mRNA_E-fasciculatus_F_contig15987.4099.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15987.4099.1
Unique NamemRNA_E-fasciculatus_F_contig15987.4099.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15987.4099.1 vs. uniprot
Match: D7FM85_ECTSI (KH_dom_type_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM85_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.610e-24
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    7 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 144
            QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR
Sbjct:   11 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 56
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BLAST of mRNA_E-fasciculatus_F_contig15987.4099.1 vs. uniprot
Match: A0A6H5KV61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV61_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.200e-20
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    7 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 144
            QVAIPDHLVGVILGK GATVIDMQNQTGARIQVSQRGEYIPGTTNR
Sbjct: 1058 QVAIPDHLVGVILGKRGATVIDMQNQTGARIQVSQRGEYIPGTTNR 1103
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BLAST of mRNA_E-fasciculatus_F_contig15987.4099.1 vs. uniprot
Match: U6DTT7_NEOVI (RNA-binding protein Nova-2 (Fragment) n=1 Tax=Neovison vison TaxID=452646 RepID=U6DTT7_NEOVI)

HSP 1 Score: 67.0 bits (162), Expect = 1.840e-13
Identity = 27/46 (58.70%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 144
            ++A+P++LVG ILGKGG T+++ Q  TGARIQ+S++GE++PGT NR
Sbjct:   28 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNR 73
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BLAST of mRNA_E-fasciculatus_F_contig15987.4099.1 vs. uniprot
Match: A0A8C3UUG3_CATUS (KH domain-containing protein n=2 Tax=Archelosauria TaxID=1329799 RepID=A0A8C3UUG3_CATUS)

HSP 1 Score: 67.4 bits (163), Expect = 3.170e-13
Identity = 27/46 (58.70%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 144
            ++A+P++LVG ILGKGG T+++ Q  TGARIQ+S++GE++PGT NR
Sbjct:   42 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNR 87
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BLAST of mRNA_E-fasciculatus_F_contig15987.4099.1 vs. uniprot
Match: UPI000695E587 (RNA-binding protein Nova-2 n=1 Tax=Chinchilla lanigera TaxID=34839 RepID=UPI000695E587)

HSP 1 Score: 67.0 bits (162), Expect = 3.980e-13
Identity = 27/46 (58.70%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 144
            ++A+P++LVG ILGKGG T+++ Q  TGARIQ+S++GE++PGT NR
Sbjct:   29 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNR 74
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BLAST of mRNA_E-fasciculatus_F_contig15987.4099.1 vs. uniprot
Match: A0A8C5RD50_LATLA (KH domain-containing protein n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5RD50_LATLA)

HSP 1 Score: 67.4 bits (163), Expect = 4.820e-13
Identity = 27/46 (58.70%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 144
            ++A+P++LVG ILGKGG T+++ Q  TGARIQ+S++GE++PGT NR
Sbjct:   62 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNR 107
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BLAST of mRNA_E-fasciculatus_F_contig15987.4099.1 vs. uniprot
Match: A0A670XVA5_PSETE (KH domain-containing protein n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670XVA5_PSETE)

HSP 1 Score: 67.4 bits (163), Expect = 7.580e-13
Identity = 27/46 (58.70%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 144
            ++A+P++LVG ILGKGG T+++ Q  TGARIQ+S++GE++PGT NR
Sbjct:   63 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNR 108
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BLAST of mRNA_E-fasciculatus_F_contig15987.4099.1 vs. uniprot
Match: A0A3Q3J843_MONAL (Uncharacterized protein n=1 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3J843_MONAL)

HSP 1 Score: 67.8 bits (164), Expect = 1.480e-12
Identity = 28/46 (60.87%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 144
            ++A+P++LVG ILGKGG T+++ Q  TGARIQ+S++GE+IPGT NR
Sbjct:   99 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNR 144
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BLAST of mRNA_E-fasciculatus_F_contig15987.4099.1 vs. uniprot
Match: A0A8C6YYB6_NOTPE (KH domain-containing protein n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6YYB6_NOTPE)

HSP 1 Score: 67.4 bits (163), Expect = 1.720e-12
Identity = 27/46 (58.70%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 144
            ++A+P++LVG ILGKGG T+++ Q  TGARIQ+S++GE++PGT NR
Sbjct:   89 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNR 134
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15987.4099.1 vs. uniprot
Match: A0A7S0GCT5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCT5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.850e-12
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    7 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 144
            QVA+PD L+G ILG+GGA + D+Q  +GARI++SQRGE IPGT NR
Sbjct:   33 QVAVPDQLIGGILGRGGAGINDLQMCSGARIKISQRGEVIPGTNNR 78
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15987.4099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM85_ECTSI4.610e-24100.00KH_dom_type_1 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KV61_9PHAE2.200e-2097.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
U6DTT7_NEOVI1.840e-1358.70RNA-binding protein Nova-2 (Fragment) n=1 Tax=Neov... [more]
A0A8C3UUG3_CATUS3.170e-1358.70KH domain-containing protein n=2 Tax=Archelosauria... [more]
UPI000695E5873.980e-1358.70RNA-binding protein Nova-2 n=1 Tax=Chinchilla lani... [more]
A0A8C5RD50_LATLA4.820e-1358.70KH domain-containing protein n=1 Tax=Laticauda lat... [more]
A0A670XVA5_PSETE7.580e-1358.70KH domain-containing protein n=1 Tax=Pseudonaja te... [more]
A0A3Q3J843_MONAL1.480e-1260.87Uncharacterized protein n=1 Tax=Monopterus albus T... [more]
A0A8C6YYB6_NOTPE1.720e-1258.70KH domain-containing protein n=1 Tax=Nothoprocta p... [more]
A0A7S0GCT5_9STRA1.850e-1265.22Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15987contigE-fasciculatus_F_contig15987:31..177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog2880.D7FM85
KEGG koko:K14944
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010467,GO:0016070,GO:0034641,GO:0042221,GO:0042592,GO:0043170,GO:0043900,GO:0043903,GO:0044237,GO:0044238,GO:0046483,GO:0046719,GO:0048878,GO:0050789,GO:0050792,GO:0050896,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2191@1,KOG2191@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionK Homology domain, type 1
Ec32 orthologEc-16_004710.1
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928066.048651-CDS-E-fasciculatus_F_contig15987:30..1771622928066.048651-CDS-E-fasciculatus_F_contig15987:30..177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15987 31..177 -
1695995808.995996-CDS-E-fasciculatus_F_contig15987:30..1771695995808.995996-CDS-E-fasciculatus_F_contig15987:30..177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15987 31..177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15987.4099.1prot_E-fasciculatus_F_contig15987.4099.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15987 31..177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15987.4099.1

>prot_E-fasciculatus_F_contig15987.4099.1 ID=prot_E-fasciculatus_F_contig15987.4099.1|Name=mRNA_E-fasciculatus_F_contig15987.4099.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=49bp
VGQVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR*
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mRNA from alignment at E-fasciculatus_F_contig15987:31..177-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15987.4099.1 ID=mRNA_E-fasciculatus_F_contig15987.4099.1|Name=mRNA_E-fasciculatus_F_contig15987.4099.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15987:31..177- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTGGGCAGGTGGCCATCCCGGATCACCTGGTGGGGGTCATCCTCGGAAA
GGGAGGCGCCACGGTCATCGACATGCAGAACCAGACCGGTGCCCGCATCC
AGGTTAGCCAGCGGGGCGAGTACATCCCGGGCACGACGAACAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15987:31..177-

>mRNA_E-fasciculatus_F_contig15987.4099.1 ID=mRNA_E-fasciculatus_F_contig15987.4099.1|Name=mRNA_E-fasciculatus_F_contig15987.4099.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=294bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15987:31..177- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTGGGCAGGTGGCCATCCCGGATCACCTGGTGGGGGTCATCCTCGGAAA
GGGAGGCGCCACGGTCATCGACATGCAGAACCAGACCGGTGCCCGCATCC
AGGTTAGCCAGCGGGGCGAGTACATCCCGGGCACGACGAACAGGTGAGTT
GGGCAGGTGGCCATCCCGGATCACCTGGTGGGGGTCATCCTCGGAAAGGG
AGGCGCCACGGTCATCGACATGCAGAACCAGACCGGTGCCCGCATCCAGG
TTAGCCAGCGGGGCGAGTACATCCCGGGCACGACGAACAGGTGA
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