mRNA_E-fasciculatus_F_contig15976.4092.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15976.4092.1
Unique NamemRNA_E-fasciculatus_F_contig15976.4092.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15976.4092.1 vs. uniprot
Match: D7G9B9_ECTSI (Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9B9_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 3.800e-46
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 1
Query:    1 GGYDKRVPENVDHLSELKACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVESMCCGAPVIAVNSG 240
            GGYDKRVPENVDHLSEL+ACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVE+MCCGAPVIAVNSG
Sbjct:  330 GGYDKRVPENVDHLSELEACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVEAMCCGAPVIAVNSG 409          
BLAST of mRNA_E-fasciculatus_F_contig15976.4092.1 vs. uniprot
Match: A0A7S4JC65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JC65_9STRA)

HSP 1 Score: 101 bits (251), Expect = 9.290e-26
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    7 YDKRVPENVDHLSELKACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVESMCCGAPVIAVNSG 240
            YD R PENV+HLSEL+  AA L + S   FR NV+D  RA LLR A CV YTP REHFGIVP+E+M  G+PV+AV SG
Sbjct:    1 YDPRNPENVEHLSELRTLAADLDISSRASFRPNVSDAERARLLRSALCVAYTPHREHFGIVPLEAMYAGSPVVAVKSG 78          
BLAST of mRNA_E-fasciculatus_F_contig15976.4092.1 vs. uniprot
Match: A0A7S4JCA0_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JCA0_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.790e-25
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 GGYDKRVPENVDHLSELKACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVESMCCGAPVIAVNSG 240
            GGYD R PENV+HLSEL+  AA LG+ +   FR NV+D  RA LLR A CV YTP REHFGIVP+E+M  G+PV+AV SG
Sbjct:  395 GGYDPRNPENVEHLSELRTLAADLGISARASFRPNVSDAERARLLRSALCVAYTPHREHFGIVPLEAMYAGSPVVAVKSG 474          
BLAST of mRNA_E-fasciculatus_F_contig15976.4092.1 vs. uniprot
Match: UPI0018653D70 (alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018653D70)

HSP 1 Score: 105 bits (261), Expect = 5.010e-25
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 GGYDKRVPENVDHLSELKACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVESMCCGAPVIAVNSG 240
            GGYD+RVPENV+H +ELKA A+ LGLD  V F  + +D  +  LL  ++CVLYTPS EHFGIVPVE+M    PVIAVNSG
Sbjct:  254 GGYDERVPENVEHYAELKALASSLGLDDSVTFLRSFSDQQKVSLLHHSTCVLYTPSNEHFGIVPVEAMYTRCPVIAVNSG 333          
BLAST of mRNA_E-fasciculatus_F_contig15976.4092.1 vs. uniprot
Match: A0A7J7JTW2_BUGNE (ALG2 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JTW2_BUGNE)

HSP 1 Score: 100 bits (248), Expect = 5.900e-25
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 GGYDKRVPENVDHLSELKACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVESMCCGAPVIAVNSG 240
            GGYD RV ENV+H  EL+  AA L LD+LV F  +V+DD +  LL  A+C+LYTP REHFGIVPVE+M    PVIAVNSG
Sbjct:   19 GGYDDRVTENVEHYLELRKLAADLKLDNLVTFLCSVSDDDKLALLSAATCLLYTPDREHFGIVPVEAMYLRCPVIAVNSG 98          
BLAST of mRNA_E-fasciculatus_F_contig15976.4092.1 vs. uniprot
Match: UPI001B7EC84D (alpha-1,3/1,6-mannosyltransferase ALG2-like n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7EC84D)

HSP 1 Score: 100 bits (250), Expect = 8.670e-25
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 GGYDKRVPENVDHLSELKACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVESMCCGAPVIAVNSG 240
            GGYD+RVPENVDH  ELK  + +LGL   V F  + +D+ +  LL   +CVLYTPS EHFGIVPVE+M    PVIAVNSG
Sbjct:   64 GGYDERVPENVDHYMELKDLSTKLGLSDSVTFLRSFSDEQKISLLHHCTCVLYTPSNEHFGIVPVEAMYMRCPVIAVNSG 143          
BLAST of mRNA_E-fasciculatus_F_contig15976.4092.1 vs. uniprot
Match: A0A8J5J836_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J836_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.370e-23
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 GGYDKRVPENVDHLSELKACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVESMCCGAPVIAVNSG 240
            GGYD    EN +HL EL+  AA+ GL+  VEFRT+V++  + ELLRQA  +LYTP REHFGIVPVE+M CG PVIAV+SG
Sbjct: 1079 GGYDPLNTENKEHLIELQDVAAKHGLEEHVEFRTSVSNFMKLELLRQAHAILYTPDREHFGIVPVEAMACGTPVIAVSSG 1158          
BLAST of mRNA_E-fasciculatus_F_contig15976.4092.1 vs. uniprot
Match: A0A7S2MEI2_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MEI2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.840e-23
Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 GGYDKRVPENVDHLSELKACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVESMCCGAPVIAVNSG 240
            GGYD R  ENV HLSELK  A  L +   V+F  NV D  R+ LL+ A CV+YTP REHFGIVP+E+M  G+PVIAVNSG
Sbjct:   77 GGYDPRNIENVQHLSELKHLATNLQISDKVQFAPNVNDTQRSSLLKNALCVVYTPHREHFGIVPLEAMYAGSPVIAVNSG 156          
BLAST of mRNA_E-fasciculatus_F_contig15976.4092.1 vs. uniprot
Match: UPI001CFA5708 (alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFA5708)

HSP 1 Score: 100 bits (250), Expect = 1.870e-23
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 GGYDKRVPENVDHLSELKACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVESMCCGAPVIAVNSG 240
            GGYD+RV ENV+H  ELK   ++LGL S V F  + +D+ +  LL Q++CVLYTPS EHFGIVP+E+M C  PVIAVNSG
Sbjct:  254 GGYDERVTENVEHYKELKDTTSQLGLSSHVTFIRSFSDEQKKLLLHQSTCVLYTPSNEHFGIVPLEAMYCRCPVIAVNSG 333          
BLAST of mRNA_E-fasciculatus_F_contig15976.4092.1 vs. uniprot
Match: A0A3P8XUC1_ESOLU (Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XUC1_ESOLU)

HSP 1 Score: 100 bits (250), Expect = 2.400e-23
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 GGYDKRVPENVDHLSELKACAARLGLDSLVEFRTNVADDARAELLRQASCVLYTPSREHFGIVPVESMCCGAPVIAVNSG 240
            GGYD RV ENV H +ELK  AA+LG+D+ V F  + +D  +  LLR ++ VLYTPSREHFGIVP+E+M CG PVIAV+SG
Sbjct:  283 GGYDGRVIENVQHYTELKELAAQLGVDNSVTFLRSPSDSQKVALLRGSAAVLYTPSREHFGIVPLEAMHCGCPVIAVSSG 362          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15976.4092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9B9_ECTSI3.800e-4697.50Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ect... [more]
A0A7S4JC65_9STRA9.290e-2662.82Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4JCA0_9STRA1.790e-2563.75Alpha-1,3/1,6-mannosyltransferase ALG2 (Fragment) ... [more]
UPI0018653D705.010e-2562.50alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Meg... [more]
A0A7J7JTW2_BUGNE5.900e-2562.50ALG2 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A... [more]
UPI001B7EC84D8.670e-2560.00alpha-1,3/1,6-mannosyltransferase ALG2-like n=1 Ta... [more]
A0A8J5J836_9STRA1.370e-2362.50Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A7S2MEI2_9STRA1.840e-2361.25Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Hel... [more]
UPI001CFA57081.870e-2360.00alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Pro... [more]
A0A3P8XUC1_ESOLU2.400e-2361.25Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Eso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15976contigE-fasciculatus_F_contig15976:399..1477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue6.1e-38
Seed eggNOG ortholog2880.D7G9B9
Preferred nameALG2
KEGG rclassRC00005,RC00028,RC02748
KEGG koko:K00695,ko:K03843,ko:K12188,ko:K20296
KEGG ReactionR00806,R05973,R06238
KEGG Pathwayko00500,ko00510,ko00513,ko01100,ko04144,map00500,map00510,map00513,map01100,map04144
KEGG ModuleM00055,M00410
GOsGO:0000009,GO:0000030,GO:0000033,GO:0003674,GO:0003824,GO:0004376,GO:0004378,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0015629,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033164,GO:0033577,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046982,GO:0046983,GO:0047485,GO:0048306,GO:0048471,GO:0050896,GO:0051592,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.sucrose synthase activity
EggNOG OGsCOG0438@1,KOG0853@2759
EC2.4.1.13,2.4.1.132,2.4.1.257
COG Functional cat.M
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.3972268-CDS-E-fasciculatus_F_contig15976:398..5231622928065.3972268-CDS-E-fasciculatus_F_contig15976:398..523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15976 399..523 -
1695995808.7739735-CDS-E-fasciculatus_F_contig15976:398..5231695995808.7739735-CDS-E-fasciculatus_F_contig15976:398..523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15976 399..523 -
1622928065.4137208-CDS-E-fasciculatus_F_contig15976:1362..14771622928065.4137208-CDS-E-fasciculatus_F_contig15976:1362..1477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15976 1363..1477 -
1695995808.7982342-CDS-E-fasciculatus_F_contig15976:1362..14771695995808.7982342-CDS-E-fasciculatus_F_contig15976:1362..1477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15976 1363..1477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15976.4092.1prot_E-fasciculatus_F_contig15976.4092.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15976 399..1477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15976.4092.1

>prot_E-fasciculatus_F_contig15976.4092.1 ID=prot_E-fasciculatus_F_contig15976.4092.1|Name=mRNA_E-fasciculatus_F_contig15976.4092.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=80bp
GGYDKRVPENVDHLSELKACAARLGLDSLVEFRTNVADDARAELLRQASC
VLYTPSREHFGIVPVESMCCGAPVIAVNSG
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mRNA from alignment at E-fasciculatus_F_contig15976:399..1477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15976.4092.1 ID=mRNA_E-fasciculatus_F_contig15976.4092.1|Name=mRNA_E-fasciculatus_F_contig15976.4092.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1079bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15976:399..1477- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGTACGACAAGCGTGTGCCGGAGAACGTGGATCACTTGTCCGAGCT CAAGGCTTGCGCCGCAAGGCTCGGTCTGGACAGCCTCGTGGAGTTCCGGA CTAACGTTGCCGACGGTAAGGCGGGGGGGCACGCGGAAAGTTCGAACTAA GTTCTTTCTTTATGTTATTTTTTTGCAGATGGTTTGTGTAATGGTTGGTT GGGTACGAAAGGGCTGGAGACCGGTGGTACAGGGGTAGCCACCTGCGCTG CACCGCGTGCACACGTGTGTCGAGAAGGTACTTCCTCTTTTATTCACTTT TCTTCATTTGACCCGGCGGTGCGTGTGATGATGTTACCGTTCGGCTTCTC CCTGCCGATGACGCATGCCGGAGGTCGCGGCGTAGAAGGCGACGCCAACA GATCCATGAATTTATCTCCTCTGCTGCTAGTGTCAAGATTGAGTCGCTGG TTCTACACTCTGCAGGCGCCACCGGCGAGAGTGTGTTGTTTCTCCGCTTG CCTGGCTCATTCTCGCTCGCTCGTCATTCCTGCGCAAGTGAAACAAGGCC AGCTTCCGTGTCTCGTCGCTCCTGTCGATTGCCCGCTTCCACCTGCCGAA GTAGTAGGGACGGGATATCGCGGTTGTTCGTCAACGGACTGTTTCTACGT AGCTGCACACCAATTTTCTTTTCGCAGGTACAGCAGTATTTTGTCATCAT ACGTCCCCCCCCCGCGGGACCTGCATCCTCTGTCTACCTCCCCAACCACA CACAACACACACAGAAAAACGAAGCTAGCGCGGTCGATGAAAAATATTTT AAAATACACTCACACACACGTACAGGATTGCCTACCCCGTCCTATGTCCA GAAAGTTCCATCATGCGCCCCCTCCGCATCCTCTCTCTACACCCCCCCCC ACCTTGCTGCCTCGTGTGTAACGCCCGTTTGCCGCACCCCCGCCGCGTGC CCAGACGCAAGAGCTGAGCTGCTGCGACAGGCGTCGTGCGTGCTCTACAC CCCGTCCCGCGAGCACTTCGGCATCGTTCCCGTGGAGTCGATGTGTTGCG GGGCCCCCGTGATTGCGGTGAACTCGGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15976:399..1477-

>mRNA_E-fasciculatus_F_contig15976.4092.1 ID=mRNA_E-fasciculatus_F_contig15976.4092.1|Name=mRNA_E-fasciculatus_F_contig15976.4092.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15976:399..1477- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGTACGACAAGCGTGTGCCGGAGAACGTGGATCACTTGTCCGAGCT
CAAGGCTTGCGCCGCAAGGCTCGGTCTGGACAGCCTCGTGGAGTTCCGGA
CTAACGTTGCCGACGGGGGGGTACGACAAGCGTGTGCCGGAGAACGTGGA
TCACTTGTCCGAGCTCAAGGCTTGCGCCGCAAGGCTCGGTCTGGACAGCC
TCGTGGAGTTCCGGACTAACGTTGCCGACGACGCAAGAGCTGAGCTGCTG
CGACAGGCGTCGTGCGTGCTCTACACCCCGTCCCGCGAGCACTTCGGCAT
CGTTCCCGTGGAGTCGATGTGTTGCGGGGCCCCCGTGATTGCGGTGAACT
CGGGTACGCAAGAGCTGAGCTGCTGCGACAGGCGTCGTGCGTGCTCTACA
CCCCGTCCCGCGAGCACTTCGGCATCGTTCCCGTGGAGTCGATGTGTTGC
GGGGCCCCCGTGATTGCGGTGAACTCGGGT
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