mRNA_E-fasciculatus_F_contig1595.4075.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig1595.4075.1
Unique Name	mRNA_E-fasciculatus_F_contig1595.4075.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot
Match: D7G2Q9_ECTSI (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q9_ECTSI)

HSP 1 Score: 477 bits (1228), Expect = 2.190e-165
Identity = 243/256 (94.92%), Postives = 249/256 (97.27%), Query Frame = 2

Query:  200 MAGDLDETKGVTVDLADYKGGAVTVRVPLIEITEAQARGGHPALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEVEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSRTDKAVDEAVKKFLLGSCDVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRNEAEVILMEK 967
            MAGDLDETKGVTVDLA+YKGGAVTVRVPLIEITEAQ      ALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFE+EGLRGKQALVQAVVKNIARKEVKEPETRSDDE+RAALRVKGEQTVK+RTDKAVDEAVKKFLL SC+VNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLR+EAEVILMEK
Sbjct:    1 MAGDLDETKGVTVDLAEYKGGAVTVRVPLIEITEAQVEA---ALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEVRAALRVKGEQTVKNRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRDEAEVILMEK 253

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BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot
Match: A0A7S0VQZ5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VQZ5_9CRYP)

HSP 1 Score: 172 bits (437), Expect = 6.870e-46
Identity = 112/276 (40.58%), Postives = 154/276 (55.80%), Query Frame = 2

Query:  137 HLAAGRSRLSTAAASGRRTEMMAGDLDETKGVTVDLADYKGGAVTVRVPLIEITEAQARGGHPALQKSKKPYKLIPVRFVE-EGGTKMGHTVIMNWD--AKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEVEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSRTDKAVDEAVKKFLLGSCDVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEP-RAVVEFLRNEAEV 952
            H A GRS L  +         M G     K   V L  Y G +VT+  P  E++EA        L+++ K Y+L   RF + EGG +MGHTV++N+   +   G  + G K   +ELE KEG  EPW+TFA+ +AVGMGQ E K F  TFP D+ V  L+GKQ   +  VK I +K  K+P+TR ++  RA    + E  ++    + VD+A++  L+ +C  +  K   AVSWAKFGE+STLD +W  IKE I   EGI+   AV EFLR+   V
Sbjct:   55 HAAMGRSALGAS---------MQGGSGGDKNAEVTLGQYTGLSVTL--PRAEVSEAAVA---KILKENAKDYRLESARFTDGEGGARMGHTVLINFVGYSPETGAELKGTKANMYELELKEGQKEPWSTFASNIAVGMGQDEMKSFVVTFPGDYAVPALQGKQVRFETYVKKIMKKVAKDPDTRQEEVQRADAVAQLEAAIERNNLEKVDQALRLELMKTCAADTTKATEAVSWAKFGERSTLDLQWQIIKEAIGREEGIKDIGAVEEFLRDSNTV 316

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BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot
Match: A0A4D9CVA6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVA6_9STRA)

HSP 1 Score: 165 bits (418), Expect = 8.410e-44
Identity = 110/270 (40.74%), Postives = 150/270 (55.56%), Query Frame = 2

Query:  200 MAGDLDET--KGVTVDLADYKGGAVTVRVPLIEITEAQARGGHPALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKV------------DGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEVEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSRTDKAV-DEAVKKF---LLGSCDVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRNEAEVI 955
            M G++  T  KG  V L  YK GA++   P   +++A+          +KK +KL PVRFVEEGGT+MGHTV+ +W A               G  +P A  +NF LE KE   EP A+FA  +A GMGQMETKVF    PE   +E  RG  A +  +V++I  KE    + RS +E +AA+R +    ++++TD A   EA+  F   LL +     +K+  +VSWAKFGE S  DFKW+ I+E IA AEGI+   V  FL  E  V+
Sbjct:    1 MTGEMASTSAKGA-VTLGPYKNGALSFTYPKPTVSDAEVEA--QVKTAAKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYVSGGDPAKHSLRPGAVLPRADIKNFVLELKEDQSEPLASFARAVASGMGQMETKVFEVAMPESATIESWRGVTAKIMLLVRSINIKENLAADGRSIEEKQAAVRAE----LQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVV 263

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BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot
Match: A0A388KP71_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KP71_CHABU)

HSP 1 Score: 137 bits (344), Expect = 9.320e-32
Identity = 83/247 (33.60%), Postives = 130/247 (52.63%), Query Frame = 2

Query:  230 VTVDLADYKGGAVTVRVPLIEITEAQARGGHPALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKV-----DGRPVPGAKKENFELEFKEGHPEPWATFATKMA-VGMGQMETKVFPATFPEDFEVEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSRTDKAVDEAVKKFLLGSCDVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRNEAEV 952
            V V L  YKGG + V+    E+T+ +        +K +K ++   + F   G  K+GHTV +N++ K       G+ + G K + ++LE KE    PW  F  ++   GMGQ E+K F   FP DF+   LR  +A     VK I  K+    +TR + E R  ++ +     + +++  +D  ++  LL S + + DK+ + VSWAKFGE S  DFKWN + E++A  E I    V+ FLR EA++
Sbjct:  181 VKVVLGPYKGGVIKVKATKHEVTDEEVERAFK--EKREKTHEFERINFTGSGA-KLGHTVKINFEGKYAEGPKSGQLIQGTKADMYDLELKERPDYPWKRFVEEITGTGMGQEESKTFMVVFPPDFKAPHLRNVKARFTVTVKAIGVKKELPKDTRPEHEQREEIKDELVAAEERKSNAQIDPEIRSALLESSEADVDKIASNVSWAKFGENSLKDFKWNLLMEEVARVENIAFEDVMPFLRREADI 424

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BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot
Match: A0A1Y1I108_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I108_KLENI)

HSP 1 Score: 132 bits (332), Expect = 9.960e-31
Identity = 85/247 (34.41%), Postives = 126/247 (51.01%), Query Frame = 2

Query:  230 VTVDLADYKGGAVTVRVPLIEITEAQARGGHPALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRP-----VPGAKKENFELEFKEGHPEPWATFATKMAV-GMGQMETKVFPATFPEDFEVEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSRTDKAVDEAVKKFLLGSCDVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRNEAEV 952
            V + L  YK GA+ V     E++  +      A  K  K Y    + F   G  K+GH V ++++ K    P     + G K + FELE +    +PW TF  ++   GMGQ E+K F  TFP D++   LR   A     V  I  K++ E + R +  IRA +      T + +T+  +D+ V++ LL + + + DKV  +VSWAKFGE+S  DFKWN + E++A  E IE      FLR +A V
Sbjct:  102 VKIALGPYKDGAIKVSAKKFEVSNDEIEKALKA--KLGKTYDFERINFTGSGA-KIGHMVKVSFEGKYSDGPNAGQLIRGTKADFFELELQPREDDPWKTFVEQIVKNGMGQEESKSFTLTFPADYKAVPLRNVAARFTVTVHEIGIKKMLEKDPRPEAAIRADIEADLRATAERKTNDLIDQEVRRVLLETSEADVDKVAASVSWAKFGEKSLQDFKWNLLLEEVARNEKIEFEEAKAFLRRQATV 345

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BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot
Match: A0A7S1MV31_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MV31_HEMAN)

HSP 1 Score: 127 bits (318), Expect = 1.330e-30
Identity = 75/171 (43.86%), Postives = 99/171 (57.89%), Query Frame = 2

Query:  446 VPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEVEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRA-ALRVKGEQTVKSRTDKAVDEAVKKFLLGSCDVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVE-FLRNEAEV 952
            + G K   +ELE K  H EPW+TF   +AVGMGQ E K F  TFP+D+ V  L GKQ   +  VK I  +  KE + R + E RA A+        +S  DK VD+A+++ L+ +C  +  K   AVSWAKFGE+STLD +W  IKE I   EGI+    +E FLR +  V
Sbjct:    2 MKGTKANMYELELKGDHKEPWSTFTENIAVGMGQDEMKSFVVTFPDDYAVPALVGKQVRFETYVKKIMNRVAKEADARPEAEQRAEAIAALEASMERSNLDK-VDQAIRQELMKTCTADTTKATEAVSWAKFGEKSTLDLQWQIIKEAIGRKEGIKDIDAIENFLRQKNTV 171

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BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot
Match: A0A7R9Y821_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y821_9VIRI)

HSP 1 Score: 129 bits (324), Expect = 1.620e-30
Identity = 86/253 (33.99%), Postives = 130/253 (51.38%), Query Frame = 2

Query:  230 VTVDLADYKGGAVTVRVPLIEITEAQARGGHPALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVD------GRPVPGAKKENFELEFKEGHPEPWATFATKMA-VGMGQMETKVFPATFPEDFEVEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALR----VKGEQTVKSRTDKAVDEAVKKFLLGSCDVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVE-FLRNEAEV 952
            V V L +YKGGA+ VR       EA         ++  K ++L+ V F   G   MGHTV +   A         G+PVPG   ++  ++ K  +P P   F   +   GMGQME+K FP  FP+D++ E LRG   L   ++K IA K      T +D   RA LR     + ++  +  + K  D A++  LL  C+V+  K + +V+WAKFGE+S  D+ ++ I E+I   EG+  +  ++ FLR EA +
Sbjct:    7 VDVKLCEYKGGALCVRADKSVADEAAVDA--ELEEEMAKEFELVRVNFTGSGAA-MGHTVKLEMSATFGPGHQHAGQPVPGMTVDDLSVDLKTSNPFPLNHFVQAIVEAGMGQMESKTFPVAFPDDYQSERLRGVTCLFTIMIKEIAEKRPLPARTEAD---RATLREEIAARHDEQARRASAKRADLAIRNALLDGCEVDTQKTVESVAWAKFGEESIRDYAYSMILEEIGGREGLATQDDIKRFLREEASI 253

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BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot
Match: A0A4D9DGH6_9STRA (ABC transporter domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGH6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.690e-12
Identity = 51/128 (39.84%), Postives = 68/128 (53.12%), Query Frame = 2

Query:  200 MAGDLDET--KGVTVDLADYKGGAVTVRVPLIEITEAQARGGHPALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKV------------DGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGM 541
            M G++  T  KG  V L  YK GA++   P   +++A+          +KK +KL PVRFVEEGGT+MGHTV+ +W A               G  +P A  +NF LE KE   EP A+FA  +A GM
Sbjct:   61 MTGEMASTSAKGA-VTLGPYKNGALSFTYPKPTVSDAEVEA--QVKTAAKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYVSGGDPAKHSLRPGAVLPRADIKNFVLELKEDQSEPLASFARAVASGM 185

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BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot
Match: D5WUL5_KYRT2 (Trigger factor n=6 Tax=Kyrpidia TaxID=1129704 RepID=D5WUL5_KYRT2)

HSP 1 Score: 70.1 bits (170), Expect = 3.500e-9
Identity = 66/199 (33.17%), Postives = 98/199 (49.25%), Query Frame = 2

Query:  236 VDLADYKGGAVTVRVPLIEITEAQARGGHPALQKSKKPYKLIPVRFVEEGGTKMGHTVIM-NWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFAT---KMAVGMGQMETKVFPATFPEDFEVEGLRGKQALVQAVVKNIARKEVKE---------PETRSDDEIRAALRVKGEQTVKS--RT-------DKAVDEAV 766
            V+L  YKG  VTV      +TE         L+  ++ +  I V  V EGG      ++M +++  VDG P+ G + E+++LE   G      TF     +  +GM Q E +    TFP+D+ VEGLRGK+AL +  + +I RK + E          E  + +E+RA L+ K EQ  +   RT       DK V+EAV
Sbjct:  118 VELGTYKG--VTVEDKEFPVTEEDV---DKELENLRRQHAQIEV--VGEGGRVQNEDLVMIDFEGFVDGEPLEGGQGEDYQLEIGSG------TFVRGFEEQLIGMTQGEDREIRVTFPDDYHVEGLRGKEALFKVHLHDIKRKRLPELDDEFAKDISEFETLEELRADLKNKLEQRAEQDHRTYLENQVVDKVVEEAV 303

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BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot
Match: A0A088T2G1_9BACT (Trigger factor n=1 Tax=Candidatus Izimaplasma sp. HR1 TaxID=1541959 RepID=A0A088T2G1_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 4.310e-7
Identity = 73/276 (26.45%), Postives = 124/276 (44.93%), Query Frame = 2

Query:  236 VDLADYKGGAVTVRVPLIEITEAQARGGHPALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEVEGLRGKQALVQA-----------VVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKS-----RTDKAVDEAVKKF---------------LLGSCDVNADKV-LNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRNEAEVILMEK 967
            V L +YKG  +++     E+ E Q       LQK  +    + ++  EEG  + G T I ++D  VDG P  G K EN+EL    G   P   F  +M +GM   E K    +FPE+++ E L+GK A+ +            V+ +   K++++ +  + +E++A    K E++V++     R D AV EA K                 L+ +    A +  L   ++ +F   +  DF+ N +K+    A  I    VVE +  + E+   E+
Sbjct:  117 VTLGEYKG--LSMPKQSTEVKEEQIE---TELQKLLEQNAELVLK--EEGTLENGDTAIFDFDGYVDGEPFEGGKSENYELAIGSGQFIPG--FEEQM-IGMALGEEKDLNVSFPEEYQAENLKGKDAIFKVKLHEMKVRELPVMSDEFVKDLEKEDINTVEELKADTVKKLEESVEAQNKSARVDFAVSEATKNASYELPEEMIEEEKNRLVDNVKQQAKQYNLELDTYLQFSGVTKEDFEANLLKD---AARSISYNLVVEAIGKQEEITATEE 379

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig1595.4075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G2Q9_ECTSI	2.190e-165	94.92	FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ...	[more]
A0A7S0VQZ5_9CRYP	6.870e-46	40.58	Hypothetical protein n=1 Tax=Hemiselmis tepida Tax...	[more]
A0A4D9CVA6_9STRA	8.410e-44	40.74	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
A0A388KP71_CHABU	9.320e-32	33.60	Uncharacterized protein n=1 Tax=Chara braunii TaxI...	[more]
A0A1Y1I108_KLENI	9.960e-31	34.41	Uncharacterized protein n=1 Tax=Klebsormidium nite...	[more]
A0A7S1MV31_HEMAN	1.330e-30	43.86	Hypothetical protein n=1 Tax=Hemiselmis andersenii...	[more]
A0A7R9Y821_9VIRI	1.620e-30	33.99	Hypothetical protein n=1 Tax=Prasinoderma colonial...	[more]
A0A4D9DGH6_9STRA	2.690e-12	39.84	ABC transporter domain-containing protein n=1 Tax=...	[more]
D5WUL5_KYRT2	3.500e-9	33.17	Trigger factor n=6 Tax=Kyrpidia TaxID=1129704 RepI...	[more]
A0A088T2G1_9BACT	4.310e-7	26.45	Trigger factor n=1 Tax=Candidatus Izimaplasma sp. ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig1595	contig	E-fasciculatus_F_contig1595:2697..8549 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	74.3
Seed ortholog evalue	1.1e-10
Seed eggNOG ortholog	1356854.N007_04035
Preferred name	tig
KEGG ko	ko:K03545
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
EggNOG OGs	1TQQ8@1239,277WA@186823,4H9Q8@91061,COG0544@1,COG0544@2
COG Functional cat.	D
Best tax level	Alicyclobacillaceae
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	Secreted hypothetical protein
Ec32 ortholog	Ec-11_003150.1
Exons	9
Model size	1570
Cds size	957
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928063.6905735-UTR-E-fasciculatus_F_contig1595:2696..3296	1622928063.6905735-UTR-E-fasciculatus_F_contig1595:2696..3296	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1595 2697..3296 -
1695995807.812672-UTR-E-fasciculatus_F_contig1595:2696..3296	1695995807.812672-UTR-E-fasciculatus_F_contig1595:2696..3296	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1595 2697..3296 -
1622928063.8319383-UTR-E-fasciculatus_F_contig1595:8536..8549	1622928063.8319383-UTR-E-fasciculatus_F_contig1595:8536..8549	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1595 8537..8549 -
1695995807.9206657-UTR-E-fasciculatus_F_contig1595:8536..8549	1695995807.9206657-UTR-E-fasciculatus_F_contig1595:8536..8549	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1595 8537..8549 -

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig1595.4075.1	prot_E-fasciculatus_F_contig1595.4075.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig1595 3297..8536 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig1595:2697..8549-
coding sequence from alignment at E-fasciculatus_F_contig1595:2697..8549-

protein sequence of mRNA_E-fasciculatus_F_contig1595.4075.1

>prot_E-fasciculatus_F_contig1595.4075.1 ID=prot_E-fasciculatus_F_contig1595.4075.1|Name=mRNA_E-fasciculatus_F_contig1595.4075.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=319bp
MMSSAFSCVSLVVVAIACVVLPGDGFVARSPAPLMRQQASRHLAAGRSRL
STAAASGRRTEMMAGDLDETKGVTVDLADYKGGAVTVRVPLIEITEAQAR
GGHPALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKK
ENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEVEGLRGK
QALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSRTDKAVDEA
VKKFLLGSCDVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEP
RAVVEFLRNEAEVILMEK*

mRNA from alignment at E-fasciculatus_F_contig1595:2697..8549-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig1595.4075.1 ID=mRNA_E-fasciculatus_F_contig1595.4075.1|Name=mRNA_E-fasciculatus_F_contig1595.4075.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5853bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1595:2697..8549- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGAAGCTCACGAGATGATGTCTTCAGCCTTCTCGTGCGTTTCGCTGGTCG
TAGTAGCGATAGCATGCGTCGTTTTGCCGGGCGATGGCTTTGTTGCGAGA
TCGCCAGCACCGCTCATGAGGCAACAAGCCTCCCGGCACCTGGCAGCCGG
GCGAAGTAGATTATCAACAGCCGCCGCATCGGGCCGAAGAACGGAGATGA
TGGCTGGCGATCTCGATGTGAGCCTTCTTCTACCTCTGCATGAGATAGAG
AGAATATTGGCGGCAGCTCCGTGATATCGTGTGATATCGTGCTATCCATC
ATCTTGCAGGTTTTGTTTTGGCTGCGGTTGGGGGCTGCCTGGGTGCTGTT
GCCACCTAAGCCGCTGCCGGTGGACGAGCGCAGCCCCTAGCCGGCTATCT
AGCTAAGCACGAATGGGACTTCCACCAAACACTGGTGTTGTGCGCATCTC
GCTGTTGTGCGCATCTCGTTAAACCATGGCTACGTTGTGTCCATCGCCAC
GTCCTCAAGCACAGCGATGGATGGTGCATGCTGTCTGCTCCTGCTGTACT
GCTGCTGTGCGCTTGCTAATTACATACCACCAAAGATGGTGTACTACTGT
AGTACGAAAATTGGCTTAATTGTTGAGGGCCGGCTGTTGTCGTTAATCTC
GCTTCCGGTAACCACTGCTCAACACTGCTGTATGCACGATCTCTCTACTG
CCATTGCCAGGAGACGAAAGGAGTCACCGTAGACCTAGCGGACTACAAGG
GTGGGGCGGTTACCGTACGGGTGCCGCTCATCGAGATCACCGAAGCGCAG
GCAAGAGGGGGACACCGTGCACGATGGTGTTACATGTTTCCCTGTAGCCC
ACACTATTACTTGTCGTTAGAAGCAGGCTAAAGAGACTATTGGTGCTGCT
GCATGTGCTATGCACCGCAGTTTTTAGAGTATTGGTATCCGTGAATCGAT
GGGGTGTGTGTGGATTCGTTTAAGACAAGTCTTAAGATATCACACCCCCT
GGACCGATTTTCAAAGCTCGATTACCCCAGGATGAAGAGGATGTCGAAAA
TAAAGTAGACGTTTTCGGAAAGCTCTCTCTCTCTCTCGACGAGACGAGAC
GAGACGAGACGGTTCTAACGCTACCATTTTGGGCACCGTCACTGCTTTTC
CTGCCGAGATATCGAGCTTCGAAAATCGATCTAGGGGGTGTGATATCTTA
TGCAACCTACGGTGGCTGCACACGTGCAAGGCATATGATCGACCCGTTTC
CTCATACATGCCACCCATGTAGCTCGCGTCCTCCGTATTCTGTATGCGTT
TGCCTTCGACGGGATACGGTGGGGGTTTACATGTCATCCATAGTTTCATC
TCGGTATAGACGACGGACTGCAGTGATTGTCACGTGGAGAACTACTGTTT
CTCGCATGCTACTTACACGGACGGTATGTGACGGGTGGTGTGTTCGCCCT
TCTCACCACGCAGGTGGAAGCGGCCTTGCAGAAGTCGAAAAAGCCTTACA
AGCTTATCCCGGTCCGATTCGTCGAGGAGGGGGGTACGAAGATGGGCCAC
ACGGTCATCATGAACTGGGACGCCAAGGTGAGAGGAGGTGGTCATGTTGA
AGTAATAAATTCTTGCATGTTAAATGTATGGGGGTCCACAGAAGGCGGTA
CTCACACCAGCACGGCTGAGATGCCATGTGTTTTCTTATGAGTGCGGAAG
CTTGAGTACAGCGCTTACAAGCTGAGAGCAGTCAGTTGCAACACCCTGCC
CATTACCACGTGCACGCATCGCAACCCCGCTTAACACAACCGTGAGCACA
TGGTGGGAATCCTGAACGCGAAGTCGAGAAGAGCTTGTTGTGTCCACCAA
CGGTTTGTAGCCATCCATCCAATCCACACAAGCCTGTCCCTCCCCCAACC
CCGCTCCGCTCCTCCTCCTGCTTTGCATTTTAGCATTTTTGCCCGGCCTT
CGGACTTGCCACCCTCCTTCTTCCTGTTCGCAGTATCTCCTTGTGTTCCC
AACAACCTTTCATATGTTTCGCGGCGGCTTGTTGCATGTTGTTTTTCGCG
GTGGCGTCGACGCAAACCACCCGGTTGCCTAAGGTCGACGGCCGGCCCGT
CCCTGGCGCTAAGAAGGAGAACTTCGAGCTAGAATTCAAGGTGAGCGGTG
ATCACACCGACGTTATGATAACTGCAGTGCTACCAAAGTGTGCGAGTTTT
CGTCTAATCCGTCCTGTCCTGTACATGTACGGCTAGGCGCGGCGTCTCCG
CACAGACCTGATGCTTCAGGGAGAAAGGATGGCTGCTATCGGGACACAAC
AGCTTGAAAATTTCATGTGGCCACGTGTGGGTGTACCGTGCACCAAAGAA
TCACAAAACACATGACAAACACGTCGTACCGCCGGGCCTTCGGTGTCAGG
CAGTCGTCACCATGCTTCTAGCGGTGGCACTATTGTGATGTATCAAGGAC
ACAGCATTCTAAGTGCACACAGATATACCAACACAACAACACGCGAACAA
CGACATGTTTTTGGCCTGGTTGTGGTTGTGTCGCGCTCGGATCGTATCGT
AATGTTGTCTCCGCGGCGTGACGGAAAAAACAGGAGGGACACCCCGAGCC
GTGGGCGACGTTTGCGACGAAAATGGCCGTCGGGATGGGACAGATGGAGA
CCAAGGTCTTCCCGGCAACCTTCCCGGAAGACTTTGAGGTACGGACAAAG
GGGACAGGATTGATAGCCATGGCCGTGTTTTTGAGACCGAAGAAATTCTA
ACCGAAAGTCATCCTAGAAACAAACCGAGTGCTGGTGGAAGTAAACGCTG
ATCCGTTATGGAGTCAGAGAACTGTGTCGTAAATAATGGCAGATATTACA
CCCCAGGGCACATCATGGTGCTTTTCGAAGTGCGACAAGAGCCACTGCTT
CCTTCGGCTTGCCTTAGCCACGCCTTTTGCAGTATGCACGACCTTTAGCT
CTCGATGTACTGCATCAATACGAACGCGTGCTTGCTCGCTGTCCAAGAGA
GAGTGTGTCGTCGTTCGTTTTTGGCTCTCCATGATGTTTCACTTTCGCCA
CAGTTGTCGTGCGTCGTATATTTACCGTTGTAAATATGTAGCTGTAGATA
GTTGAGGCTCAAGTTGCTTTTCGTCTTTCACATCCCAGATGTTTTTGGCG
TGTTTCCATCCGGTGTGATGTCCGTCGTGGTCCATACTATACAGAACCCA
AGCAAACGTGTAACACGAGCAAATGCTTTCGCGCGCGACAAACCCTAATC
CTTGCTCTCTGTTTCGTTCGCGTGGAGAGAAGGTCGAGGGCTTGAGGGGC
AAGCAGGCGCTCGTCCAGGCGGTGGTGAAGAACATCGCCAGGAAGGAGGT
CAAGGTAACAATACACCTTTTCTTGTTTTTCCTGTGGGAAGTTATGGAAT
ACAGACAATTTTGTTCGATGTGCATTGACTGCACAACAGGGAACCGGAGG
TGCTCACAAAGGAGAGCTTGCAGAGGGCGTCGCCCCCGTTCTACCATCTG
TCGTATGCATACGGTCTCCCGTAGATCTTTGCAGATGCTCCAACATGCAG
GACCCTTCATTGAAAAACTCGCTTCCAAAGTAACATGCAGAGGTCAAATG
TTTCCCCATGATTAAGACACTCTTGCACCCCCAACCACAACTACCGAAAA
CGAAGGAGCCCGAGACCAGGAGCGACGACGAGATCAGGGCCGCGCTGCGG
GTGAAGGGGGAGCAGACCGTCAAGGTGAGAGCCAGCGAGCAAACATGGAT
AGAACGATTCAGCCTGGCTTCCTGGTTTTCAACCAGTAGCGTGAATGGTT
ATGCGCACCGACTCTATGGCTGCTCTTGGGGCGGACGTCTTTCACAAGGG
TGGGTGGGAAAACCCGATGCTAGACCGATGGTCAGGTGCAAACAGTTCGG
GCACCGGGCGGGAGAAACACGTCAGCATGTCATTTTGGAGCGGGCAGTGG
GGTATATGGCAGTACCAGCGAGATCCAAACCACAGATCTATTCTCAGGCG
GATTCGCGTGGACCCGAATGGCTGAAAAGATATTTAGAGACTGTTAAGTC
TATTGCGGCTCTGTCGGTATGTGGCGGTAGGATCTTTTTGCACGAAGCCA
TCTGGGTCCCCTTGAACGGCTGTCGCTGTCGCAATGAGATGGCCTCGATA
TTTTGTCGCATCGAATGAGAGTTGGAGCATCAGGAATTGGTCCCGCCGTG
CCTTCCTGGAGTCAGTCACACCGAGGGCCGCTGCGGTTGTATGACAGACA
CCATGACATGACATGACATGACATGACATGACAAATCCATAGAATCAACT
TCGTGGCGTCCAGAGGAAATGATGAACCTAGCGGCACGCTCGCGCGTCAA
GACCCTCGTGCCACTGGTGTCTCGTAGAAGAGCGGGGCATGACATGACAT
TGCTTGGTTTAGACTCTTGTTCATTGCTGAGATGTATGAGACACCCAGGC
AGGCCATCGCCAACGCCCCCCCGCCACGCACTGGAAATATCTAATAGGTG
CTATATTCTCCCGACCCTGTTTGTGTGACGTGAAATTGCGTGACAATAGT
CCTTGCTCTCTGGAAACATGTTCCCTTTGGTTTCTGAAACTGTCAATAAC
AGAGCCGCACCGACAAGGCCGTCGACGAGGCTGTGAAGAAGTTCCTCCTG
GGTTCTTGCGATGTCAACGCCGACAAGGTATCTACCGTCCTAAATGTTGC
ATTGCCTATCCTTTGGTTTGGATTGGAAATTGGAAAATTGGCGTGCTTGG
TTTCTTAGCAACGAGCACGCGTGTGAGCAGTTTCGCAAAGTAGTTGATGT
ACGTCTGTGGTTGTCTGCTTTTTCTGCGTTTTGTATGAATCTCAGACCCC
ATTTCGTCCTCCCGGAGACGCGCGGTTGGCGTTTTTGCTTGTAGGCACCG
CGTGATCGCCAAGGCTCGTCCGAGAATCCGACTGCTGTACACTTGAGAAC
GTTTAGGCGGAACCTTCAGGCATACCGAAGTATGAAGTAGTAGCATGTGC
ACGTGTTTATCACATGTGTTGTAACATGACAGCGCTCTTTAACACGCCAG
CCCGCCATCACCCGAATATTCCGCGGATCCCCCTCTCACAGGTCTTGAAC
GCCGTGTCGTGGGCGAAGTTCGGCGAGCAATCGACGCTAGACTTCAAGTG
GAACTGCATCAAGGAGAAGATCGCCGTTGCCGAGGGCATCGAGCCTCGCG
CGGTGGTGGAGTTCCTGCGAAACGAAGCCGAAGTGATTCTCATGGAGAAG
TGAACCAAGCACTTCTTTTTCAAGAAGTACACAGGATCTTGTACTGGGCG
TACCACCTCGCTTAGCTATACTCAGAATCGGAGCACCCCGTGTACACCCC
AAAGGCGTCCTGTTTTGCCCGCGAGGATGCTTGCTTCTGGTGTACTCCCA
AACGGGTCGCTACTTGAGATGACATCGTTTTTACACCCTCCCGGCGAACA
CCTCGTTTTCTGGTGTTGCTCTGGATTTCGTTAGTAATAGTGCGTAGACC
CTGCATCTATCTACGGTTTAGAGAGTCATGACACGTGGAGATCCCGTATA
TACGGGTTGGAAAGTCATGACATGACACGCGTCATTTGAGAGTCGTTGAG
AGGTCTCAGTCAGTCACCTCCTACGGGGAGGACAATTTTGAGTAAGTGGA
CCGAGCCCTAGCTGATCAGCTGGGATTTTGATCTATCTGTCTGTGTGTTG
TGTTCTCGGTACCTCGTAAAGAAAGTAAAAGGTAGAGAATTAACCGTTTG
TAACGCGCTTGCGTCGCATCGTTTCTTCGTTGCAGTCCCGAATTGAAGTT
TCGCTAAAAGGAGAGGGTCATCCTCTGCACTCAATACTGGGGCGACAACG
GAG

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1595:2697..8549-

>mRNA_E-fasciculatus_F_contig1595.4075.1 ID=mRNA_E-fasciculatus_F_contig1595.4075.1|Name=mRNA_E-fasciculatus_F_contig1595.4075.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1914bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1595:2697..8549- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGTCTTCAGCCTTCTCGTGCGTTTCGCTGGTCGTAGTAGCGATAGC
ATGCGTCGTTTTGCCGGGCGATGGCTTTGTTGCGAGATCGCCAGCACCGC
TCATGAGGCAACAAGCCTCCCGGCACCTGGCAGCCGGGCGAAGTAGATTA
TCAACAGCCGCCGCATCGGGCCGAAGAACGGAGATGATGGCTGGCGATCT
CGATATGATGTCTTCAGCCTTCTCGTGCGTTTCGCTGGTCGTAGTAGCGA
TAGCATGCGTCGTTTTGCCGGGCGATGGCTTTGTTGCGAGATCGCCAGCA
CCGCTCATGAGGCAACAAGCCTCCCGGCACCTGGCAGCCGGGCGAAGTAG
ATTATCAACAGCCGCCGCATCGGGCCGAAGAACGGAGATGATGGCTGGCG
ATCTCGATGAGACGAAAGGAGTCACCGTAGACCTAGCGGACTACAAGGGT
GGGGCGGTTACCGTACGGGTGCCGCTCATCGAGATCACCGAAGCGCAGGC
AAGAGGGGGACACCGAGACGAAAGGAGTCACCGTAGACCTAGCGGACTAC
AAGGGTGGGGCGGTTACCGTACGGGTGCCGCTCATCGAGATCACCGAAGC
GCAGGCAAGAGGGGGACACCCGGCCTTGCAGAAGTCGAAAAAGCCTTACA
AGCTTATCCCGGTCCGATTCGTCGAGGAGGGGGGTACGAAGATGGGCCAC
ACGGTCATCATGAACTGGGACGCCAAGCGGCCTTGCAGAAGTCGAAAAAG
CCTTACAAGCTTATCCCGGTCCGATTCGTCGAGGAGGGGGGTACGAAGAT
GGGCCACACGGTCATCATGAACTGGGACGCCAAGGTCGACGGCCGGCCCG
TCCCTGGCGCTAAGAAGGAGAACTTCGAGCTAGAATTCAAGGTCGACGGC
CGGCCCGTCCCTGGCGCTAAGAAGGAGAACTTCGAGCTAGAATTCAAGGA
GGGACACCCCGAGCCGTGGGCGACGTTTGCGACGAAAATGGCCGTCGGGA
TGGGACAGATGGAGACCAAGGTCTTCCCGGCAACCTTCCCGGAAGACTTT
GAGGAGGGACACCCCGAGCCGTGGGCGACGTTTGCGACGAAAATGGCCGT
CGGGATGGGACAGATGGAGACCAAGGTCTTCCCGGCAACCTTCCCGGAAG
ACTTTGAGGTCGAGGGCTTGAGGGGCAAGCAGGCGCTCGTCCAGGCGGTG
GTGAAGAACATCGCCAGGAAGGAGGTCAAGGTCGAGGGCTTGAGGGGCAA
GCAGGCGCTCGTCCAGGCGGTGGTGAAGAACATCGCCAGGAAGGAGGTCA
AGGAGCCCGAGACCAGGAGCGACGACGAGATCAGGGCCGCGCTGCGGGTG
AAGGGGGAGCAGACCGTCAAGGAGCCCGAGACCAGGAGCGACGACGAGAT
CAGGGCCGCGCTGCGGGTGAAGGGGGAGCAGACCGTCAAGAGCCGCACCG
ACAAGGCCGTCGACGAGGCTGTGAAGAAGTTCCTCCTGGGTTCTTGCGAT
GTCAACGCCGACAAGAGCCGCACCGACAAGGCCGTCGACGAGGCTGTGAA
GAAGTTCCTCCTGGGTTCTTGCGATGTCAACGCCGACAAGGTCTTGAACG
CCGTGTCGTGGGCGAAGTTCGGCGAGCAATCGACGCTAGACTTCAAGTGG
AACTGCATCAAGGAGAAGATCGCCGTTGCCGAGGGCATCGAGCCTCGCGC
GGTGGTGGAGTTCCTGCGAAACGAAGCCGAAGTGATTCTCATGGAGAAGT
GAGTCTTGAACGCCGTGTCGTGGGCGAAGTTCGGCGAGCAATCGACGCTA
GACTTCAAGTGGAACTGCATCAAGGAGAAGATCGCCGTTGCCGAGGGCAT
CGAGCCTCGCGCGGTGGTGGAGTTCCTGCGAAACGAAGCCGAAGTGATTC
TCATGGAGAAGTGA