mRNA_E-fasciculatus_F_contig15958.4080.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15958.4080.1
Unique NamemRNA_E-fasciculatus_F_contig15958.4080.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15958.4080.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.750e-10
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   40 DLVYRVVDRAVHIAVEGPQETSVKDWNVWPPWSMKERRQAFLAKEAAEDLFRRRNPI 210
            ++V RVVDRAVH+AV+G +    +   VWPPWS +E R+ FL K AAEDL RRR+ +
Sbjct: 3063 EVVSRVVDRAVHVAVDGIEMVDAQGGLVWPPWSTEECRRRFLEKGAAEDLARRRDVL 3119
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15958.4080.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 6.100e-10
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   40 DLVYRVVDRAVHIAVEGPQETSVKDWNVWPPWSMKERRQAFLAKEAAEDLFRRRNPI 210
            +++ RVVDRAVH+AV+G +    +   VWPPWS +E R+ FL K AAEDL RRR+ +
Sbjct: 2335 EVLSRVVDRAVHVAVDGIEMVDAQGGLVWPPWSTEECRRRFLDKGAAEDLARRRDVL 2391
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15958.4080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNI2_9PHAE1.750e-1054.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI6.100e-1052.63Global transcription factor group n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15958contigE-fasciculatus_F_contig15958:2..308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_002890.1
Exons2
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.2571354-CDS-E-fasciculatus_F_contig15958:1..401622928064.2571354-CDS-E-fasciculatus_F_contig15958:1..40Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15958 2..40 +
1695995808.1897368-CDS-E-fasciculatus_F_contig15958:1..401695995808.1897368-CDS-E-fasciculatus_F_contig15958:1..40Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15958 2..40 +
1622928064.268772-CDS-E-fasciculatus_F_contig15958:134..3081622928064.268772-CDS-E-fasciculatus_F_contig15958:134..308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15958 135..308 +
1695995808.2081594-CDS-E-fasciculatus_F_contig15958:134..3081695995808.2081594-CDS-E-fasciculatus_F_contig15958:134..308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15958 135..308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15958.4080.1prot_E-fasciculatus_F_contig15958.4080.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15958 2..308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15958.4080.1

>prot_E-fasciculatus_F_contig15958.4080.1 ID=prot_E-fasciculatus_F_contig15958.4080.1|Name=mRNA_E-fasciculatus_F_contig15958.4080.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=71bp
GGGGGGGGGGGEDDLVYRVVDRAVHIAVEGPQETSVKDWNVWPPWSMKER
RQAFLAKEAAEDLFRRRNPI*
back to top

mRNA from alignment at E-fasciculatus_F_contig15958:2..308+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15958.4080.1 ID=mRNA_E-fasciculatus_F_contig15958.4080.1|Name=mRNA_E-fasciculatus_F_contig15958.4080.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=307bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15958:2..308+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGAAGATGTGGAGGGGGT
TCAAACTACCCCCTTTACCAATGACTGACGCACAGTACAACCGCACCCTC
AACGAGATGGTCTACATGGCGCGCGAGACGGAGGATCTGGTCTATAGGGT
GGTGGACCGGGCGGTCCACATCGCGGTGGAAGGACCACAAGAGACTTCGG
TAAAGGACTGGAATGTTTGGCCCCCCTGGTCAATGAAGGAACGAAGGCAA
GCTTTTCTGGCGAAGGAGGCCGCCGAAGACTTGTTCAGGCGCAGGAACCC
TATATAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15958:2..308+

>mRNA_E-fasciculatus_F_contig15958.4080.1 ID=mRNA_E-fasciculatus_F_contig15958.4080.1|Name=mRNA_E-fasciculatus_F_contig15958.4080.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=426bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15958:2..308+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGAAGATGGAGGAGGAGG
AGGAGGAGGAGGAGGGGGAGGAGAAGATGATCTGGTCTATAGGGTGGTGG
ACCGGGCGGTCCACATCGCGGTGGAAGGACCACAAGAGACTTCGGTAAAG
GACTGGAATGTTTGGCCCCCCTGGTCAATGAAGGAACGAAGGCAAGCTTT
TCTGGCGAAGGAGGCCGCCGAAGACTTGTTCAGGCGCAGGAACCCTATAT
AGGATCTGGTCTATAGGGTGGTGGACCGGGCGGTCCACATCGCGGTGGAA
GGACCACAAGAGACTTCGGTAAAGGACTGGAATGTTTGGCCCCCCTGGTC
AATGAAGGAACGAAGGCAAGCTTTTCTGGCGAAGGAGGCCGCCGAAGACT
TGTTCAGGCGCAGGAACCCTATATAG
back to top