mRNA_E-fasciculatus_F_contig15949.4074.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15949.4074.1
Unique NamemRNA_E-fasciculatus_F_contig15949.4074.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15949.4074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15949contigE-fasciculatus_F_contig15949:1286..1776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928063.637641-UTR-E-fasciculatus_F_contig15949:1285..14431622928063.637641-UTR-E-fasciculatus_F_contig15949:1285..1443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15949 1286..1443 +
1695995807.785664-UTR-E-fasciculatus_F_contig15949:1285..14431695995807.785664-UTR-E-fasciculatus_F_contig15949:1285..1443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15949 1286..1443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928063.6535797-CDS-E-fasciculatus_F_contig15949:1443..17761622928063.6535797-CDS-E-fasciculatus_F_contig15949:1443..1776Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15949 1444..1776 +
1695995807.8017926-CDS-E-fasciculatus_F_contig15949:1443..17761695995807.8017926-CDS-E-fasciculatus_F_contig15949:1443..1776Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15949 1444..1776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15949.4074.1prot_E-fasciculatus_F_contig15949.4074.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15949 1444..1776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15949.4074.1

>prot_E-fasciculatus_F_contig15949.4074.1 ID=prot_E-fasciculatus_F_contig15949.4074.1|Name=mRNA_E-fasciculatus_F_contig15949.4074.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=111bp
MRGVLGEGWRGCKRKRPVFVAASHDGLRKNADSGCYRAVDVAVVPTSSHA
GLPSIQGLISHEVLGIHVYLHRIEAGFFSPPSRIDSKHDENDLRERVTLI
CTHTHVSTDHP
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mRNA from alignment at E-fasciculatus_F_contig15949:1286..1776+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15949.4074.1 ID=mRNA_E-fasciculatus_F_contig15949.4074.1|Name=mRNA_E-fasciculatus_F_contig15949.4074.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=491bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15949:1286..1776+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCCATTATCATCCGCCGCCACAAGAGGAAAGCCCAAACACATGTCGTTG
TCAGCATGTTCTGGCCTTTTCAAGTGTTTGAGGTGTCTGGTAGGGTCGTA
TCGTATCACGGTGGTGCGTGGAACACAACTAGTTGTTCTCGGCGTTTCGT
CGCGGTAAATGAGGGGTGTGCTTGGGGAGGGGTGGAGGGGTTGCAAAAGA
AAGCGACCTGTTTTTGTTGCAGCAAGTCACGACGGACTTCGGAAAAACGC
GGATTCAGGCTGCTATCGGGCAGTTGACGTAGCAGTAGTACCAACTAGCA
GTCACGCGGGGTTACCTTCGATTCAGGGGTTGATTTCACATGAGGTGCTT
GGTATCCATGTGTACCTACACAGAATCGAGGCCGGTTTCTTCAGTCCCCC
CTCACGAATCGATTCAAAACACGACGAAAACGATCTTCGGGAGAGAGTCA
CACTCATATGTACACATACACACGTCTCAACCGATCACCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15949:1286..1776+

>mRNA_E-fasciculatus_F_contig15949.4074.1 ID=mRNA_E-fasciculatus_F_contig15949.4074.1|Name=mRNA_E-fasciculatus_F_contig15949.4074.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15949:1286..1776+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGGGTGTGCTTGGGGAGGGGTGGAGGGGTTGCAAAAGAAAGCGACC
TGTTTTTGTTGCAGCAAGTCACGACGGACTTCGGAAAAACGCGGATTCAG
GCTGCTATCGGGCAGTTGACGTAGCAGTAGTACCAACTAGCAGTCACGCG
GGGTTACCTTCGATTCAGGGGTTGATTTCACATGAGGTGCTTGGTATCCA
TGTGTACCTACACAGAATCGAGGCCGGTTTCTTCAGTCCCCCCTCACGAA
TCGATTCAAAACACGACGAAAACGATCTTCGGGAGAGAGTCACACTCATA
TGTACACATACACACGTCTCAACCGATCACCCCATGAGGGGTGTGCTTGG
GGAGGGGTGGAGGGGTTGCAAAAGAAAGCGACCTGTTTTTGTTGCAGCAA
GTCACGACGGACTTCGGAAAAACGCGGATTCAGGCTGCTATCGGGCAGTT
GACGTAGCAGTAGTACCAACTAGCAGTCACGCGGGGTTACCTTCGATTCA
GGGGTTGATTTCACATGAGGTGCTTGGTATCCATGTGTACCTACACAGAA
TCGAGGCCGGTTTCTTCAGTCCCCCCTCACGAATCGATTCAAAACACGAC
GAAAACGATCTTCGGGAGAGAGTCACACTCATATGTACACATACACACGT
CTCAACCGATCACCCC
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