mRNA_E-fasciculatus_F_contig15984.4098.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15984.4098.1
Unique NamemRNA_E-fasciculatus_F_contig15984.4098.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15984.4098.1 vs. uniprot
Match: D8LIL5_ECTSI (Cyclin D1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL5_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 1.630e-64
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 1
Query:    1 QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHR 300
            QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAA AIL ARRALCIKPMWRDELT+LTGYKLE+ISDCGEDLW FYEKMFPLHR
Sbjct:  184 QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAAAAILTARRALCIKPMWRDELTDLTGYKLEEISDCGEDLWHFYEKMFPLHR 283          
BLAST of mRNA_E-fasciculatus_F_contig15984.4098.1 vs. uniprot
Match: A0A835ZBR6_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR6_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.780e-39
Identity = 68/112 (60.71%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHRVSEMRPPGMSPE 336
            QGVT   D CQGR LV KV  YM KYV+FFANLCQQ Y FQR++PS IAA +ILAARRALCI P+WR EL  LTG    DI  C E++W+FYE MFP H+   +R  G  P+
Sbjct:  125 QGVTFLSDECQGRALVTKVTRYMKKYVEFFANLCQQDYSFQRHRPSTIAAASILAARRALCIAPLWRPELERLTGCAPRDIQACAEEVWAFYEAMFPTHQP--LRTSGSEPK 234          
BLAST of mRNA_E-fasciculatus_F_contig15984.4098.1 vs. uniprot
Match: A0A7S2FS20_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS20_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.970e-24
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 297
            +GV   DD+  GR L++K+  Y+ KY +FFANLC Q Y +Q++ PS +AA  + +AR AL + P+WR EL ELTG+  ED       +W  Y   FP H
Sbjct:   47 RGVVFKDDSWNGRALIDKIPRYVQKYTEFFANLCMQDYLYQQFSPSLLAAAIVYSARHALSVAPLWRPELEELTGHCTEDAHQVFLKIWGLYSDTFPAH 145          
BLAST of mRNA_E-fasciculatus_F_contig15984.4098.1 vs. uniprot
Match: A0A1Z5JHV1_FISSO (Cyclin N-terminal domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHV1_FISSO)

HSP 1 Score: 102 bits (254), Expect = 7.500e-24
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHRVSEMRP 318
            +G    DD  QGR L+ K+  Y+ KY +FF NL  Q Y FQ+Y+PS +AA A++A+R AL I+P WR EL   TGY   DI      LWS+YE+ FP H    + P
Sbjct:  209 KGACFVDDAWQGRHLIPKIPRYLKKYAEFFCNLALQDYSFQQYRPSILAAAAVMASRVALQIEPKWRPELVRRTGYDEFDILPIFNHLWSYYEEQFPGHVSRSISP 314          
BLAST of mRNA_E-fasciculatus_F_contig15984.4098.1 vs. uniprot
Match: A0A2D4BMH4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMH4_PYTIN)

HSP 1 Score: 102 bits (254), Expect = 1.140e-23
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHRVSE--MRPPGMS 330
            Q V   +D  QG  +VE+ + Y  KY DFF +LC Q YQFQ Y+PS +AA+ + A+R+AL + P+WR+ELTELTGY  E +  C   +W+ Y K F     SE  + P G++
Sbjct:  231 QPVLFTNDEIQGTDMVEEALEYYRKYADFFVDLCLQSYQFQAYRPSLVAASILAASRKALGMTPLWREELTELTGYSPEQVEPCFIAVWTHYVKTFGDKSASEKEISPTGVA 342          
BLAST of mRNA_E-fasciculatus_F_contig15984.4098.1 vs. uniprot
Match: A0A5D6XV07_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV07_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.730e-21
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    1 QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHRVSEMR--PPGMS 330
            Q V   DD  QG  +VE+ + Y +KY +FF +LC Q YQFQ Y+PS +AA  +  +R+AL + P+WR+ELT LTGY  E +  C   LW+ Y   F     S M   P G++
Sbjct:  180 QSVLFCDDEIQGASMVEEALEYYHKYNEFFVDLCLQEYQFQAYRPSLVAAAILAVSRKALGMAPLWREELTVLTGYGEEQVEPCFCALWAHYVASFGDKHASGMESSPTGVA 291          
BLAST of mRNA_E-fasciculatus_F_contig15984.4098.1 vs. uniprot
Match: A0A2E3DBF1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E3DBF1_9GAMM)

HSP 1 Score: 91.7 bits (226), Expect = 7.450e-20
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFP 291
            QGV  P D   G     +VV Y+ +Y DFFA+LC Q Y FQR++ S   A  + ++RRA+ I+P+W D L ++T Y  E +S+C + +W  Y K FP
Sbjct:  190 QGVIYPTDKMAGNPCNNRVVKYLRRYTDFFADLCLQDYSFQRFRESVKGAAFLYSSRRAMSIEPIWPDRLVQITTYTEEALSECAKAVWDCYRKNFP 286          
BLAST of mRNA_E-fasciculatus_F_contig15984.4098.1 vs. uniprot
Match: A0A3F2RXS3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXS3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.050e-18
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHRVSEMR---PPGMS 330
            Q V   DD   G  LV++   Y  KY +FF +L  Q Y  Q Y+PS +AA+ ++A+R+AL + P+WRDEL+ LTGY  E ++ C + +W  +E  F     + +R   P G++
Sbjct:  198 QTVLFADDRVMGSELVDEAHDYYCKYAEFFVDLVLQEYSLQVYRPSVVAASILVASRKALGVTPLWRDELSVLTGYDEEQVAPCFQAVWEHFETTFGPRNKTNVRDDSPAGVA 310          
BLAST of mRNA_E-fasciculatus_F_contig15984.4098.1 vs. uniprot
Match: A0A662XH55_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XH55_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.510e-18
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    1 QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMF-PLHRV 303
            Q V   DD   G  LV++   Y  KY +FF +L  Q Y  Q Y+PS +AA+ ++AAR+AL + P+WRDEL+ LTGY    ++ C + +WS +E  F PL++ 
Sbjct:  210 QTVLFADDRLLGSELVDEAHGYYCKYAEFFVDLVLQEYSLQVYRPSVVAASILVAARKALDVTPLWRDELSALTGYDEAQVAPCFQAVWSHFEATFGPLNKA 311          
BLAST of mRNA_E-fasciculatus_F_contig15984.4098.1 vs. uniprot
Match: A0A6H5KXG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.540e-18
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1
Query:  193 MWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHRVS 306
            MWRDELT+LTGYKLE+ISDCGEDLW FYEKMFPLHRV+
Sbjct:    1 MWRDELTDLTGYKLEEISDCGEDLWHFYEKMFPLHRVA 38          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15984.4098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LIL5_ECTSI1.630e-6495.00Cyclin D1 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A835ZBR6_9STRA1.780e-3960.71Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2FS20_9STRA1.970e-2444.44Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1Z5JHV1_FISSO7.500e-2446.23Cyclin N-terminal domain-containing protein n=2 Ta... [more]
A0A2D4BMH4_PYTIN1.140e-2344.64Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5D6XV07_9STRA5.730e-2142.86Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2E3DBF1_9GAMM7.450e-2042.27Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A3F2RXS3_9STRA3.050e-1838.05Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A662XH55_9STRA3.510e-1842.16Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6H5KXG3_9PHAE4.540e-1889.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15984contigE-fasciculatus_F_contig15984:1466..2582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog35128.Thaps21159
Preferred nameCCNJL
KEGG koko:K06627,ko:K13983,ko:K21771
KEGG Pathwayko04068,ko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map04068,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG ModuleM00693
GOsGO:0000003,GO:0000278,GO:0001932,GO:0003006,GO:0003674,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0008150,GO:0009653,GO:0009790,GO:0009987,GO:0010468,GO:0016538,GO:0019207,GO:0019220,GO:0019222,GO:0019887,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030234,GO:0031323,GO:0031399,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0042325,GO:0043549,GO:0044703,GO:0045448,GO:0045859,GO:0048468,GO:0048477,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051338,GO:0051704,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0065009,GO:0080090,GO:0098772
EggNOG free text desc.Cyclin_C
EggNOG OGs2XASD@2836,COG5024@1,KOG0654@2759
EC3.6.4.13
COG Functional cat.D
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size351
Cds size351
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15984.4098.1prot_E-fasciculatus_F_contig15984.4098.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15984 1466..2582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.9773517-CDS-E-fasciculatus_F_contig15984:1465..16281622928065.9773517-CDS-E-fasciculatus_F_contig15984:1465..1628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15984 1466..1628 -
1695995808.9650314-CDS-E-fasciculatus_F_contig15984:1465..16281695995808.9650314-CDS-E-fasciculatus_F_contig15984:1465..1628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15984 1466..1628 -
1622928065.992542-CDS-E-fasciculatus_F_contig15984:2171..23051622928065.992542-CDS-E-fasciculatus_F_contig15984:2171..2305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15984 2172..2305 -
1695995808.9758706-CDS-E-fasciculatus_F_contig15984:2171..23051695995808.9758706-CDS-E-fasciculatus_F_contig15984:2171..2305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15984 2172..2305 -
1622928066.0108874-CDS-E-fasciculatus_F_contig15984:2528..25821622928066.0108874-CDS-E-fasciculatus_F_contig15984:2528..2582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15984 2529..2582 -
1695995808.9845064-CDS-E-fasciculatus_F_contig15984:2528..25821695995808.9845064-CDS-E-fasciculatus_F_contig15984:2528..2582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15984 2529..2582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15984.4098.1

>prot_E-fasciculatus_F_contig15984.4098.1 ID=prot_E-fasciculatus_F_contig15984.4098.1|Name=mRNA_E-fasciculatus_F_contig15984.4098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=117bp
QGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAA
TAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHR
VSEMRPPGMSPELHRMF
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mRNA from alignment at E-fasciculatus_F_contig15984:1466..2582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15984.4098.1 ID=mRNA_E-fasciculatus_F_contig15984.4098.1|Name=mRNA_E-fasciculatus_F_contig15984.4098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1117bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15984:1466..2582- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGAGTAACCGCGCCGGACGACACGTGCCAAGGGAGGCGGCTCGTCGA GAAGGTACGGCGATGGTTGGGCGACGCCATGACATCTGAAAAACCTCAGC GCCGAAGTTTCCTTGCCGAAAGCGTCGCCGCATAGGAACGTAGCTCTGCA GCCAGCCACTTTGGTTGCTTCAAATCACGATGCAAGTCTACGGTAGGTTA ATACCCGCGCGTGCCTCATCCCATTCTCACCCCGGCCCCCTTCTCCACGC CGTGTCCCCTGTTGCACAATTGCGCAGGTCGTGACGTACATGAACAAGTA CGTGGACTTCTTCGCGAACCTATGCCAGCAGGGCTACCAGTTCCAGCGGT ATAAGCCGTCGCACATCGCCGCGACCGCTATCCTTGCCGCGCGGAGAGCA CTCTGCATAAAGTGAGTTTTGTTGTTGTTGTTGTTGTTGTTGAAACCATG TTTGATGTACCCATCCAAGGTAAGATTGCGCTTTGCATAAAATGAGTTTT TTTTTATTGTTCAAACCTTGTGTGATTTACTACAAGTGAAGATCGCTTTT TGTTAAATAGTACTCGATTTTTCATCCGAAGTAAGATTGCGCTTTGCGTA AGTGAGCTTTTTTTTGTTGTTCAAACCTTGTGTGATTACCCATCTAAAGT GAATATCGCTTTTTGTTAAATAGTTTTCGATTTTTTTTTTCTTGCCGCAC GCTGTATACCGCCGCCCGGTCGTTTTGCGTACACAGAGGAGGAGTTCATC ATAGGTATTACGGTACTTTCTGTGATGCCCACCAAGTACTGTTCAAATTC AGCTACCACTCTGTTCGGGAATAGAGGGACCACTGGGACAATCACACAAG TATCCGAGTGGTTCCTACATTTCCGATCGAATGTGGTACGTGATTGCTTC TACGGTTGCCATAGAACATTCCACTCATAACTTTAGTTAAAACAATGATA CCAGACCGATGTGGCGAGATGAGCTGACCGAGCTGACGGGCTACAAGCTG GAGGACATATCTGATTGCGGCGAGGACCTGTGGAGCTTCTACGAGAAGAT GTTCCCGTTGCACAGGGTGAGCGAGATGAGACCGCCAGGAATGTCGCCAG AGTTGCACCGTATGTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15984:1466..2582-

>mRNA_E-fasciculatus_F_contig15984.4098.1 ID=mRNA_E-fasciculatus_F_contig15984.4098.1|Name=mRNA_E-fasciculatus_F_contig15984.4098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15984:1466..2582- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGAGTAACCGCGCCGGACGACACGTGCCAAGGGAGGCGGCTCGTCGA
GAAGCAGGGAGTAACCGCGCCGGACGACACGTGCCAAGGGAGGCGGCTCG
TCGAGAAGGTCGTGACGTACATGAACAAGTACGTGGACTTCTTCGCGAAC
CTATGCCAGCAGGGCTACCAGTTCCAGCGGTATAAGCCGTCGCACATCGC
CGCGACCGCTATCCTTGCCGCGCGGAGAGCACTCTGCATAAAGTCGTGAC
GTACATGAACAAGTACGTGGACTTCTTCGCGAACCTATGCCAGCAGGGCT
ACCAGTTCCAGCGGTATAAGCCGTCGCACATCGCCGCGACCGCTATCCTT
GCCGCGCGGAGAGCACTCTGCATAAAACCGATGTGGCGAGATGAGCTGAC
CGAGCTGACGGGCTACAAGCTGGAGGACATATCTGATTGCGGCGAGGACC
TGTGGAGCTTCTACGAGAAGATGTTCCCGTTGCACAGGGTGAGCGAGATG
AGACCGCCAGGAATGTCGCCAGAGTTGCACCGTATGTTCACCGATGTGGC
GAGATGAGCTGACCGAGCTGACGGGCTACAAGCTGGAGGACATATCTGAT
TGCGGCGAGGACCTGTGGAGCTTCTACGAGAAGATGTTCCCGTTGCACAG
GGTGAGCGAGATGAGACCGCCAGGAATGTCGCCAGAGTTGCACCGTATGT
TC
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