mRNA_E-fasciculatus_F_contig15970.4091.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15970.4091.1
Unique NamemRNA_E-fasciculatus_F_contig15970.4091.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15970.4091.1 vs. uniprot
Match: A0A6H5JK21_9PHAE (MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK21_9PHAE)

HSP 1 Score: 389 bits (999), Expect = 6.630e-125
Identity = 330/513 (64.33%), Postives = 343/513 (66.86%), Query Frame = 1 
Query:    1 DRAEMHSFQQEKAQLLSAARANGDTEKRKMLEETTPDVLNAKGLLMFLRQSPSSESPSPSGSPELQPATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA-------------------------------VAPSRAGFAAGKASTAYSAAVAAVEPETTVRPPARPFAGPFPANGDGGGREQGLRGNREGGEQF-----SYRAPSSPPASVVDFLPSRPWSGSSGGSNVGAVTGVRRGGGGASSTPVPALPATPAGRSVFGDVGGGRPAVPASGAVMAAPRTAPKPRKPRFRIPVVTPSPSSTANTNSQPSRAPLAAHRATPPTPRSSGPSTS-TPYSIGVASAAAGPQQAAVAVTPGTPSVRRSPAELFTPSPLPSTAAGGGAGWRVAGSSAAAAAYPNPSP---AFDGRRCSSPK-RDAPPAAQGKVGRNGGSRXXXXXXXXXXXXXXXXXXXXXVEEAQKRPRASAV 1416
            DRAEMHSFQQEKAQLLSAARANGDTEKRKMLEETTPDVLNAKGLLMFLRQSPSSE+PSPS SPELQPATG A XXXXXXXXXXX XXXXXXXXXXXXXXXXXX                    XXXXXXXXXXXXXXXXX                                 VAP+RAGFAA            A  PE TV+PPARPFAGP  ANGDGGGRE+GL GNREGGEQ      SYRAP +P  +VVDFLPSRPWSG+ G  +VGAV GVRRG   ASSTPVP  PATPA RSVFGDVGGGRPAVPA+G  M APRTAPKPRKPRFRIPVVTPSPSST N NSQP RAPLA H ATPPTPRSSGP+T+ TP SIGVASAAA PQQ  VAVTPGTPS R SP ELFTPSP+PS+                             FDGRRC SPK    PP A  K GRNGGSR                     VE AQKRPRASAV
Sbjct:  242 DRAEMHSFQQEKAQLLSAARANGDTEKRKMLEETTPDVLNAKGLLMFLRQSPSSETPSPSASPELQPATGPAAXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXGWVGEGLVLEGDGRRDSSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPARAGFAA------------AAAPERTVQPPARPFAGPCLANGDGGGRERGLTGNREGGEQDGGRCGSYRAPPAP-VNVVDFLPSRPWSGNGG--SVGAVIGVRRG---ASSTPVPVSPATPACRSVFGDVGGGRPAVPATGTAMTAPRTAPKPRKPRFRIPVVTPSPSSTPNANSQPRRAPLAVHHATPPTPRSSGPNTTATPDSIGVASAAAAPQQ--VAVTPGTPSARWSPVELFTPSPVPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFDGRRCRSPKCTSIPPDA--KAGRNGGSRAASSKRKQEEEGRK-------VEGAQKRPRASAV 725
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15970.4091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JK21_9PHAE6.630e-12564.33MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15970contigE-fasciculatus_F_contig15970:1056..2474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.9
Seed ortholog evalue6.8e-105
Seed eggNOG ortholog2880.D8LCT4
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-07_006800.1
Exons1
Model size1419
Cds size1407
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.3427165-CDS-E-fasciculatus_F_contig15970:1055..24621622928065.3427165-CDS-E-fasciculatus_F_contig15970:1055..2462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15970 1056..2462 -
1695995808.7300277-CDS-E-fasciculatus_F_contig15970:1055..24621695995808.7300277-CDS-E-fasciculatus_F_contig15970:1055..2462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15970 1056..2462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.3597543-UTR-E-fasciculatus_F_contig15970:2462..24741622928065.3597543-UTR-E-fasciculatus_F_contig15970:2462..2474Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15970 2463..2474 -
1695995808.753928-UTR-E-fasciculatus_F_contig15970:2462..24741695995808.753928-UTR-E-fasciculatus_F_contig15970:2462..2474Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15970 2463..2474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15970.4091.1prot_E-fasciculatus_F_contig15970.4091.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15970 1056..2462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15970.4091.1

>prot_E-fasciculatus_F_contig15970.4091.1 ID=prot_E-fasciculatus_F_contig15970.4091.1|Name=mRNA_E-fasciculatus_F_contig15970.4091.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=469bp
MHSFQQEKAQLLSAARANGDTEKRKMLEETTPDVLNAKGLLMFLRQSPSS
ESPSPSGSPELQPATGAAAAAAAAAAGGGGLVLDGSRRSSSPAGDDDDER
AGGDGRGGGGHHYGGRAGKAAVAFSGGGVCAAAAEEAAVAPSRAGFAAGK
ASTAYSAAVAAVEPETTVRPPARPFAGPFPANGDGGGREQGLRGNREGGE
QFSYRAPSSPPASVVDFLPSRPWSGSSGGSNVGAVTGVRRGGGGASSTPV
PALPATPAGRSVFGDVGGGRPAVPASGAVMAAPRTAPKPRKPRFRIPVVT
PSPSSTANTNSQPSRAPLAAHRATPPTPRSSGPSTSTPYSIGVASAAAGP
QQAAVAVTPGTPSVRRSPAELFTPSPLPSTAAGGGAGWRVAGSSAAAAAY
PNPSPAFDGRRCSSPKRDAPPAAQGKVGRNGGSRAASSSKRKQQEEEEEA
GERRRVEEAQKRPRASAV*
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mRNA from alignment at E-fasciculatus_F_contig15970:1056..2474-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15970.4091.1 ID=mRNA_E-fasciculatus_F_contig15970.4091.1|Name=mRNA_E-fasciculatus_F_contig15970.4091.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1419bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15970:1056..2474- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACCGAGCCGAGATGCACAGCTTCCAGCAGGAGAAGGCTCAGCTCCTCTC
CGCCGCCCGCGCGAACGGCGACACGGAAAAGCGGAAGATGCTGGAAGAGA
CCACCCCGGATGTCCTCAACGCCAAGGGGCTCTTGATGTTCCTTCGGCAG
TCGCCCTCCTCGGAGTCGCCCTCTCCGTCCGGTAGCCCGGAGCTTCAGCC
TGCCACTGGAGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGGGGGGGGTG
GGCTGGTGCTCGACGGCAGTAGGAGGAGCTCGAGCCCGGCAGGGGATGAT
GATGATGAGAGGGCGGGCGGCGACGGCCGTGGCGGTGGTGGGCACCACTA
CGGCGGCAGGGCGGGGAAGGCCGCGGTGGCCTTCTCTGGAGGAGGCGTGT
GCGCGGCGGCGGCGGAGGAGGCGGCAGTTGCCCCATCGCGGGCGGGTTTC
GCGGCGGGGAAGGCGTCGACGGCTTACTCTGCGGCGGTGGCGGCGGTGGA
ACCAGAAACAACAGTGCGGCCACCGGCCCGACCTTTCGCGGGGCCGTTCC
CAGCGAACGGAGACGGCGGTGGCCGGGAGCAGGGTCTTAGAGGTAACCGT
GAAGGCGGAGAGCAGTTTTCCTACCGCGCGCCTTCTTCGCCGCCCGCCAG
TGTTGTCGATTTTTTGCCGTCACGGCCGTGGAGTGGTAGTAGTGGGGGAA
GCAATGTCGGTGCTGTCACCGGCGTGCGCCGTGGTGGCGGGGGTGCTAGC
TCGACCCCCGTGCCGGCGTTGCCGGCTACGCCCGCCGGTCGTTCTGTGTT
TGGTGATGTCGGTGGCGGCCGCCCCGCGGTCCCCGCTAGCGGTGCGGTGA
TGGCCGCCCCAAGAACCGCGCCGAAGCCTAGGAAGCCGCGGTTTAGGATC
CCCGTGGTGACGCCGAGCCCGTCCTCGACGGCCAACACTAACAGCCAGCC
CAGCCGGGCTCCGCTCGCCGCTCATCGTGCAACTCCGCCGACTCCGAGGT
CATCGGGCCCCAGTACATCGACGCCTTATTCGATCGGCGTCGCTTCGGCG
GCGGCGGGCCCGCAGCAAGCCGCCGTGGCCGTGACTCCGGGGACGCCGTC
GGTGAGGCGGTCGCCGGCGGAGCTGTTTACGCCGTCGCCGCTGCCGTCGA
CCGCGGCGGGCGGCGGCGCCGGATGGCGCGTCGCGGGTAGTAGCGCTGCT
GCTGCTGCTTACCCTAACCCTTCCCCCGCTTTCGACGGCCGCCGGTGTAG
TTCGCCGAAACGGGATGCCCCCCCCGCGGCACAGGGGAAGGTGGGGCGAA
ACGGCGGCAGTCGCGCCGCGTCATCGTCGAAGCGCAAGCAGCAGGAGGAG
GAGGAGGAGGCGGGAGAGAGGCGGAGGGTGGAAGAGGCGCAGAAGCGGCC
AAGAGCTTCCGCTGTCTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15970:1056..2474-

>mRNA_E-fasciculatus_F_contig15970.4091.1 ID=mRNA_E-fasciculatus_F_contig15970.4091.1|Name=mRNA_E-fasciculatus_F_contig15970.4091.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2814bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15970:1056..2474- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACAGCTTCCAGCAGGAGAAGGCTCAGCTCCTCTCCGCCGCCCGCGC
GAACGGCGACACGGAAAAGCGGAAGATGCTGGAAGAGACCACCCCGGATG
TCCTCAACGCCAAGGGGCTCTTGATGTTCCTTCGGCAGTCGCCCTCCTCG
GAGTCGCCCTCTCCGTCCGGTAGCCCGGAGCTTCAGCCTGCCACTGGAGC
GGCGGCGGCAGCGGCGGCGGCGGCGGCGGGGGGGGGTGGGCTGGTGCTCG
ACGGCAGTAGGAGGAGCTCGAGCCCGGCAGGGGATGATGATGATGAGAGG
GCGGGCGGCGACGGCCGTGGCGGTGGTGGGCACCACTACGGCGGCAGGGC
GGGGAAGGCCGCGGTGGCCTTCTCTGGAGGAGGCGTGTGCGCGGCGGCGG
CGGAGGAGGCGGCAGTTGCCCCATCGCGGGCGGGTTTCGCGGCGGGGAAG
GCGTCGACGGCTTACTCTGCGGCGGTGGCGGCGGTGGAACCAGAAACAAC
AGTGCGGCCACCGGCCCGACCTTTCGCGGGGCCGTTCCCAGCGAACGGAG
ACGGCGGTGGCCGGGAGCAGGGTCTTAGAGGTAACCGTGAAGGCGGAGAG
CAGTTTTCCTACCGCGCGCCTTCTTCGCCGCCCGCCAGTGTTGTCGATTT
TTTGCCGTCACGGCCGTGGAGTGGTAGTAGTGGGGGAAGCAATGTCGGTG
CTGTCACCGGCGTGCGCCGTGGTGGCGGGGGTGCTAGCTCGACCCCCGTG
CCGGCGTTGCCGGCTACGCCCGCCGGTCGTTCTGTGTTTGGTGATGTCGG
TGGCGGCCGCCCCGCGGTCCCCGCTAGCGGTGCGGTGATGGCCGCCCCAA
GAACCGCGCCGAAGCCTAGGAAGCCGCGGTTTAGGATCCCCGTGGTGACG
CCGAGCCCGTCCTCGACGGCCAACACTAACAGCCAGCCCAGCCGGGCTCC
GCTCGCCGCTCATCGTGCAACTCCGCCGACTCCGAGGTCATCGGGCCCCA
GTACATCGACGCCTTATTCGATCGGCGTCGCTTCGGCGGCGGCGGGCCCG
CAGCAAGCCGCCGTGGCCGTGACTCCGGGGACGCCGTCGGTGAGGCGGTC
GCCGGCGGAGCTGTTTACGCCGTCGCCGCTGCCGTCGACCGCGGCGGGCG
GCGGCGCCGGATGGCGCGTCGCGGGTAGTAGCGCTGCTGCTGCTGCTTAC
CCTAACCCTTCCCCCGCTTTCGACGGCCGCCGGTGTAGTTCGCCGAAACG
GGATGCCCCCCCCGCGGCACAGGGGAAGGTGGGGCGAAACGGCGGCAGTC
GCGCCGCGTCATCGTCGAAGCGCAAGCAGCAGGAGGAGGAGGAGGAGGCG
GGAGAGAGGCGGAGGGTGGAAGAGGCGCAGAAGCGGCCAAGAGCTTCCGC
TGTCTAAATGCACAGCTTCCAGCAGGAGAAGGCTCAGCTCCTCTCCGCCG
CCCGCGCGAACGGCGACACGGAAAAGCGGAAGATGCTGGAAGAGACCACC
CCGGATGTCCTCAACGCCAAGGGGCTCTTGATGTTCCTTCGGCAGTCGCC
CTCCTCGGAGTCGCCCTCTCCGTCCGGTAGCCCGGAGCTTCAGCCTGCCA
CTGGAGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGGGGGGGGTGGGCTG
GTGCTCGACGGCAGTAGGAGGAGCTCGAGCCCGGCAGGGGATGATGATGA
TGAGAGGGCGGGCGGCGACGGCCGTGGCGGTGGTGGGCACCACTACGGCG
GCAGGGCGGGGAAGGCCGCGGTGGCCTTCTCTGGAGGAGGCGTGTGCGCG
GCGGCGGCGGAGGAGGCGGCAGTTGCCCCATCGCGGGCGGGTTTCGCGGC
GGGGAAGGCGTCGACGGCTTACTCTGCGGCGGTGGCGGCGGTGGAACCAG
AAACAACAGTGCGGCCACCGGCCCGACCTTTCGCGGGGCCGTTCCCAGCG
AACGGAGACGGCGGTGGCCGGGAGCAGGGTCTTAGAGGTAACCGTGAAGG
CGGAGAGCAGTTTTCCTACCGCGCGCCTTCTTCGCCGCCCGCCAGTGTTG
TCGATTTTTTGCCGTCACGGCCGTGGAGTGGTAGTAGTGGGGGAAGCAAT
GTCGGTGCTGTCACCGGCGTGCGCCGTGGTGGCGGGGGTGCTAGCTCGAC
CCCCGTGCCGGCGTTGCCGGCTACGCCCGCCGGTCGTTCTGTGTTTGGTG
ATGTCGGTGGCGGCCGCCCCGCGGTCCCCGCTAGCGGTGCGGTGATGGCC
GCCCCAAGAACCGCGCCGAAGCCTAGGAAGCCGCGGTTTAGGATCCCCGT
GGTGACGCCGAGCCCGTCCTCGACGGCCAACACTAACAGCCAGCCCAGCC
GGGCTCCGCTCGCCGCTCATCGTGCAACTCCGCCGACTCCGAGGTCATCG
GGCCCCAGTACATCGACGCCTTATTCGATCGGCGTCGCTTCGGCGGCGGC
GGGCCCGCAGCAAGCCGCCGTGGCCGTGACTCCGGGGACGCCGTCGGTGA
GGCGGTCGCCGGCGGAGCTGTTTACGCCGTCGCCGCTGCCGTCGACCGCG
GCGGGCGGCGGCGCCGGATGGCGCGTCGCGGGTAGTAGCGCTGCTGCTGC
TGCTTACCCTAACCCTTCCCCCGCTTTCGACGGCCGCCGGTGTAGTTCGC
CGAAACGGGATGCCCCCCCCGCGGCACAGGGGAAGGTGGGGCGAAACGGC
GGCAGTCGCGCCGCGTCATCGTCGAAGCGCAAGCAGCAGGAGGAGGAGGA
GGAGGCGGGAGAGAGGCGGAGGGTGGAAGAGGCGCAGAAGCGGCCAAGAG
CTTCCGCTGTCTAA
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