mRNA_E-fasciculatus_F_contig1598.4094.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1598.4094.1
Unique NamemRNA_E-fasciculatus_F_contig1598.4094.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1598.4094.1 vs. uniprot
Match: D8LSW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW2_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.070e-46
Identity = 82/95 (86.32%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:    1 MASMRQAGETSQSQASGGGQDPTASSGEQQQRQHVEEGGNVAHQSGNRMAEAMQRGGILGWGSYLTFAWAESFLKLGSTVTLKEEHLEGIYHKHE 285
            M S+RQA +TSQ QASGGGQ PTASS EQQQ QHVEEGGNVAHQSGN MAEAM+RGGILGWGSYLTFAWA  FLKLGSTVTLKEEHLEGIY KHE
Sbjct:    1 MGSVRQADQTSQGQASGGGQRPTASSREQQQSQHVEEGGNVAHQSGNLMAEAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHE 95
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BLAST of mRNA_E-fasciculatus_F_contig1598.4094.1 vs. uniprot
Match: A0A6H5JGA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA2_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.240e-44
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:    1 MASMRQAGETSQSQAS-GGGQDPTASSGEQQQRQHVEEGGNVAHQSGNRMAEAMQRGGILGWGSYLTFAWAESFLKLGSTVTLKEEHLEGIYHKHE 285
            MAS+RQA E SQ Q S GGGQ PTAS GEQQQ +HVEEGG+VAHQ GNRMAEAMQRGGILGWGSYLTFAWA  FLKLGST+TLKEEHLEGIYHKHE
Sbjct:    1 MASVRQADEASQGQTSIGGGQGPTASPGEQQQHEHVEEGGDVAHQPGNRMAEAMQRGGILGWGSYLTFAWAGPFLKLGSTITLKEEHLEGIYHKHE 96
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BLAST of mRNA_E-fasciculatus_F_contig1598.4094.1 vs. uniprot
Match: A0A6H5JHZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ3_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.150e-37
Identity = 77/97 (79.38%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 MASMRQAGETSQSQAS-GGGQDPTASSGEQQQRQHVEEGGNVAHQS-GNRMAEAMQRGGILGWGSYLTFAWAESFLKLGSTVTLKEEHLEGIYHKHE 285
            MAS+ QA +TSQ QAS  GGQD TASS EQQQRQH E+G NVAHQ   NRMA AM+RGGI+GWGSYLTFAWA SFLKLGSTVTLKEEHLEGIY KHE
Sbjct:    1 MASVCQADKTSQGQASVRGGQDATASSREQQQRQHAEDGENVAHQQPDNRMAAAMKRGGIMGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 97
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BLAST of mRNA_E-fasciculatus_F_contig1598.4094.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.740e-20
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:  145 MAEAMQRGGILGWGSYLTFAWAESFLKLGSTVTLKEEHLEGIYHKHE 285
            MAEA+QRGGILGWGSYLTFAWA  FLKLGSTVTLKEEHLEGIYHKHE
Sbjct:    1 MAEALQRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYHKHE 47
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BLAST of mRNA_E-fasciculatus_F_contig1598.4094.1 vs. uniprot
Match: A0A6H5K598_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K598_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.510e-19
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:  157 MQRGGILGWGSYLTFAWAESFLKLGSTVTLKEEHLEGIYHKHE 285
            M+RGGI+GWGSYLTFAWA SFLKLGSTVTLKEEHLEGIY KHE
Sbjct:   20 MKRGGIIGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 62
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1598.4094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSW2_ECTSI1.070e-4686.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGA2_9PHAE1.240e-4484.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHZ3_9PHAE2.150e-3779.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSW6_ECTSI1.740e-2093.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K598_9PHAE1.510e-1990.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1598contigE-fasciculatus_F_contig1598:13288..13572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue5.4e-17
Seed eggNOG ortholog2880.D8LSW6
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001640.1
Exons1
Model size285
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.599437-CDS-E-fasciculatus_F_contig1598:13287..135721622928065.599437-CDS-E-fasciculatus_F_contig1598:13287..13572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1598 13288..13572 -
1695995808.8560324-CDS-E-fasciculatus_F_contig1598:13287..135721695995808.8560324-CDS-E-fasciculatus_F_contig1598:13287..13572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1598 13288..13572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1598.4094.1prot_E-fasciculatus_F_contig1598.4094.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1598 13288..13572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1598.4094.1

>prot_E-fasciculatus_F_contig1598.4094.1 ID=prot_E-fasciculatus_F_contig1598.4094.1|Name=mRNA_E-fasciculatus_F_contig1598.4094.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=95bp
MASMRQAGETSQSQASGGGQDPTASSGEQQQRQHVEEGGNVAHQSGNRMA
EAMQRGGILGWGSYLTFAWAESFLKLGSTVTLKEEHLEGIYHKHE
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mRNA from alignment at E-fasciculatus_F_contig1598:13288..13572-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1598.4094.1 ID=mRNA_E-fasciculatus_F_contig1598.4094.1|Name=mRNA_E-fasciculatus_F_contig1598.4094.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=285bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1598:13288..13572- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTTCTATGCGTCAAGCCGGCGAGACCAGTCAAAGCCAAGCAAGCGG
AGGTGGCCAGGACCCGACTGCTTCATCCGGGGAACAGCAGCAACGCCAGC
ATGTTGAAGAGGGCGGAAACGTGGCCCATCAATCCGGCAACCGCATGGCG
GAAGCCATGCAGAGAGGAGGCATCTTGGGCTGGGGATCCTACTTGACGTT
CGCCTGGGCGGAGTCTTTCCTCAAGCTCGGCTCCACTGTCACCCTCAAGG
AGGAGCACCTAGAAGGGATCTACCACAAGCACGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1598:13288..13572-

>mRNA_E-fasciculatus_F_contig1598.4094.1 ID=mRNA_E-fasciculatus_F_contig1598.4094.1|Name=mRNA_E-fasciculatus_F_contig1598.4094.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=570bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1598:13288..13572- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTTCTATGCGTCAAGCCGGCGAGACCAGTCAAAGCCAAGCAAGCGG
AGGTGGCCAGGACCCGACTGCTTCATCCGGGGAACAGCAGCAACGCCAGC
ATGTTGAAGAGGGCGGAAACGTGGCCCATCAATCCGGCAACCGCATGGCG
GAAGCCATGCAGAGAGGAGGCATCTTGGGCTGGGGATCCTACTTGACGTT
CGCCTGGGCGGAGTCTTTCCTCAAGCTCGGCTCCACTGTCACCCTCAAGG
AGGAGCACCTAGAAGGGATCTACCACAAGCACGAGATGGCTTCTATGCGT
CAAGCCGGCGAGACCAGTCAAAGCCAAGCAAGCGGAGGTGGCCAGGACCC
GACTGCTTCATCCGGGGAACAGCAGCAACGCCAGCATGTTGAAGAGGGCG
GAAACGTGGCCCATCAATCCGGCAACCGCATGGCGGAAGCCATGCAGAGA
GGAGGCATCTTGGGCTGGGGATCCTACTTGACGTTCGCCTGGGCGGAGTC
TTTCCTCAAGCTCGGCTCCACTGTCACCCTCAAGGAGGAGCACCTAGAAG
GGATCTACCACAAGCACGAG
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