mRNA_E-fasciculatus_F_contig15981.4095.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15981.4095.1
Unique NamemRNA_E-fasciculatus_F_contig15981.4095.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15981.4095.1 vs. uniprot
Match: D7G554_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G554_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 2.640e-101
Identity = 327/386 (84.72%), Postives = 330/386 (85.49%), Query Frame = 1 
Query:    1 SAVVRVRAAAALGAMLQLVHERQSTPKHSRLVLDKIEEGFEQGTAERVHGSLLVIRQLLRHPGPWMAHRNQRXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTATPFGXXXXXXXXXXXXPFASNXXXXXRLXXXXXXXXXXXXXXXXXXXXXXXXXDL--SKMFAGAATPVGAPXXXXXXXXXXXXXXXXSTAQSQKGRGAFFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AEAGQEEEYRVLCERVLARRDHKEVAVRRTVMAVLPELVAFFPGGAGEFVEPAVWFLINTLRQGQRRDRGLAYLSLARLGLAAGTGVWRGAPTLWHSVREVVKEGLAEDRRDFCPQSLACLEV 1146
            SAVVRVRAAAALGAMLQLVHERQSTPKHSRLVLDKIEEGFEQGTAERVHGSLLVIRQLLRHPGPWMAHR+QRXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXX     XXXXX  XXXXXXXXXXXXXXXXXXXXXXXXX    SKMFAGAATPVGA XXXXXXXXXXXXXXXX              XXXXXXXXXXXXXXXXXXXXXXXXXXX                  XXXXXXXXXXXX  AEAGQE EYRVLCERVLARRDHKEVAVRRTVMA+LPELVAFFPGGAGEFVEPAVWFLI+TLRQGQR DRGLAYLSLARLGLAAGTGVWRGAPTLWHSVREVVKEGLAEDRRDFCPQSLACLEV
Sbjct:  178 SAVVRVRAAAALGAMLQLVHERQSTPKHSRLVLDKIEEGFEQGTAERVHGSLLVIRQLLRHPGPWMAHRHQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKMFAGAATPVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYQAPGTPVLGMLGGGAAXXXXXXXXXXXXXMAEAGQEAEYRVLCERVLARRDHKEVAVRRTVMALLPELVAFFPGGAGEFVEPAVWFLIHTLRQGQRSDRGLAYLSLARLGLAAGTGVWRGAPTLWHSVREVVKEGLAEDRRDFCPQSLACLEV 563
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BLAST of mRNA_E-fasciculatus_F_contig15981.4095.1 vs. uniprot
Match: A0A6H5K7N2_9PHAE (LysM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N2_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 8.640e-89
Identity = 306/377 (81.17%), Postives = 315/377 (83.55%), Query Frame = 1 
Query:   67 QSTPKHSRLVLDKIEEGFEQGTAERVHGSLLVIRQLLRHPGPWMAHRNQRXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTATPFGXXXXXXXXXXXXPFASNXXXXXRLXXXXXXXXXXXXXXXXXXXXXXXXXD-----LSKMFAGAATPVGAPXXXXXXXXXXXXXXXXST--------AQSQKGRGAFFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAGQEEEYRVLCERVLARRDHKEVAVRRTVMAVLPELVAFFPGGAGEFVEPAVWFLINTLRQGQRRDRGLAYLSLARLGLAAGTGVWRGAPTLWHSVREVVKEGLAEDRRDFCPQSLACLEVHAVV 1158
            +STPKHSRLVLDKIEEGFEQGTAERVHGSLLVIRQLLRHPGPWMAHR+QRXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXX     XXXXX  XXXXXXXXXXXXXXXXXXXXXXXXX      LSKMFAGAATPVGAP XXXXXXXXXXXXXXX          AQSQKGRGAFFP         XXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXX         AEA QE EYR+LCERVLARRDHKEVAVRRTVMA+LPELVAFFPGGAGEFVEPAVWFLI+TLRQGQR DRGLAYLSLARLGLAAGTGVWRGAP+LWHSVREVVKEGLAEDRRDFCPQSLACLE+  ++
Sbjct:  151 ESTPKHSRLVLDKIEEGFEQGTAERVHGSLLVIRQLLRHPGPWMAHRHQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSKMFAGAATPVGAPSXXXXXXXXXXXXXXXXXXXXXXXXXAQSQKGRGAFFPEGAGSVAVTXXXXXXXXXXXXXXXXXXQVLGMLGXXXXXXXXXXXXXXM--------AEAEQEAEYRLLCERVLARRDHKEVAVRRTVMALLPELVAFFPGGAGEFVEPAVWFLIHTLRQGQRSDRGLAYLSLARLGLAAGTGVWRGAPSLWHSVREVVKEGLAEDRRDFCPQSLACLEMIVII 519
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15981.4095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G554_ECTSI2.640e-10184.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7N2_9PHAE8.640e-8981.17LysM domain-containing protein (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15981contigE-fasciculatus_F_contig15981:198..2322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.2
Seed ortholog evalue5.3e-87
Seed eggNOG ortholog2880.D7G554
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0891@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size1158
Cds size1158
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15981.4095.1prot_E-fasciculatus_F_contig15981.4095.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15981 198..2322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.6850028-CDS-E-fasciculatus_F_contig15981:197..3891622928065.6850028-CDS-E-fasciculatus_F_contig15981:197..389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15981 198..389 -
1695995808.866707-CDS-E-fasciculatus_F_contig15981:197..3891695995808.866707-CDS-E-fasciculatus_F_contig15981:197..389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15981 198..389 -
1622928065.7025557-CDS-E-fasciculatus_F_contig15981:697..15481622928065.7025557-CDS-E-fasciculatus_F_contig15981:697..1548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15981 698..1548 -
1695995808.8769586-CDS-E-fasciculatus_F_contig15981:697..15481695995808.8769586-CDS-E-fasciculatus_F_contig15981:697..1548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15981 698..1548 -
1622928065.7399216-CDS-E-fasciculatus_F_contig15981:2207..23221622928065.7399216-CDS-E-fasciculatus_F_contig15981:2207..2322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15981 2208..2322 -
1695995808.885141-CDS-E-fasciculatus_F_contig15981:2207..23221695995808.885141-CDS-E-fasciculatus_F_contig15981:2207..2322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15981 2208..2322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15981.4095.1

>prot_E-fasciculatus_F_contig15981.4095.1 ID=prot_E-fasciculatus_F_contig15981.4095.1|Name=mRNA_E-fasciculatus_F_contig15981.4095.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=386bp
SAVVRVRAAAALGAMLQLVHERQSTPKHSRLVLDKIEEGFEQGTAERVHG
SLLVIRQLLRHPGPWMAHRNQRRRRRRRGSTEDNNHGPYYGGGGSGGATS
GTATPFGGGAATPFGGAATPFASNNSSGARLAPQMLPPPARGTASGGGGG
GGGSGGDLSKMFAGAATPVGAPSTAGSGGGGGNAAGGPSTAQSQKGRGAF
FPEGGGGSVAATAAARGVVPPPPSPHHHNYQAPATPVLGMLGGGAAAAAA
VAAAAAAAMAEAGQEEEYRVLCERVLARRDHKEVAVRRTVMAVLPELVAF
FPGGAGEFVEPAVWFLINTLRQGQRRDRGLAYLSLARLGLAAGTGVWRGA
PTLWHSVREVVKEGLAEDRRDFCPQSLACLEVHAVV
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mRNA from alignment at E-fasciculatus_F_contig15981:198..2322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15981.4095.1 ID=mRNA_E-fasciculatus_F_contig15981.4095.1|Name=mRNA_E-fasciculatus_F_contig15981.4095.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2125bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15981:198..2322- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGGCGGTGGTGCGTGTCCGGGCGGCCGCCGCCCTCGGGGCTATGCTGCA
GCTGGTGCACGAGAGGCAGAGCACGCCCAAGCACTCCCGACTCGTGCTAG
ACAAGATCGAAGAAGGTACAGCTGTAGTCCGTCATGTAGCTCTACGCGTG
TAGTGTACGTAGCGTTATGGTCGTTTCCCCTTAGAAGACAGCTGAGATCG
AGGAAATGATGTATGTAGCTCTACGTGTGTGGCACACGTAGCCTTGTGGT
CGTTTAATCTTGGGAGACACATGCTGCTGCTGCTGATGCTAGTGCTTGCG
TGCATACGCAGTATGTGAACCAACCGAGAGCGAGCGATGTTATATTGGCA
GTTCGTGCCCACCGATACCGACAACGACGACGACTTCTCGTGTTTGGTAC
CGTTCGTCTATGGTCGGATAGGCTCTCGTCTAGGGTCTTATGCTGAGAAA
TTTATTCCGTCTCTAATAAATAGGGTTGGATAGGGAGTCTCCTCCTGATC
GTCTCCAAGGAGAACAAGCAAGTCCTCGTCGACGAGGGACTCTTCGGCGT
CAGGAAGCCGGCCCACTGTGCAGAGGTCCTTAAATCAGCCGCTTGTGTCT
TGTTCATTATTTTATTCTAATTTTTGTCACAAAACACAACTGATTTATCT
CTTCCACCGAAAATCGTCCGGGATAGATAAACAATGAATTTAATTCATAG
TGTTGTAAGATGATGACCACCGGAACTCTCGATTCTCCTACGCAAAACAC
GCCACGCTCCGCGAACGAAAAAAGGCTTCGAGCAAGGAACGGCCGAGCGA
GTCCACGGGAGCCTCCTTGTCATCCGGCAGCTCCTGCGACACCCGGGGCC
CTGGATGGCGCACCGCAACCAGCGCCGCCGTCGACGCCGCCGGGGGAGCA
CGGAAGACAACAACCACGGACCCTACTACGGCGGTGGCGGCAGCGGCGGT
GCGACTTCGGGAACGGCTACTCCGTTCGGAGGGGGCGCGGCGACGCCATT
CGGAGGAGCGGCCACCCCTTTTGCGAGCAACAACAGCAGCGGCGCGCGGC
TGGCGCCTCAGATGCTCCCGCCGCCCGCGCGGGGCACTGCCTCCGGCGGC
GGCGGCGGCGGCGGCGGCAGCGGCGGTGACCTGTCGAAAATGTTCGCCGG
TGCCGCCACCCCCGTGGGTGCGCCAAGCACCGCCGGCAGCGGCGGCGGCG
GCGGTAACGCTGCTGGTGGGCCGTCCACGGCACAGTCGCAGAAAGGCCGC
GGTGCTTTCTTCCCCGAAGGCGGCGGCGGCAGCGTAGCGGCGACAGCGGC
AGCGAGAGGCGTGGTACCCCCGCCCCCGTCCCCCCACCACCACAACTACC
AGGCACCGGCAACACCGGTGCTGGGGATGCTGGGCGGGGGCGCGGCGGCG
GCGGCGGCGGTGGCGGCGGCGGCAGCGGCGGCAATGGCGGAGGCCGGACA
GGAGGAGGAGTATCGGGTCCTCTGCGAGAGGGTGCTGGCCCGCAGGGACC
ACAAGGAGGTCGCCGTGAGGAGGACGGTGATGGCGGTGCTGCCGGAGCTG
GTGGCCTTCTTTCCGGGGGGCGCGGGGGAGTTCGTCGAGCCAGCCGTGTG
GTTCCTCATCAACACCCTCCGGCAGGTAAGGCAATTGTACAGCAGTGCGT
GGTTTTGGTTGTGCTGCTGCCGTGGTCGTGGTCGTGGTGGTAGGTTGGGT
GTTGGGCTTCCATCGCTGTACGTCGACGGCTCGAGGGACACTTGCTCGCT
CTTCGCTTGCATGCCCCCTTATCCTCTCCCTCTTCCTCTTTGTGGTTGCT
CACATCGGCGGCGTGCTTATTCCTTCCCTTCTCCGCACCCCCATTTGCTC
TCTCTCCCTTTGCTTGCGTGTGTGCCGCCTGCTCTTCCTCCTCGTTTTCT
GTCGGGTCGGCGCGGGGGCGGGGCGTACCGCAGGGCCAGCGAAGAGATCG
GGGCTTGGCCTACCTTTCGCTGGCGAGGCTCGGGCTGGCCGCGGGCACCG
GGGTGTGGCGCGGAGCCCCGACGCTGTGGCACAGCGTTCGGGAGGTGGTG
AAGGAAGGGCTGGCGGAGGACCGGCGCGACTTCTGCCCTCAATCTCTGGC
CTGTCTCGAGGTACATGCAGTGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15981:198..2322-

>mRNA_E-fasciculatus_F_contig15981.4095.1 ID=mRNA_E-fasciculatus_F_contig15981.4095.1|Name=mRNA_E-fasciculatus_F_contig15981.4095.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2316bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15981:198..2322- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGGCGGTGGTGCGTGTCCGGGCGGCCGCCGCCCTCGGGGCTATGCTGCA
GCTGGTGCACGAGAGGCAGAGCACGCCCAAGCACTCCCGACTCGTGCTAG
ACAAGATCGAAGAAGTCGGCGGTGGTGCGTGTCCGGGCGGCCGCCGCCCT
CGGGGCTATGCTGCAGCTGGTGCACGAGAGGCAGAGCACGCCCAAGCACT
CCCGACTCGTGCTAGACAAGATCGAAGAAGGCTTCGAGCAAGGAACGGCC
GAGCGAGTCCACGGGAGCCTCCTTGTCATCCGGCAGCTCCTGCGACACCC
GGGGCCCTGGATGGCGCACCGCAACCAGCGCCGCCGTCGACGCCGCCGGG
GGAGCACGGAAGACAACAACCACGGACCCTACTACGGCGGTGGCGGCAGC
GGCGGTGCGACTTCGGGAACGGCTACTCCGTTCGGAGGGGGCGCGGCGAC
GCCATTCGGAGGAGCGGCCACCCCTTTTGCGAGCAACAACAGCAGCGGCG
CGCGGCTGGCGCCTCAGATGCTCCCGCCGCCCGCGCGGGGCACTGCCTCC
GGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGTGACCTGTCGAAAATGTT
CGCCGGTGCCGCCACCCCCGTGGGTGCGCCAAGCACCGCCGGCAGCGGCG
GCGGCGGCGGTAACGCTGCTGGTGGGCCGTCCACGGCACAGTCGCAGAAA
GGCCGCGGTGCTTTCTTCCCCGAAGGCGGCGGCGGCAGCGTAGCGGCGAC
AGCGGCAGCGAGAGGCGTGGTACCCCCGCCCCCGTCCCCCCACCACCACA
ACTACCAGGCACCGGCAACACCGGTGCTGGGGATGCTGGGCGGGGGCGCG
GCGGCGGCGGCGGCGGTGGCGGCGGCGGCAGCGGCGGCAATGGCGGAGGC
CGGACAGGAGGAGGAGTATCGGGTCCTCTGCGAGAGGGTGCTGGCCCGCA
GGGACCACAAGGAGGTCGCCGTGAGGAGGACGGTGATGGCGGTGCTGCCG
GAGCTGGTGGCCTTCTTTCCGGGGGGCGCGGGGGAGTTCGTCGAGCCAGC
CGTGTGGTTCCTCATCAACACCCTCCGGCAGGCTTCGAGCAAGGAACGGC
CGAGCGAGTCCACGGGAGCCTCCTTGTCATCCGGCAGCTCCTGCGACACC
CGGGGCCCTGGATGGCGCACCGCAACCAGCGCCGCCGTCGACGCCGCCGG
GGGAGCACGGAAGACAACAACCACGGACCCTACTACGGCGGTGGCGGCAG
CGGCGGTGCGACTTCGGGAACGGCTACTCCGTTCGGAGGGGGCGCGGCGA
CGCCATTCGGAGGAGCGGCCACCCCTTTTGCGAGCAACAACAGCAGCGGC
GCGCGGCTGGCGCCTCAGATGCTCCCGCCGCCCGCGCGGGGCACTGCCTC
CGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGTGACCTGTCGAAAATGT
TCGCCGGTGCCGCCACCCCCGTGGGTGCGCCAAGCACCGCCGGCAGCGGC
GGCGGCGGCGGTAACGCTGCTGGTGGGCCGTCCACGGCACAGTCGCAGAA
AGGCCGCGGTGCTTTCTTCCCCGAAGGCGGCGGCGGCAGCGTAGCGGCGA
CAGCGGCAGCGAGAGGCGTGGTACCCCCGCCCCCGTCCCCCCACCACCAC
AACTACCAGGCACCGGCAACACCGGTGCTGGGGATGCTGGGCGGGGGCGC
GGCGGCGGCGGCGGCGGTGGCGGCGGCGGCAGCGGCGGCAATGGCGGAGG
CCGGACAGGAGGAGGAGTATCGGGTCCTCTGCGAGAGGGTGCTGGCCCGC
AGGGACCACAAGGAGGTCGCCGTGAGGAGGACGGTGATGGCGGTGCTGCC
GGAGCTGGTGGCCTTCTTTCCGGGGGGCGCGGGGGAGTTCGTCGAGCCAG
CCGTGTGGTTCCTCATCAACACCCTCCGGCAGGGCCAGCGAAGAGATCGG
GGCTTGGCCTACCTTTCGCTGGCGAGGCTCGGGCTGGCCGCGGGCACCGG
GGTGTGGCGCGGAGCCCCGACGCTGTGGCACAGCGTTCGGGAGGTGGTGA
AGGAAGGGCTGGCGGAGGACCGGCGCGACTTCTGCCCTCAATCTCTGGCC
TGTCTCGAGGTACATGCAGTGGTAGGCCAGCGAAGAGATCGGGGCTTGGC
CTACCTTTCGCTGGCGAGGCTCGGGCTGGCCGCGGGCACCGGGGTGTGGC
GCGGAGCCCCGACGCTGTGGCACAGCGTTCGGGAGGTGGTGAAGGAAGGG
CTGGCGGAGGACCGGCGCGACTTCTGCCCTCAATCTCTGGCCTGTCTCGA
GGTACATGCAGTGGTA
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