mRNA_E-fasciculatus_F_contig15970.4090.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15970.4090.1
Unique NamemRNA_E-fasciculatus_F_contig15970.4090.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15970.4090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15970contigE-fasciculatus_F_contig15970:519..695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_006810.1
Exons1
Model size177
Cds size177
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.2941177-CDS-E-fasciculatus_F_contig15970:518..6951622928065.2941177-CDS-E-fasciculatus_F_contig15970:518..695Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15970 519..695 -
1695995808.7172325-CDS-E-fasciculatus_F_contig15970:518..6951695995808.7172325-CDS-E-fasciculatus_F_contig15970:518..695Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15970 519..695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15970.4090.1prot_E-fasciculatus_F_contig15970.4090.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15970 519..695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15970.4090.1

>prot_E-fasciculatus_F_contig15970.4090.1 ID=prot_E-fasciculatus_F_contig15970.4090.1|Name=mRNA_E-fasciculatus_F_contig15970.4090.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=59bp
MLSVRWPTWKCVECRVGAMFQAFECNGVVPCCCCCCCRTPRCPYVACRRS
PPTPPPRE*
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mRNA from alignment at E-fasciculatus_F_contig15970:519..695-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15970.4090.1 ID=mRNA_E-fasciculatus_F_contig15970.4090.1|Name=mRNA_E-fasciculatus_F_contig15970.4090.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=177bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15970:519..695- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTCTGTCCGTTGGCCTACCTGGAAGTGCGTCGAGTGTAGGGTTGG
AGCAATGTTTCAGGCTTTCGAGTGTAATGGCGTTGTGCCGTGCTGCTGCT
GCTGCTGCTGCCGCACACCCCGTTGTCCGTACGTGGCGTGTCGTAGGAGC
CCCCCCACCCCACCCCCCCGCGAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15970:519..695-

>mRNA_E-fasciculatus_F_contig15970.4090.1 ID=mRNA_E-fasciculatus_F_contig15970.4090.1|Name=mRNA_E-fasciculatus_F_contig15970.4090.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15970:519..695- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTCTGTCCGTTGGCCTACCTGGAAGTGCGTCGAGTGTAGGGTTGG
AGCAATGTTTCAGGCTTTCGAGTGTAATGGCGTTGTGCCGTGCTGCTGCT
GCTGCTGCTGCCGCACACCCCGTTGTCCGTACGTGGCGTGTCGTAGGAGC
CCCCCCACCCCACCCCCCCGCGAGTGAATGTTGTCTGTCCGTTGGCCTAC
CTGGAAGTGCGTCGAGTGTAGGGTTGGAGCAATGTTTCAGGCTTTCGAGT
GTAATGGCGTTGTGCCGTGCTGCTGCTGCTGCTGCTGCCGCACACCCCGT
TGTCCGTACGTGGCGTGTCGTAGGAGCCCCCCCACCCCACCCCCCCGCGA
GTGA
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