mRNA_E-fasciculatus_F_contig15962.4084.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15962.4084.1
Unique NamemRNA_E-fasciculatus_F_contig15962.4084.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15962.4084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15962contigE-fasciculatus_F_contig15962:610..1737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_000550.1
Exons3
Model size1086
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15962.4084.1prot_E-fasciculatus_F_contig15962.4084.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15962 897..1367 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.5462782-UTR-E-fasciculatus_F_contig15962:609..8961622928064.5462782-UTR-E-fasciculatus_F_contig15962:609..896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15962 610..896 -
1695995808.35758-UTR-E-fasciculatus_F_contig15962:609..8961695995808.35758-UTR-E-fasciculatus_F_contig15962:609..896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15962 610..896 -
1622928064.5738304-UTR-E-fasciculatus_F_contig15962:1367..15201622928064.5738304-UTR-E-fasciculatus_F_contig15962:1367..1520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15962 1368..1520 -
1695995808.3749516-UTR-E-fasciculatus_F_contig15962:1367..15201695995808.3749516-UTR-E-fasciculatus_F_contig15962:1367..1520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15962 1368..1520 -
1622928064.5864282-UTR-E-fasciculatus_F_contig15962:1551..16591622928064.5864282-UTR-E-fasciculatus_F_contig15962:1551..1659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15962 1552..1659 -
1695995808.386727-UTR-E-fasciculatus_F_contig15962:1551..16591695995808.386727-UTR-E-fasciculatus_F_contig15962:1551..1659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15962 1552..1659 -
1622928064.5979245-UTR-E-fasciculatus_F_contig15962:1670..17371622928064.5979245-UTR-E-fasciculatus_F_contig15962:1670..1737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15962 1671..1737 -
1695995808.3973837-UTR-E-fasciculatus_F_contig15962:1670..17371695995808.3973837-UTR-E-fasciculatus_F_contig15962:1670..1737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15962 1671..1737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.561006-CDS-E-fasciculatus_F_contig15962:896..13671622928064.561006-CDS-E-fasciculatus_F_contig15962:896..1367Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15962 897..1367 -
1695995808.366502-CDS-E-fasciculatus_F_contig15962:896..13671695995808.366502-CDS-E-fasciculatus_F_contig15962:896..1367Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15962 897..1367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15962.4084.1

>prot_E-fasciculatus_F_contig15962.4084.1 ID=prot_E-fasciculatus_F_contig15962.4084.1|Name=mRNA_E-fasciculatus_F_contig15962.4084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=157bp
MLNTLSGIKIAPFAARQCDVQIGSDKVKGVGTGVLPDDKFAALKCGLEGM
LHLGATAAGKARAEAFLAPFCDISKRLRTYVARFRVGFMGEFGKMVADNV
ENAIDRDLMKVGAAASEASDLLRARFSHSPPKGDLDQLDIPSITPASFDH
KRQATD*
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mRNA from alignment at E-fasciculatus_F_contig15962:610..1737-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15962.4084.1 ID=mRNA_E-fasciculatus_F_contig15962.4084.1|Name=mRNA_E-fasciculatus_F_contig15962.4084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1128bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15962:610..1737- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCCCTCACCAGCCAGCAGAATGTCGCGGCGGACGGTCCACCTGAGGTC
GGCGAAGGCGGAGGGCAGCAACAGGGAGGAGATGTGTGGGCAATACTTCA
ACAGCAACAGCAGCAGCTCGACGTACAACAGCAGCAGCTTGGGGCATTGA
TTCCCATGGTACTGGCGATCACTCAGAACCTTCTCAGCCCCCTCTGCAAC
AGGCCTCTACCGCTCAGCGTGAGGCAGAGAAACGCGAGTCAAGGGAGTGG
GAAAACAAAGACGGTTTTAGGAGTTGGTTTGCTTCGGCGTTGGTAGGGCC
GCGTGCGAGTGCATCGCGTCTGCAGGAGCAAGTCGGAGATGAGCTGGTCG
TGTCGGACGAGGCTTTCAAGATGCTCAACACCTTGTCTGGCATCAAGATC
GCGCCGTTCGCTGCACGCCAGTGCGACGTTCAGATCGGAAGCGACAAGGT
GAAAGGTGTCGGGACAGGTGTTCTCCCTGACGACAAGTTCGCCGCGCTGA
AGTGCGGCCTCGAGGGGATGTTACATCTCGGGGCGACCGCTGCCGGCAAA
GCTCGCGCCGAGGCCTTTCTGGCGCCTTTTTGCGACATTTCCAAGCGCCT
GCGCACGTATGTCGCTAGGTTTCGCGTCGGCTTTATGGGTGAGTTCGGGA
AGATGGTGGCGGACAACGTGGAAAACGCCATTGATCGAGACTTGATGAAG
GTGGGGGCGGCTGCTAGCGAGGCTTCGGACCTGTTGAGGGCACGCTTTTC
ACACTCGCCTCCAAAGGGTGACCTTGACCAGCTCGACATTCCGAGCATCA
CGCCGGCGTCGTTTGACCACAAGCGACAGGCCACGGATTAACTCACCGGG
GCCTATCGGCACGTGCTTTACGTTCGGTGGCGGTGGCCCCGGGTTCTAGG
CATACAGGGGCAGGATGGGCGGCAGCCGAAAAGCAAAAGATGACGCCGTC
TGCCCCGTAAGCAGAAGGAGGGGGCCGATTCCACCTTTCAGCGAGTACAG
GACCTTCGCAAAGGAAGGTTGGGGTAAGTCAGGACGGGGCCCCGTTCAAG
ACGTGCGTACACTGGTACACTTCTGGCACATGCTACCGGGGCAACGCTTG
CAGGTTCTCCCACAACGTCACGAAAGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15962:610..1737-

>mRNA_E-fasciculatus_F_contig15962.4084.1 ID=mRNA_E-fasciculatus_F_contig15962.4084.1|Name=mRNA_E-fasciculatus_F_contig15962.4084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=942bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15962:610..1737- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCAACACCTTGTCTGGCATCAAGATCGCGCCGTTCGCTGCACGCCA
GTGCGACGTTCAGATCGGAAGCGACAAGGTGAAAGGTGTCGGGACAGGTG
TTCTCCCTGACGACAAGTTCGCCGCGCTGAAGTGCGGCCTCGAGGGGATG
TTACATCTCGGGGCGACCGCTGCCGGCAAAGCTCGCGCCGAGGCCTTTCT
GGCGCCTTTTTGCGACATTTCCAAGCGCCTGCGCACGTATGTCGCTAGGT
TTCGCGTCGGCTTTATGGGTGAGTTCGGGAAGATGGTGGCGGACAACGTG
GAAAACGCCATTGATCGAGACTTGATGAAGGTGGGGGCGGCTGCTAGCGA
GGCTTCGGACCTGTTGAGGGCACGCTTTTCACACTCGCCTCCAAAGGGTG
ACCTTGACCAGCTCGACATTCCGAGCATCACGCCGGCGTCGTTTGACCAC
AAGCGACAGGCCACGGATTAAATGCTCAACACCTTGTCTGGCATCAAGAT
CGCGCCGTTCGCTGCACGCCAGTGCGACGTTCAGATCGGAAGCGACAAGG
TGAAAGGTGTCGGGACAGGTGTTCTCCCTGACGACAAGTTCGCCGCGCTG
AAGTGCGGCCTCGAGGGGATGTTACATCTCGGGGCGACCGCTGCCGGCAA
AGCTCGCGCCGAGGCCTTTCTGGCGCCTTTTTGCGACATTTCCAAGCGCC
TGCGCACGTATGTCGCTAGGTTTCGCGTCGGCTTTATGGGTGAGTTCGGG
AAGATGGTGGCGGACAACGTGGAAAACGCCATTGATCGAGACTTGATGAA
GGTGGGGGCGGCTGCTAGCGAGGCTTCGGACCTGTTGAGGGCACGCTTTT
CACACTCGCCTCCAAAGGGTGACCTTGACCAGCTCGACATTCCGAGCATC
ACGCCGGCGTCGTTTGACCACAAGCGACAGGCCACGGATTAA
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