mRNA_E-fasciculatus_F_contig15984.4097.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15984.4097.1
Unique NamemRNA_E-fasciculatus_F_contig15984.4097.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15984.4097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15984contigE-fasciculatus_F_contig15984:194..1181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size919
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15984.4097.1prot_E-fasciculatus_F_contig15984.4097.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15984 215..928 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.8748906-UTR-E-fasciculatus_F_contig15984:193..2141622928065.8748906-UTR-E-fasciculatus_F_contig15984:193..214Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15984 194..214 +
1695995808.9222796-UTR-E-fasciculatus_F_contig15984:193..2141695995808.9222796-UTR-E-fasciculatus_F_contig15984:193..214Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15984 194..214 +
1622928065.9182537-UTR-E-fasciculatus_F_contig15984:928..11811622928065.9182537-UTR-E-fasciculatus_F_contig15984:928..1181Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15984 929..1181 +
1695995808.9553654-UTR-E-fasciculatus_F_contig15984:928..11811695995808.9553654-UTR-E-fasciculatus_F_contig15984:928..1181Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15984 929..1181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.8900256-CDS-E-fasciculatus_F_contig15984:214..8351622928065.8900256-CDS-E-fasciculatus_F_contig15984:214..835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15984 215..835 +
1695995808.9321034-CDS-E-fasciculatus_F_contig15984:214..8351695995808.9321034-CDS-E-fasciculatus_F_contig15984:214..835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15984 215..835 +
1622928065.9020605-CDS-E-fasciculatus_F_contig15984:904..9281622928065.9020605-CDS-E-fasciculatus_F_contig15984:904..928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15984 905..928 +
1695995808.9422479-CDS-E-fasciculatus_F_contig15984:904..9281695995808.9422479-CDS-E-fasciculatus_F_contig15984:904..928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15984 905..928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15984.4097.1

>prot_E-fasciculatus_F_contig15984.4097.1 ID=prot_E-fasciculatus_F_contig15984.4097.1|Name=mRNA_E-fasciculatus_F_contig15984.4097.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=215bp
MLAAPNAAGVVNSFSKRAAAAAAAAAGQRPSRIRPKYARRNSADYAHLRR
PHGAHLPVLFLYKSCVRTRVLLHKSNNVGERAEGTKNKPTDKPKPKRDTI
VQPCRSSRPAPLAALPGVCGGTADAKPVPFNPELGRARGRYAPQRPGKLT
TIYIAHTRRRKRGATCSAVSGRGSPKKWAITCCLMTRRHLVSLPPMAAAA
AAAAAAARFDHWYR*
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mRNA from alignment at E-fasciculatus_F_contig15984:194..1181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15984.4097.1 ID=mRNA_E-fasciculatus_F_contig15984.4097.1|Name=mRNA_E-fasciculatus_F_contig15984.4097.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=988bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15984:194..1181+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCATGGACAGCAGGGGCAACAATGCTTGCGGCGCCAAACGCAGCAGGTGT
TGTGAACAGCTTCAGCAAAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
GTCAACGTCCCTCGCGTATCAGACCAAAATACGCCAGAAGAAATAGCGCA
GACTATGCGCATCTCCGGAGACCGCACGGCGCCCATCTCCCCGTGCTCTT
TCTCTACAAAAGTTGCGTGCGAACCCGCGTGCTACTACATAAAAGTAATA
ATGTCGGGGAGCGGGCGGAAGGAACCAAAAATAAACCAACTGACAAACCA
AAACCCAAAAGAGACACTATTGTACAGCCCTGCCGTAGTAGCCGTCCCGC
GCCATTGGCTGCGCTTCCTGGTGTTTGTGGTGGCACCGCGGACGCGAAGC
CGGTGCCCTTCAACCCCGAGCTCGGCCGTGCGCGAGGTAGGTACGCACCC
CAGAGGCCGGGAAAGCTAACCACGATATACATCGCTCACACTCGTCGTCG
CAAACGCGGGGCAACTTGCTCAGCAGTAAGCGGTCGTGGCTCTCCAAAAA
AATGGGCCATAACATGTTGCCTGATGACACGCCGCCACCTCGTGTCCCTG
CCCCCCATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCCC
ACGAGCCGCCGCCAGGATATTCACAACGCCCGCGGCACCCTTTTTCAAAC
AGACGCCGAAGCGATTCGACCACTGGTACCGTTGAGGCAGCAGTAGCCCC
GCTCCCCCCGCGCGCCCTGTCCGAAGGGATTCTACTCCAGGTACGGTAGA
GGCAGTGGTAGCCCCCTCCCCCCCTTCCGCCGCCGCCCCGAAGCGGTTCT
ACTACTGTACGGTAGCGGCAGCTGTAGCCCCACCGGCTGCTGCCCTTCCC
GCTACGGTGTTCGGGTTAGCCCCGATGGCCGGGTTGCTGCCGCTCGAAGG
GGCAGCCCCGGCCCCCGCCCCACCCGCCCCTGCGGCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15984:194..1181+

>mRNA_E-fasciculatus_F_contig15984.4097.1 ID=mRNA_E-fasciculatus_F_contig15984.4097.1|Name=mRNA_E-fasciculatus_F_contig15984.4097.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15984:194..1181+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTGCGGCGCCAAACGCAGCAGGTGTTGTGAACAGCTTCAGCAAAAG
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTCAACGTCCCTCGCGTATCA
GACCAAAATACGCCAGAAGAAATAGCGCAGACTATGCGCATCTCCGGAGA
CCGCACGGCGCCCATCTCCCCGTGCTCTTTCTCTACAAAAGTTGCGTGCG
AACCCGCGTGCTACTACATAAAAGTAATAATGTCGGGGAGCGGGCGGAAG
GAACCAAAAATAAACCAACTGACAAACCAAAACCCAAAAGAGACACTATT
GTACAGCCCTGCCGTAGTAGCCGTCCCGCGCCATTGGCTGCGCTTCCTGG
TGTTTGTGGTGGCACCGCGGACGCGAAGCCGGTGCCCTTCAACCCCGAGC
TCGGCCGTGCGCGAGGTAGGTACGCACCCCAGAGGCCGGGAAAGCTAACC
ACGATATACATCGCTCACACTCGTCGTCGCAAACGCGGGGCAACTTGCTC
AGCAGTAAGCGGTCGTGGCTCTCCAAAAAAATGGGCCATAACATGTTGCC
TGATGACACGCCGCCACCTCGTGTCCCTGCCCCCCATGGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAATGCTTGCGGCGCCAAACGCAGCAGGTGT
TGTGAACAGCTTCAGCAAAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
GTCAACGTCCCTCGCGTATCAGACCAAAATACGCCAGAAGAAATAGCGCA
GACTATGCGCATCTCCGGAGACCGCACGGCGCCCATCTCCCCGTGCTCTT
TCTCTACAAAAGTTGCGTGCGAACCCGCGTGCTACTACATAAAAGTAATA
ATGTCGGGGAGCGGGCGGAAGGAACCAAAAATAAACCAACTGACAAACCA
AAACCCAAAAGAGACACTATTGTACAGCCCTGCCGTAGTAGCCGTCCCGC
GCCATTGGCTGCGCTTCCTGGTGTTTGTGGTGGCACCGCGGACGCGAAGC
CGGTGCCCTTCAACCCCGAGCTCGGCCGTGCGCGAGGTAGGTACGCACCC
CAGAGGCCGGGAAAGCTAACCACGATATACATCGCTCACACTCGTCGTCG
CAAACGCGGGGCAACTTGCTCAGCAGTAAGCGGTCGTGGCTCTCCAAAAA
AATGGGCCATAACATGTTGCCTGATGACACGCCGCCACCTCGTGTCCCTG
CCCCCCATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGATTCGA
CCACTGGTACCGTTGACGATTCGACCACTGGTACCGTTGA
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