mRNA_E-fasciculatus_F_contig1597.4087.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1597.4087.1 vs. uniprot
Match: D7FKW5_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW5_ECTSI) HSP 1 Score: 486 bits (1252), Expect = 1.110e-165 Identity = 298/411 (72.51%), Postives = 307/411 (74.70%), Query Frame = 2
Query: 50 MESLGALTYRELQALAKRHGVKANGSRVDLIHRLSDTHGGDDDTPVEDNTQPGSDESTPGVPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTLDKPHGACVQPQDDSDPDMSQGKSATQQALVEDTPAEPEPCSGGEVVKRRKSERISATMKVISRCGDTPQKTKVKLPVAGSFERAHQNXXXXXXXXXXXXXXXXXSAPAKTNVPLSKTKASASKAKVFSPTIAGRFERAHQNLFASQASIERYGKTPKKSASTKENVPLSKTKASASKAKVFSPTPVRPVASGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKREAFTFKPYTGPLRPIMPANNSSFNIGHAPKNGSNPVRPKGIKATLASGKAQKARKEAHVESSKAQRDRKLAEARFGRA 1282
MESLG LTYRELQA AKRHGVKANGSRVDLI RLSDTHGGDDDTPVEDNTQPGSDE PDT XXXXXXXXXXXXXX L TLDKPHG CVQ Q DSDPD SQ + Q LV DTPAEPEPC+G +V +RRKSER+SATMK G+TPQKTKVKLPVAG RFERAHQNLFASQASIERYGKTPKKSA KEN PLSKTKA AS AKVF+PTPVRPV SGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKRE FTFKPYTGPLRPI+PANNSSFNIGHAPK GSNPVR KGIKATLASGKAQKARKEAHVESSKAQRDRKLA+ARFGRA
Sbjct: 1 MESLGTLTYRELQAFAKRHGVKANGSRVDLIQRLSDTHGGDDDTPVEDNTQPGSDER----PDTDXXXXXXXXXXXXXXGTTLGVPDTDADNLATLDKPHGTCVQSQHDSDPDKSQQGKSDSQVLVTDTPAEPEPCAGEDVAERRKSERVSATMKETRTTGETPQKTKVKLPVAG------------------------------------------------------RFERAHQNLFASQASIERYGKTPKKSAPAKENAPLSKTKAFASTAKVFAPTPVRPVPSGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKRETFTFKPYTGPLRPIVPANNSSFNIGHAPKKGSNPVRAKGIKATLASGKAQKARKEAHVESSKAQRDRKLADARFGRA 353
BLAST of mRNA_E-fasciculatus_F_contig1597.4087.1 vs. uniprot
Match: A0A6H5K5M9_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M9_9PHAE) HSP 1 Score: 439 bits (1128), Expect = 5.750e-147 Identity = 283/411 (68.86%), Postives = 297/411 (72.26%), Query Frame = 2
Query: 50 MESLGALTYRELQALAKRHGVKANGSRVDLIHRLSDTHGGDDDTPVEDNTQPGSDESTPGVPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTLDKPHGACVQPQDDSDPDMSQGKSATQQALVEDTPAEPEPCSGGEVVKRRKSERISATMKVISRCGDTPQKTKVKLPVAGSFERAHQNXXXXXXXXXXXXXXXXXSAPAKTNVPLSKTKASASKAKVFSPTIAGRFERAHQNLFASQASIERYGKTPKKSASTKENVPLSKTKASASKAKVFSPTPVRPVASGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKREAFTFKPYTGPLRPIMPANNSSFNIGHAPKNGSNPVRPKGIKATLASGKAQKARKEAHVESSKAQRDRKLAEARFGRA 1282
MESLG+LTYRELQA AKRHGVKANGSRVDLI RL DTHGGDDDTPVEDNTQPGSD+ PDTXXXXXXXXXXXXXXX LVT D+PHGA VQ Q+DSD D SQ + QALV DTPAEP+P + G+V +R KS AT+K G TPQKTKVKLPVAG RFERAHQ+LFASQASIERYGKTPKKSA K NVPLSKTKASA KAKVF+ TPVRPV SGS AKSSVKRGLTVAS PCTLVVQRSTKKPTQVKEFRLSSNQTGKRE FTFKPYTGPLRPI+ ANN SFNIGHAPK GSNPVRPKGIKATLASGK QKAR+EAHVESSKAQRDRKLAEAR GRA
Sbjct: 1 MESLGSLTYRELQAFAKRHGVKANGSRVDLIQRLCDTHGGDDDTPVEDNTQPGSDDR----PDTXXXXXXXXXXXXXXXGTTLGVSDTDADNLVTRDRPHGAFVQSQNDSDLDKSQQGKSDSQALVTDTPAEPQPRAVGDVAERCKSGNY-ATIKETRTTGGTPQKTKVKLPVAG------------------------------------------------------RFERAHQSLFASQASIERYGKTPKKSAPAKGNVPLSKTKASAPKAKVFASTPVRPVDSGSGAKSSVKRGLTVASMPCTLVVQRSTKKPTQVKEFRLSSNQTGKRETFTFKPYTGPLRPIVSANNYSFNIGHAPKKGSNPVRPKGIKATLASGKGQKARREAHVESSKAQRDRKLAEARCGRA 352 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1597.4087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1597.4087.1 >prot_E-fasciculatus_F_contig1597.4087.1 ID=prot_E-fasciculatus_F_contig1597.4087.1|Name=mRNA_E-fasciculatus_F_contig1597.4087.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=412bp MESLGALTYRELQALAKRHGVKANGSRVDLIHRLSDTHGGDDDTPVEDNTback to top mRNA from alignment at E-fasciculatus_F_contig1597:3628..7395- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1597.4087.1 ID=mRNA_E-fasciculatus_F_contig1597.4087.1|Name=mRNA_E-fasciculatus_F_contig1597.4087.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3768bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1597:3628..7395- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1597:3628..7395- >mRNA_E-fasciculatus_F_contig1597.4087.1 ID=mRNA_E-fasciculatus_F_contig1597.4087.1|Name=mRNA_E-fasciculatus_F_contig1597.4087.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2472bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1597:3628..7395- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |