mRNA_E-fasciculatus_F_contig15964.4085.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15964.4085.1
Unique NamemRNA_E-fasciculatus_F_contig15964.4085.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15964.4085.1 vs. uniprot
Match: D8LTI4_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI4_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 6.520e-53
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:    1 QISRKMENVSITRDVSGEGVQQALLKILEANPIRGAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPDMQ 303
            +ISRKMENVSITRDVSGEGVQQALLKILE     GAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNP+MQ
Sbjct:  389 KISRKMENVSITRDVSGEGVQQALLKILE-----GAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPEMQ 484
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BLAST of mRNA_E-fasciculatus_F_contig15964.4085.1 vs. uniprot
Match: A0A7S2DR46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DR46_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.600e-44
Identity = 75/101 (74.26%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 QISRKMENVSITRDVSGEGVQQALLKILEANPIRGAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPDMQ 303
            +ISRK ENVSITRDVSGEGVQQALLKILE     G++VNVPKDGGRKNPR DFIQ+DTTN+LFICGGAFAGLE +IN R+AK+SIGF A +  +L N D+Q
Sbjct:   77 KISRKSENVSITRDVSGEGVQQALLKILE-----GSLVNVPKDGGRKNPRGDFIQIDTTNVLFICGGAFAGLEGIINRRVAKASIGFEAQMQVNLQNADIQ 172
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BLAST of mRNA_E-fasciculatus_F_contig15964.4085.1 vs. uniprot
Match: A0A835Z4A9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4A9_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.040e-39
Identity = 70/102 (68.63%), Postives = 86/102 (84.31%), Query Frame = 1 
Query:    1 QISRKMENVSITRDVSGEGVQQALLKILEANPIRGAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPDMQV 306
            +ISRK ENVSITRDVSGEGVQQALLK+LE     G +VNVPK+GGRKNPR DFI +DTTNI+FICGGAF+GLEH++N R +++SIGFGAN+  +L + D+Q 
Sbjct:  220 KISRKSENVSITRDVSGEGVQQALLKMLE-----GTVVNVPKEGGRKNPRGDFIAMDTTNIMFICGGAFSGLEHIVNGRKSRASIGFGANMRVNLRDADVQA 316
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BLAST of mRNA_E-fasciculatus_F_contig15964.4085.1 vs. uniprot
Match: A0A7S2V495_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V495_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.300e-39
Identity = 71/101 (70.30%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:    1 QISRKMENVSITRDVSGEGVQQALLKILEANPIRGAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPDMQ 303
            +ISRK ENVSITRDVSGEGVQQALLK+LE     G +VNVPK+GGRKNPR +FIQ+DT+ ILFICGGAF+GLE +IN RIAK+ IGF AN+ A+L N ++Q
Sbjct:  141 KISRKSENVSITRDVSGEGVQQALLKLLE-----GTVVNVPKEGGRKNPRGEFIQIDTSQILFICGGAFSGLERVINRRIAKAGIGFEANMKAELNNQEVQ 236
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BLAST of mRNA_E-fasciculatus_F_contig15964.4085.1 vs. uniprot
Match: A0A7R9U1K6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1K6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.350e-39
Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:    1 QISRKMENVSITRDVSGEGVQQALLKILEANPIRGAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPDMQ 303
            +I RK ENVSITRDVSGEGVQQALLKILE     G  VNVPKDGGRKNPR +FI++DTTNILFICGGAFAGLE +I+NR++  S+GFGA L ++L    +Q
Sbjct:   18 KIGRKGENVSITRDVSGEGVQQALLKILE-----GTSVNVPKDGGRKNPRGEFIKIDTTNILFICGGAFAGLEGIIDNRMSDFSMGFGATLQSNLQEASVQ 113
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BLAST of mRNA_E-fasciculatus_F_contig15964.4085.1 vs. uniprot
Match: A0A7S1BPD2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPD2_9STRA)

HSP 1 Score: 141 bits (356), Expect = 3.270e-37
Identity = 70/100 (70.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 QISRKMENVSITRDVSGEGVQQALLKILEANPIRGAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPDM 300
            +ISRK ENVSITRDVSGEGVQQALLK+LE     G +VNVPK+GGRKNPR DFI +DTTNILF+CGGAFAGLEH+IN R+ K SIGF + L  D+T+  +
Sbjct:  347 KISRKGENVSITRDVSGEGVQQALLKMLE-----GTVVNVPKEGGRKNPRGDFIAIDTTNILFVCGGAFAGLEHIINRRLDKPSIGFTSKLRRDMTDQSV 441
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BLAST of mRNA_E-fasciculatus_F_contig15964.4085.1 vs. uniprot
Match: A0A7S2PGH1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PGH1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.480e-35
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    1 QISRKMENVSITRDVSGEGVQQALLKILEANPIRGAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPDMQ--VYDG 315
            +ISR+ ENVSITRDVSGEGVQQALLKILE N     +VNVPK+GGRKNPR DFI +DTTNILFICGGAF+GL+ +IN  +  +S GFGA +  +L++ ++Q   +DG
Sbjct:  284 KISRRSENVSITRDVSGEGVQQALLKILEGN-----VVNVPKEGGRKNPRGDFIAIDTTNILFICGGAFSGLKKIINQYMDAASKGFGAKMKKELSDQNVQGKYFDG 385
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BLAST of mRNA_E-fasciculatus_F_contig15964.4085.1 vs. uniprot
Match: A0A6G0WMI3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMI3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.880e-35
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 QISRKMENVSITRDVSGEGVQQALLKILEANPIRGAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTN 291
            +ISRK ENVSITRDVSGEGVQQALLK+LE     G +VNVP+ GGRKNPR +FI +DT+NILFICGGAFAGLEH+I+ R A +SIGFGA +P    N
Sbjct:  349 KISRKSENVSITRDVSGEGVQQALLKMLE-----GTVVNVPEKGGRKNPRGEFIAIDTSNILFICGGAFAGLEHIISRRTANASIGFGAQMPNTKLN 440
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BLAST of mRNA_E-fasciculatus_F_contig15964.4085.1 vs. uniprot
Match: A0A7S2R9X5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R9X5_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.620e-35
Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    1 QISRKMENVSITRDVSGEGVQQALLKILEANPIRGAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPDMQ 303
            +I +   NVSI+RDVSGEGVQ ALLKI+E N     ++NVPK+ GRKNPR DF+Q+DTTNILFICGGAFAGLE +IN R+  +SIGFGA +  D  +  +Q
Sbjct:   19 KIRKSGGNVSISRDVSGEGVQHALLKIVEGN-----VINVPKEPGRKNPRGDFLQIDTTNILFICGGAFAGLEKIINKRMDSASIGFGAQMKKDTDDYQVQ 114
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BLAST of mRNA_E-fasciculatus_F_contig15964.4085.1 vs. uniprot
Match: A0A485K841_9STRA (Aste57867_1255 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K841_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.090e-35
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 QISRKMENVSITRDVSGEGVQQALLKILEANPIRGAIVNVPKDGGRKNPRSDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLP 276
            +ISRK ENVSITRDVSGEGVQQALLK+LE     G +VNVP+ GGRKNPR +FI +DT+NILFICGGAFAGLEH+I+ R A +SIGFGA +P
Sbjct:  294 KISRKSENVSITRDVSGEGVQQALLKMLE-----GCVVNVPEKGGRKNPRGEFIAIDTSNILFICGGAFAGLEHIISRRTASASIGFGAQMP 380
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15964.4085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTI4_ECTSI6.520e-5393.07AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2DR46_9STRA2.600e-4474.26Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835Z4A9_9STRA1.040e-3968.63P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2V495_9STRA1.300e-3970.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U1K6_9STRA1.350e-3969.31Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1BPD2_9STRA3.270e-3770.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2PGH1_9STRA1.480e-3563.55Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6G0WMI3_9STRA1.880e-3570.10Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2R9X5_9STRA3.620e-3561.39Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A485K841_9STRA5.090e-3572.83Aste57867_1255 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15964contigE-fasciculatus_F_contig15964:75..805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue5.2e-42
Seed eggNOG ortholog2880.D8LTI4
Preferred nameMCX1
KEGG koko:K03544,ko:K19852
KEGG Pathwayko04112,map04112
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006457,GO:0006508,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010604,GO:0015031,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030150,GO:0030163,GO:0030554,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042026,GO:0042623,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0055085,GO:0060255,GO:0065002,GO:0065007,GO:0070011,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1904285,GO:1904287,GO:1990542
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG1219@1,KOG0745@2759
EC2.7.11.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03110,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15964.4085.1prot_E-fasciculatus_F_contig15964.4085.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15964 75..790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.6298425-CDS-E-fasciculatus_F_contig15964:74..2931622928064.6298425-CDS-E-fasciculatus_F_contig15964:74..293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15964 75..293 -
1695995808.4076796-CDS-E-fasciculatus_F_contig15964:74..2931695995808.4076796-CDS-E-fasciculatus_F_contig15964:74..293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15964 75..293 -
1622928064.64349-CDS-E-fasciculatus_F_contig15964:703..7901622928064.64349-CDS-E-fasciculatus_F_contig15964:703..790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15964 704..790 -
1695995808.4198472-CDS-E-fasciculatus_F_contig15964:703..7901695995808.4198472-CDS-E-fasciculatus_F_contig15964:703..790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15964 704..790 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.6562018-UTR-E-fasciculatus_F_contig15964:790..8051622928064.6562018-UTR-E-fasciculatus_F_contig15964:790..805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15964 791..805 -
1695995808.4312975-UTR-E-fasciculatus_F_contig15964:790..8051695995808.4312975-UTR-E-fasciculatus_F_contig15964:790..805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15964 791..805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15964.4085.1

>prot_E-fasciculatus_F_contig15964.4085.1 ID=prot_E-fasciculatus_F_contig15964.4085.1|Name=mRNA_E-fasciculatus_F_contig15964.4085.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
MENVSITRDVSGEGVQQALLKILEANPIRGAIVNVPKDGGRKNPRSDFIQ
VDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPDMQVYDG
E*
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mRNA from alignment at E-fasciculatus_F_contig15964:75..805-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15964.4085.1 ID=mRNA_E-fasciculatus_F_contig15964.4085.1|Name=mRNA_E-fasciculatus_F_contig15964.4085.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=731bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15964:75..805- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATTTCAAGGAAGATGGAGAATGTGAGCATCACCCGCGACGTCAGCGG
GGAGGGCGTGCAGCAGGCTCTGCTCAAGATCCTAGAGGCAAATCCCATTC
GTGTCTTTTTTTGTTTTATTTTTCTGTTGTGTGTAGTGTTTTGCGGCCCC
TTGCTCTTGTGTTTTTACTCTGGTTGCGTCTTGTCGTTGTAGGAACGACG
GGTTGCGGGCATCGTTTCCCCTCGCTCAACTTCTTACCGATCCACGTTGG
GCATATGCCCCGTCCTTCCACGTGTGTTTGAGCGACGTCGCGCCAACTGC
TGTATTTTTAGCCTACATCACTAACACCACCTGGACATCACAAAATCCCC
GGTGTGTGCATCCCCTGCAGCACGCCAAACCATGTCTCAACCCTTCCGCC
GTGGCTTCTTTTTTTTTCTGGAACGACCCACCAGCTTGAGCATGCCCTGC
AGCACGCCAACGATGTCTCAACCCTTGCCCGTGAATGTTCGTTTTCCAAA
ACGATCCACCAGGGGGCCATCGTCAACGTTCCGAAGGACGGGGGCCGCAA
GAACCCTCGATCAGACTTCATTCAAGTGGACACGACCAACATACTCTTCA
TTTGCGGGGGTGCCTTCGCCGGCCTGGAGCACCTCATCAACAACCGAATC
GCCAAGTCTAGCATAGGCTTCGGGGCTAACCTTCCCGCCGACCTCACCAA
CCCGGATATGCAGGTATACGACGGAGAGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15964:75..805-

>mRNA_E-fasciculatus_F_contig15964.4085.1 ID=mRNA_E-fasciculatus_F_contig15964.4085.1|Name=mRNA_E-fasciculatus_F_contig15964.4085.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15964:75..805- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGAATGTGAGCATCACCCGCGACGTCAGCGGGGAGGGCGTGCAGCA
GGCTCTGCTCAAGATCCTAGAGGCAAATCCCATTCGTATGGAGAATGTGA
GCATCACCCGCGACGTCAGCGGGGAGGGCGTGCAGCAGGCTCTGCTCAAG
ATCCTAGAGGCAAATCCCATTCGTGGGGCCATCGTCAACGTTCCGAAGGA
CGGGGGCCGCAAGAACCCTCGATCAGACTTCATTCAAGTGGACACGACCA
ACATACTCTTCATTTGCGGGGGTGCCTTCGCCGGCCTGGAGCACCTCATC
AACAACCGAATCGCCAAGTCTAGCATAGGCTTCGGGGCTAACCTTCCCGC
CGACCTCACCAACCCGGATATGCAGGTATACGACGGAGAGTAGGGGGCCA
TCGTCAACGTTCCGAAGGACGGGGGCCGCAAGAACCCTCGATCAGACTTC
ATTCAAGTGGACACGACCAACATACTCTTCATTTGCGGGGGTGCCTTCGC
CGGCCTGGAGCACCTCATCAACAACCGAATCGCCAAGTCTAGCATAGGCT
TCGGGGCTAACCTTCCCGCCGACCTCACCAACCCGGATATGCAGGTATAC
GACGGAGAGTAG
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