAGGCGCCAAGGGCTACGGCTTTAT
TCGTCGCTGGGTGGAAAATCACGTTTGGCGGAACACTCGCAAGCGACCAT
TCAGCTCGATATCGAGTTGCGATTCTGGGAGAAGTTTGTCGACAGCGTTA
AATAGGCACCTGTCACTTGGTTGGTGGTGAATGCTTAAGTGGCTACGGGA
GCACGACTGCCCTTGGGACCTTGTGCATGACGGGGGTCCATGCGCGGGGG
CTGCACGTCGCGGCCATCTTGAAGTCGTAAAGTGGGCGAGGAGTCATGGA
TGTCCATGGGACGTGCGGACATGTTTGGCGGCAGCGAGAGGCGGGCACCT
TCACGTGTTGCAGTGGGCCCGAGAAAATGGGTGCGACTGGGACAGTGGCA
CTTGTGCGGGGGCTGCCTGGGGGGGGCACCTTGAGCTTTTGCGCTGGGCA
CGAGCGAACGGCTGTCCTTGGGATAGTCGGGCTTGCTCACTTGCGGCTAG
CAGAGGGGACACGAGGATGCTGAAATGGCTGCGTGGACAGGGTTGCCCTT
GGGACAGCAACACCTGCACGCAGGCAGCCGCGCACGGGCACCTCAGAGTG
CTAATTTGGGCCCTCGCCAATGGTTGCTCATGGGACGGGCGGCTCAAACA
CGCGGCAGGCGCCAAGGGCTACGGCTTTATTCGTCGCTGGGTGGAAAATC
ACGTTTGGCGGAACACTCGCAAGCGACCATTCAGCTCGATATCGAGTTGC
GATTCTGGGAGAAGTTTGTCGACAGCGTTAAATAGGCACCTGTCACTTGG
TTGGTGGTGA
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