mRNA_E-fasciculatus_F_contig10509.407.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10509.407.1
Unique NamemRNA_E-fasciculatus_F_contig10509.407.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10509.407.1 vs. uniprot
Match: D8LLM3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.740e-9
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:   13 GKYEEAAPLYLRAIEIGETKLGTEHPKLATWLNNRAELLR 132
            G+  EA PLYLRAIE+GE KLG +HP LATWLNN+A LLR
Sbjct:    8 GEDTEADPLYLRAIEVGEKKLGPDHPDLATWLNNQAVLLR 47          
BLAST of mRNA_E-fasciculatus_F_contig10509.407.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.050e-8
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query:   10 QGKYEEAAPLYLRAIEIGETKLGTEHPKLATWLNNRA 120
            QGKYEEA PLYLRA+EIGE  LG +HP LA WLNN+A
Sbjct:    7 QGKYEEADPLYLRAVEIGEKTLGPDHPTLAVWLNNKA 43          
BLAST of mRNA_E-fasciculatus_F_contig10509.407.1 vs. uniprot
Match: A0A6H5L045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L045_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.760e-8
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   13 GKYEEAAPLYLRAIEIGETKLGTEHPKLATWLNNRAELLR 132
            GKY EA PLYLRAI+IG+  LG +HP LA WLNNRA LL+
Sbjct:   10 GKYAEADPLYLRAIDIGKKMLGPDHPDLAAWLNNRAGLLK 49          
BLAST of mRNA_E-fasciculatus_F_contig10509.407.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.810e-7
Identity = 31/43 (72.09%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    1 LATQGKYEEAAPLYLRAIEIGETKLGTEHPKLATWLNNRAELL 129
            L   GKY EA PLYLRAIEIGE  LG +HP LAT LNNRA LL
Sbjct:  609 LELMGKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLL 651          
BLAST of mRNA_E-fasciculatus_F_contig10509.407.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.390e-7
Identity = 29/41 (70.73%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   10 QGKYEEAAPLYLRAIEIGETKLGTEHPKLATWLNNRAELLR 132
            +G + EA P  LRAIEIGE  LG EHP LA WLNNRAELLR
Sbjct:  643 EGNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRAELLR 683          
BLAST of mRNA_E-fasciculatus_F_contig10509.407.1 vs. uniprot
Match: A0A6H5J7J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J8_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.680e-7
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1
Query:  535 AIPLLERALRIRTKKLGDNHPDTVSTRDRLELVREK 642
            A+PLLERAL IR KKLG+NHPDTVST++ L++VR K
Sbjct:    7 AVPLLERALSIRMKKLGENHPDTVSTQNSLDVVRRK 42          
BLAST of mRNA_E-fasciculatus_F_contig10509.407.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 54.7 bits (130), Expect = 1.120e-6
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    7 TQGKYEEAAPLYLRAIEIGETKLGTEHPKLATWLNNRAEL 126
            +QGKYEEA PLY RA++I ET LG +HP +AT LNN A L
Sbjct:    3 SQGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42          
BLAST of mRNA_E-fasciculatus_F_contig10509.407.1 vs. uniprot
Match: A0A7S3NLU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLU4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.420e-6
Identity = 26/36 (72.22%), Postives = 27/36 (75.00%), Query Frame = 1
Query:    1 LATQGKYEEAAPLYLRAIEIGETKLGTEHPKLATWL 108
            L +QGKY EA PLY RAIEIGE  LG  HP LATWL
Sbjct:    9 LESQGKYNEAKPLYERAIEIGEKTLGPNHPNLATWL 44          
BLAST of mRNA_E-fasciculatus_F_contig10509.407.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.930e-6
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   10 QGKYEEAAPLYLRAIEIGETKLGTEHPKLATWLNNRAELLR 132
            +GKY++A PLY+RAI IGE  LG EHP LA WLN  A LL+
Sbjct:   12 EGKYDDAEPLYVRAIAIGEKSLGPEHPDLAVWLNYWAGLLK 52          
BLAST of mRNA_E-fasciculatus_F_contig10509.407.1 vs. uniprot
Match: A0A6H5K2T5_9PHAE (PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.030e-5
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    1 LATQGKYEEAAPLYLRAIEIGETKLGTEHPKLATWLNNRAELL 129
            +  QGKY EA PL LRA++IG++ LG +HP LA WL NRA LL
Sbjct:  550 ITLQGKYAEADPLILRAMDIGKSPLGPDHPDLALWLGNRACLL 592          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10509.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LLM3_ECTSI4.740e-972.50Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5K0C4_9PHAE1.050e-875.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L045_9PHAE7.760e-870.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6W2_ECTSI1.810e-772.09NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JJK0_9PHAE2.390e-770.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7J8_9PHAE2.680e-772.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0013D295281.120e-665.00tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A7S3NLU4_9STRA1.420e-672.22Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A6H5K4D0_9PHAE4.930e-663.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T5_9PHAE1.030e-560.47PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10509contigE-fasciculatus_F_contig10509:76..2336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue3.9e-07
Seed eggNOG ortholog2880.D8LLM3
KEGG koko:K10407
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size645
Cds size645
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10509.407.1prot_E-fasciculatus_F_contig10509.407.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10509 76..2336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927548.930788-CDS-E-fasciculatus_F_contig10509:75..2041622927548.930788-CDS-E-fasciculatus_F_contig10509:75..204Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10509 76..204 -
1695995589.9996274-CDS-E-fasciculatus_F_contig10509:75..2041695995589.9996274-CDS-E-fasciculatus_F_contig10509:75..204Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10509 76..204 -
1622927548.9469206-CDS-E-fasciculatus_F_contig10509:557..6831622927548.9469206-CDS-E-fasciculatus_F_contig10509:557..683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10509 558..683 -
1695995590.0177867-CDS-E-fasciculatus_F_contig10509:557..6831695995590.0177867-CDS-E-fasciculatus_F_contig10509:557..683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10509 558..683 -
1622927548.964796-CDS-E-fasciculatus_F_contig10509:1328..14541622927548.964796-CDS-E-fasciculatus_F_contig10509:1328..1454Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10509 1329..1454 -
1695995590.02759-CDS-E-fasciculatus_F_contig10509:1328..14541695995590.02759-CDS-E-fasciculatus_F_contig10509:1328..1454Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10509 1329..1454 -
1622927548.9788194-CDS-E-fasciculatus_F_contig10509:1766..18921622927548.9788194-CDS-E-fasciculatus_F_contig10509:1766..1892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10509 1767..1892 -
1695995590.0438714-CDS-E-fasciculatus_F_contig10509:1766..18921695995590.0438714-CDS-E-fasciculatus_F_contig10509:1766..1892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10509 1767..1892 -
1622927548.9953635-CDS-E-fasciculatus_F_contig10509:2198..23361622927548.9953635-CDS-E-fasciculatus_F_contig10509:2198..2336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10509 2199..2336 -
1695995590.0555663-CDS-E-fasciculatus_F_contig10509:2198..23361695995590.0555663-CDS-E-fasciculatus_F_contig10509:2198..2336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10509 2199..2336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10509.407.1

>prot_E-fasciculatus_F_contig10509.407.1 ID=prot_E-fasciculatus_F_contig10509.407.1|Name=mRNA_E-fasciculatus_F_contig10509.407.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=215bp
LATQGKYEEAAPLYLRAIEIGETKLGTEHPKLATWLNNRAELLRVQGKYA
EADPLYLRSIEIGEKTLGPDHPDLATWLSNRAELLRVQGKYAEADPLYLR
AIEIGEKTLGPDHPDLATRLNNRAGLLRAQGKYAETEALYERSQAISQKG
LDAEHPHVATVLHNRAALLMASEKYTEQAIPLLERALRIRTKKLGDNHPD
TVSTRDRLELVREKV
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mRNA from alignment at E-fasciculatus_F_contig10509:76..2336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10509.407.1 ID=mRNA_E-fasciculatus_F_contig10509.407.1|Name=mRNA_E-fasciculatus_F_contig10509.407.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2261bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10509:76..2336- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCGCTACACAGGGCAAGTACGAAGAGGCGGCTCCTCTCTATCTTCGGGC TATTGAGATCGGGGAGACGAAGCTCGGCACCGAACACCCAAAGCTTGCCA CATGGCTCAACAACCGGGCGGAGTTGTTGAGGGTGCAGGTGAGAGACCAA GGGTTTGGTATTGAATTTCGTAGAGTTCAAACTCGTTTGTGAGGGATTTC GGTTGTTAGGAGAAAGCTGGCTGAACGTATCCACGTTGTATTGCAAAGGT TAAGCACGGCGAGGCCGAGCCACGTTGTGAACGATCACCGTCCGTACGAG AGAAGGGGCTGGATCCGGAGCGACCCCGATGTGGCCAGTCGCTCAACCCG GGGCTTGATTGTGGGGTCTTTGTTCCTCGGCAATATGCTGTACTAAACCT TGGTCTACACTACACCTCTTCTGTTCTTCCTCCTCCCCTTCCAGGGAAAG TATGCTGAGGCGGACCCTCTGTATCTTCGATCTATTGAAATCGGAGAGAA AACGTTGGGCCCTGATCACCCAGACCTGGCCACCTGGCTCAGCAACCGGG CGGAGTTGTTGAGGGTGCAGGTGAGAGACCAAGGGTTCTATCTAGAAATT TTGTAGAGTTCAATTTTCTGTGCGAAAAAAGTCGTATTTTGGTGCACCGC TGGCCGAACGAACCCACCTTGTATTGGACAGGGTAACCTCAACGAGGCTG ACCCACTCTATGCTCTATGAACGATCGCAGTCAATACGCGAGAAGTCGCT TGGTCCGGAGCGACTCCGATGTGGCCCAGTCGCTCAATAACCGGGGCGGT GTTGTTGAGGGTTTGTTCCTCGGCAACATGCTGCACTAAGCCTTGGTCTG CACCTCTTCCGTTCTTCCTCCTCCCCTTCCAGGGGAAGTATGCTGAGGCG GACCCTCTGTACCTTCGAGCTATTGAGATCGGAGAGAAAACGCTGGGCCC TGACCACCCGGACCTGGCAACCAGGCTCAACAACCGGGCGGGGTTGTTGA GAGCGCAGGTGAAAGCCGCACGGTTCTTCTGGTAGCGTGTAGAATTTAGT GCTATCCCGCAGTTCGAGATTGATGCAGCTGAAACATGGCCCCGCTACGC TGCAGCTGCGTTCCCGGCGAAGTATGTTGAGGCCGAGGCGCTTTACTAGC GGTCACAGGCCATTCGAGAGAAGTTGCTGGGCTCACAACATCGTGATGTG GCCCAGATTCTCAACAACCAGGCGCAGTTGTTGAGCATTTGTTCCTCCGT ATAAATGCTTCACCTTGCACTTGACTACCATCTCGCTTCTCCCTTCCCTT CCAGGGCAAGTAAGCTGAGGCCGAGACCCTGGTCGCCCCAAGTTTGGCCT CAACACTCAACAACTGGGCGGGGGTTTTGGAAGCACAGGTGAGAGACAAG CGATGCTTCTGGATGCTTGTAGAAAAATGTCCCTCCGCTGTTGTAGATCT CAAAGTGACTGGTACGCATCATGGCAATTGTGCTGAGACCCAGCCACTCT ATGAGCGACCATGGCCTATACGAGGGGCAGTGCTGAGCCTGGAGCACCCT GGTGTGGCCCAGGCGCTCAACAACCGGGCGGACGTGGTTGTAGACCCCAC TTTGACTGAACAATGACGACAACTCTGCCACATCGTCTACGATCGAATGC CAGGGCAAGTACGCTGAGACCGAGGCACTGTACGAACGGTCACAGGCGAT ATCTCAGAAGGGCTTGGATGCTGAACATCCGCATGTGGCCACGGTGCTCC ACAACCGGGCGGCGTTGTTGATGGCCTCGGTGAGAGTCGACAGAACTTTC TGGGGTTGTTTTGTGGCGTCCTCAGGACGTTTTGGGACAAGCAGGGTAGA TGCTTCGTTGTCTTACCGTGAAATGGCTGAAGTCAGAGGACTTGCTGAAC GCGAAGGTGAGACCAGTCGTCAATGGCTTGGACGAAAGTGTTATGATGCC ATTGTTCGTGTTGAATTTCCTCACGTGTCGATGTGTATCGCAGTGTGTCC GGACCGCTCTTTTCCCACCCCTGCTTATGTGTACCACGTGGAGAGCGAAT CGGTGTTGTTACCCCAGTCTTGGTATAATGCGGCCTGCGCAACGGATTTG GTTTCTCATCCCTGCATGTCAATCGCCCACAGGAGAAGTACACGGAGCAG GCAATCCCACTATTGGAGAGGGCCCTCAGAATCCGCACGAAGAAGCTTGG GGATAACCACCCGGACACGGTCAGCACTCGGGACCGCCTGGAACTTGTGC GAGAGAAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10509:76..2336-

>mRNA_E-fasciculatus_F_contig10509.407.1 ID=mRNA_E-fasciculatus_F_contig10509.407.1|Name=mRNA_E-fasciculatus_F_contig10509.407.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10509:76..2336- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCGCTACACAGGGCAAGTACGAAGAGGCGGCTCCTCTCTATCTTCGGGC
TATTGAGATCGGGGAGACGAAGCTCGGCACCGAACACCCAAAGCTTGCCA
CATGGCTCAACAACCGGGCGGAGTTGTTGAGGGTGCAGCTCGCTACACAG
GGCAAGTACGAAGAGGCGGCTCCTCTCTATCTTCGGGCTATTGAGATCGG
GGAGACGAAGCTCGGCACCGAACACCCAAAGCTTGCCACATGGCTCAACA
ACCGGGCGGAGTTGTTGAGGGTGCAGGGAAAGTATGCTGAGGCGGACCCT
CTGTATCTTCGATCTATTGAAATCGGAGAGAAAACGTTGGGCCCTGATCA
CCCAGACCTGGCCACCTGGCTCAGCAACCGGGCGGAGTTGTTGAGGGTGC
AGGGAAAGTATGCTGAGGCGGACCCTCTGTATCTTCGATCTATTGAAATC
GGAGAGAAAACGTTGGGCCCTGATCACCCAGACCTGGCCACCTGGCTCAG
CAACCGGGCGGAGTTGTTGAGGGTGCAGGGGAAGTATGCTGAGGCGGACC
CTCTGTACCTTCGAGCTATTGAGATCGGAGAGAAAACGCTGGGCCCTGAC
CACCCGGACCTGGCAACCAGGCTCAACAACCGGGCGGGGTTGTTGAGAGC
GCAGGGGAAGTATGCTGAGGCGGACCCTCTGTACCTTCGAGCTATTGAGA
TCGGAGAGAAAACGCTGGGCCCTGACCACCCGGACCTGGCAACCAGGCTC
AACAACCGGGCGGGGTTGTTGAGAGCGCAGGGCAAGTACGCTGAGACCGA
GGCACTGTACGAACGGTCACAGGCGATATCTCAGAAGGGCTTGGATGCTG
AACATCCGCATGTGGCCACGGTGCTCCACAACCGGGCGGCGTTGTTGATG
GCCTCGGGCAAGTACGCTGAGACCGAGGCACTGTACGAACGGTCACAGGC
GATATCTCAGAAGGGCTTGGATGCTGAACATCCGCATGTGGCCACGGTGC
TCCACAACCGGGCGGCGTTGTTGATGGCCTCGGAGAAGTACACGGAGCAG
GCAATCCCACTATTGGAGAGGGCCCTCAGAATCCGCACGAAGAAGCTTGG
GGATAACCACCCGGACACGGTCAGCACTCGGGACCGCCTGGAACTTGTGC
GAGAGAAGGTGGAGAAGTACACGGAGCAGGCAATCCCACTATTGGAGAGG
GCCCTCAGAATCCGCACGAAGAAGCTTGGGGATAACCACCCGGACACGGT
CAGCACTCGGGACCGCCTGGAACTTGTGCGAGAGAAGGTG
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