mRNA_E-fasciculatus_F_contig1594.4067.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1594.4067.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 446 bits (1148), Expect = 3.290e-153 Identity = 219/311 (70.42%), Postives = 251/311 (80.71%), Query Frame = 2
Query: 164 FVRTGGKTVQGQTPLHLATG*GFCEGMVALMDAGANVNSRMSNGSTSLYNASCLGNLSAVKILLHKKANPLLRVGTTHPLEVAAQQGHLRVVQELVHRFGVDGCSDEGGTCALETAAYRNRLNVATFLLDSGIVDCDGTALCAAIEGRNEACIKLMMSRMGGNANMVEHYYTNIDNACDNPLLCALDTGRGYAPRIAKFLLEHGADTKIKVRFEIQGLGEIVEEPLVAAKLTLRHEQTHVEVADGEGVDGVKGVVRLLQQEAAVHANSWVWPTDKDRGTKVVRKLPAFKIRPGPRPIVLLPAMKRCALWRR 1096
F+ + VQGQTPLHLATG GFC+GMVAL+DAGANV+SRMSNGST++Y A+C GNL AVKILL ++ANP+L VG THPL++A GHL VVQELV RFGVDGCSDEG ALETAAY N + TFLLD+G+ D DGTALC AIEGR+EAC+KL++ R GGNA+M E +YTN D+ACDN L+CA GRGYAPR+ +FLL+HGADTK KVRFEI+GLGEI PLVAAK+ LRHEQTH E AD EGVDG+K VVRLL+QE AVHANSW WP D DR TK+VRK PAFKI PGPRP VLL AM RC W R
Sbjct: 104 FLHPDQEVVQGQTPLHLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAACTGNLDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGVKDTDGTALCDAIEGRSEACLKLLVGRRGGNAHMAESHYTNTDSACDNALVCAFGAGRGYAPRMTRFLLDHGADTKKKVRFEIKGLGEIAGGPLVAAKIILRHEQTHFEDADEEGVDGLKEVVRLLRQEDAVHANSWAWPIDTDRATKIVRKTPAFKIHPGPRPCVLLAAMGRCVEWCR 414
BLAST of mRNA_E-fasciculatus_F_contig1594.4067.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 439 bits (1128), Expect = 4.530e-150 Identity = 218/309 (70.55%), Postives = 254/309 (82.20%), Query Frame = 2
Query: 164 FVRTGGKTVQGQTPLHLATG*GFCEGMVALMDAGANVNSRMSNGSTSLYNASCLGNLSAVKILLHKKANPLLRVGTTHPLEVAAQQGHLRVVQELVHRFGVDGCSDEGGTCALETAAYRNRLNVATFLLDSGIVDCDGTALCAAIEGRNEACIKLMMSRMGGNANMVEHYYTNIDNACDNPLLCALDTGRGYAPRIAKFLLEHGADTKIKVRFEIQGLGEIVEEPLVAAKLTLRHEQTHVEVADGEGVDGVKGVVRLLQQEAAVHANSWVWPTDKDRGTKVVRKLPAFKIRPGPRPIVLLPAMKRCALW 1090
VR + VQGQTPLHLA G GFCEGMVAL++AGANV+SRMS+GST++Y A+CLGNL AV+IL KKANPLLRVG THPL++A GHL VVQELV RFG+DGC+DEG ALETAAY N + TFLLD+G++D DGTALC AIEGRNEAC+KL++SR GG+ +MVE YTNIDNA +NPLLCA TGRG+APRI +FLL+HGADTK KVRF I+GLGE+++EPLVAAK+TLRHEQT+ + AD + VDG+KGVVRLLQQEAAVHANSW WPTD DR TK+VRK IRPG RP VLL AM RC W
Sbjct: 117 LVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGVIDTDGTALCDAIEGRNEACLKLLVSRRGGSEHMVERNYTNIDNARENPLLCAFGTGRGHAPRITRFLLDHGADTKNKVRFGIEGLGEMIDEPLVAAKITLRHEQTYFKDADVDRVDGLKGVVRLLQQEAAVHANSWAWPTDTDRATKIVRK----PIRPGSRPEVLLAAMGRCVEW 421
BLAST of mRNA_E-fasciculatus_F_contig1594.4067.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 221 bits (563), Expect = 1.030e-61 Identity = 131/296 (44.26%), Postives = 185/296 (62.50%), Query Frame = 2
Query: 236 EGMVALMDAGANVNSRMSNGSTSLYNASCLGNLSAVKILLHKKANPLLRV--GTTHPLEVAAQQGHLRVVQELVHRFGVDGCSDEGGTCALETAAYRNRLNVATFLLDSGIVDCDGTALCAAIEGRNEACIKLMMSRMGGNANMVEHYYTNIDNAC-----------DNPLLCALDTGRGYAPRIAKFLLEHGADTKIKVRFE-IQGLGEIVEEPLVAAKLTLRHEQTHVEVADGEGVD-GVKGVVRLLQQEAAVHANSWVWPTDKDRGTKVVRKLPAFKIRPGPRPIVLLPAMKR 1078
+GMV L+ AGANV+S +G+T LY ++ G L VK+L+ KANPL+ G + PL+ AA+ G+L VV+ELV RFG+DGCS +GG AL AA +N+ ++ TFL D+G+VD +G ALCAA+EGR E +KL++ R G NAN Y N+ + D PL+ A + G Y+PRI + LL+ GAD +VR+E I+G + + PL A+ L +T+ E + E V+ G+KGV+RLL+Q AVHA SW WP ++ T +VR LP K R +P V+L A+ R
Sbjct: 96 DGMVVLIHAGANVDSEQESGATPLYTSARQGRLEDVKVLVGTKANPLVPAYDGESLPLDAAAENGYLGVVRELVQRFGIDGCSRDGGAQALVEAASQNQTDIVTFLFDNGVVDAEGIALCAAVEGRREEFVKLLLRRQGCNANTSTRAYANMAHDSTLPMYSNQLFQDTPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETYGETS--EDVEFGLKGVIRLLKQVDAVHAISWCWPNALEKSTPIVRMLPGLKRR-ATKPRVVLAALSR 388
BLAST of mRNA_E-fasciculatus_F_contig1594.4067.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 203 bits (517), Expect = 2.360e-58 Identity = 128/310 (41.29%), Postives = 177/310 (57.10%), Query Frame = 2
Query: 194 GQTPLHLATG*GFCEGMVALMDAGANVNSRMSNGSTSLYNASCLGNLSAVKILLHKKANPLLRV--GTTHPLEVAAQQGHLRVVQELVHRFGVDGCSDEGGTCALETAAYRNRLNVATFLLDSGIVDCDGTALCAAIEGRNEACIKLMMSRMGGNANMVEHYYTNIDNAC-----------DNPLLCALDTGRGYAPRIAKFLLEHGADTKIKVRFE-IQGLGEIVEEPLVAAKLTLRHEQTHVEVADGEGVD-GVKGVVRLLQQEAAVHANSWVWPTDKDRGTKVVRKLPAFKIRPGPRPIVLLPAMKR 1078
G TPLH+A GF +GMV L+ AG VK + KANP+L G + PL+VAA+ G L VV+EL RFG+DGCS +GG AL AA +N++++ TFL D+G+VD +G ALCAA+EGR E CI+L++ G NAN + Y N+ + D PL+ A + G Y+PRI + LL GAD +VR+E I+G + + PL A+ TL +T+ E + E V+ G+KGV+RLL+Q AVHA SW WP+ ++ T +VR LP K R +P V L + R
Sbjct: 103 GCTPLHVAAAKGFHKGMVMLIHAG-------------------------VKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQGCNANAIARAYANMTHDTTLPMYSNQLFPDTPLVSAFELGGFYSPRITRLLLGAGADVASRVRYEGIEGDCVMHDTPLTIAESTLPLWETYGETS--EDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRR-ATKPRVALAPLSR 384
BLAST of mRNA_E-fasciculatus_F_contig1594.4067.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.620e-48 Identity = 111/268 (41.42%), Postives = 142/268 (52.99%), Query Frame = 2
Query: 353 LHKKANPLLRVGTTHPLEVAAQQGHLRVVQELVHRFGVDGCSDEGGTCALETAAYRNRLNVATFLLDSGIVDCDGTALCAAIEGRNEACIKLMMSRMGGNANMVEHYYTNIDNAC-----------DNPLLCALDTGRGYAPRIAKFLLEHGADTKIKVRFEIQGLGEIVEEPLVAAKLTL------RHEQTHVEVADGEGVDGVKGVVRLLQQEAAVHANSWVWPTDKDRG---------TKVVRKLPAFKIRPGPRPIVLLPAMKR 1078
L ANPLL + PL A GHL+VV ELVH +G D C+++GG AL TAA R +++ TFL D+G+VD +G ALCAAIEG +EAC+ L++ R GGN N+ Y N+ + + PL+ + G +APR A+ LLE GAD VRF +E + L L R V E V G+KGV+RLL+QE AVHA SW WP D R T + R LP K R +P VLL AM R
Sbjct: 148 LRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGNINVSTRAYVNMAHGTLPETYDDFVFQETPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEDFIGTPLELATSYFRRFSPMRVH---REMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAA-KPRVLLAAMSR 411
BLAST of mRNA_E-fasciculatus_F_contig1594.4067.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 172 bits (437), Expect = 3.820e-44 Identity = 110/263 (41.83%), Postives = 141/263 (53.61%), Query Frame = 2
Query: 365 ANPLLRVGTTHPLEVAAQQGHLRVVQELVHRFGVDGCSDEGGTCALETAAYRNRLNVATFLLDSGIVDCDGTALCAAIEGRNEACIKLMMSRMGGNANMVEHYYTNIDNAC-----------DNPLLCALDTGRGYAPRIAKFLLEHGADTKIKVRFEIQG-LGE----IVEEPLVAAKLTLRHEQTHVEVADGEGVDGVKGVVRLLQQEAAVHANSWVWPTDKDRG---------TKVVRKLPAFKIRPGPRPIVLLPAMKR 1078
ANPLL + PL +A GHL VV+ELVH +G D C+ +GG AL TAA R +++ FL ++G+VD +G ALCAAIEG +EAC+ L++ R GGNAN Y N+D+ + PL+ + G +APR A+ LLE GAD VRF GE + PL A +R T E V G+KGV+RLLQQE AVH+ SW WP D R T + R +P K R VLL AM R
Sbjct: 573 ANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGNANTGTRAYVNMDHGTLPETYEEFVFQETPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYVRRFSTMK--VHREMVRGLKGVIRLLQQEEAVHSVSWTWPIDTGRSAERVSRKKSTSIARMVPLLKRRAATLR-VLLAAMSR 832
BLAST of mRNA_E-fasciculatus_F_contig1594.4067.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 137 bits (346), Expect = 4.490e-33 Identity = 106/289 (36.68%), Postives = 143/289 (49.48%), Query Frame = 2
Query: 200 TPLHLATG*GFCEGMVALMDAGANVNSRMSNGSTSLYNASCLGNLSAVKILLHKKANPLLRVGTTH------PLEVAAQQGHLRVVQELVHRFGVDGCS-DEGGTCALETAAYRNRLNVATFLLDSGIVDCDGTALCAAIEGRNEACIKLMMSRMGGNANMVEHYYTNIDNACDNPLLCALDTGRGYAPRIAKFLLEHGADTKIKVRFEIQ-GLGEIVEEPLV---------AAKLTLRHEQTHVEVADGEGVDGVKGVVRLLQQEAAVHANSWVWPTDKDRGTKVVRK 1015
TPL A G + AL+ AG+N+N+R S+G+T LY A+ GN+ AV +LL KA+PLL + PL+VAAQ GH VV EL+ + G+DGC GG AL AA +RL++ L D+G+VD G AL A EA +K ++ + G + Y N N L LD + PR+ + L+E GADT V Q G + PL +AK EQ +EV + RLL +E AVHA SW+WP+D T K
Sbjct: 117 TPLDCAAETGCAASVTALLKAGSNINTRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVD-TGLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVG--LTSLLDGIQRCRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGRSAKPLTMEEQNKLEV-----------IRRLLLREEAVHAVSWLWPSDTPTITHATAK 391
BLAST of mRNA_E-fasciculatus_F_contig1594.4067.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 130 bits (326), Expect = 2.290e-30 Identity = 93/252 (36.90%), Postives = 132/252 (52.38%), Query Frame = 2
Query: 269 NVNSRMSNGSTSLYNASCLGNLSAVKILLHKKANPLLRV-----GTTH-PLEVAAQQGHLRVVQELVHRFGVDGCS-DEGGTCALETAAYRNRLNVATFLLDSGIVDCDGTALCAAIEGRNEACIKLMMSRMGGNANMVEHYYTNI-DNACDNPLLCALDTGRGYAPRIAKFLLEHGADTKIKVRFEIQGLGEIVEEPLVAAKLTLRHEQTHVEV-----ADGEGVDGVKGVVRLLQQEAAVHANSWVWPTD 985
N+NSR S+G+T LY A+ GN+ A ++LL KA+PLL G T PL+ AA+ GH VV EL+ + G+DGC GG AL+ AA LN+ L ++G+VD G AL A E +K ++ + M E Y N D PLL + + Y PR+ + L+E GADT V Q G+ V + LT+ + V+V A E + ++ + RLL + AVHA SW+WP+D
Sbjct: 140 NLNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVD-TGLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGI---QHYRPRVVRLLVEAGADTTSPVAVRNQLGGDDVS--ITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSD 385
BLAST of mRNA_E-fasciculatus_F_contig1594.4067.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 127 bits (318), Expect = 5.590e-29 Identity = 93/286 (32.52%), Postives = 126/286 (44.06%), Query Frame = 2
Query: 440 QELVHRFGVDGCSDEGGTCALETAAYRNRLNVATFLLDSGIVDCDGTALCAAI-----------------------------------------------EGRNEACIKLMMSRMGGNANMVEHYYTNIDNAC-----------DNPLLCALDTGRGYAPRIAKFLLEHGADTKIKVRFEIQGLGEIVEEPLVAAKLTL------RHEQTHVEVADGEGVDGVKGVVRLLQQEAAVHANSWVWPTDKDRG---------TKVVRKLPAFKIRPGPRPIVLLPAMKR 1078
+ELV+ +G+D C+ +GG AL TAA R +++ TFL D+G+VD +G ALCAAI EG +EAC+ L++ R GGNAN Y N+D+ + PL+ + G +AP A+ LLE GAD VRF +E + L L R V E V +KGV+RLL+QE AVH+ SW WP D R T + R +P K R +P VLL A+ R
Sbjct: 184 RELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGVVDTEGVALCAAIXWRCTMDIWKWSASLCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEGCSEACVYLLLRRQGGNANTGTRAYVNMDHGTLPETYDEFVFQETPLVSTFNLGSFHAPGFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSSMSVH---REMVPELKGVIRLLRQEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLKRRAA-KPRVLLAALSR 465
BLAST of mRNA_E-fasciculatus_F_contig1594.4067.1 vs. uniprot
Match: A0A6H5KEI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI1_9PHAE) HSP 1 Score: 108 bits (269), Expect = 5.370e-23 Identity = 82/244 (33.61%), Postives = 121/244 (49.59%), Query Frame = 2
Query: 299 TSLYNASCLGNLSAVKILLHKKANPLLRVGTTH------PLEVAAQQGHLRVVQELVHRFGVDGCSDEGGTC--ALETAAYRNRLNVATFLLDSGIVDCDGTALCAAIEGRNEACIKLMMSRMGGNANMVEHYYTN-IDNACDNPLLCAL------DTGRGYAPRIAKFLLEHGADTKIKVRFEIQGLGEIVEEPLVAAKLTLRHEQTHVEVADGEGVDGVKGVVRLLQQEAAVHANSWVWPTD 985
T LY A+ G+L AVK+LLH KANPLL + PLEVAAQ G VV+EL+ FG+ C G AL AA ++++ + ++ +G+VD G AL AA+ EA + ++ + E + T+ ++ ACD+ L AL + + PRI + L++ GADT V+ L +T V + E V+ + R+L Q AVHA SW+WP+D
Sbjct: 14 TPLYIAAMQGHLGAVKVLLHAKANPLLTRSSECSGRSFVPLEVAAQTGRSAVVRELLREFGIRCCGGPSGRLLDALRVAAVYGQVDIMSIIMGAGVVDPVGLALLAAVGSGKEAAVGFLLRQQQ------ERWQTSYVNTACDDDGLTALLWSFGGNNNKPCNPRITRRLVDAGADTTSTVQ------------------LRAERSRTRVNMTPLEYVN--EATRRVLLQAVAVHAVSWMWPSD 231 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1594.4067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1594.4067.1 >prot_E-fasciculatus_F_contig1594.4067.1 ID=prot_E-fasciculatus_F_contig1594.4067.1|Name=mRNA_E-fasciculatus_F_contig1594.4067.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=286bp MVALMDAGANVNSRMSNGSTSLYNASCLGNLSAVKILLHKKANPLLRVGTback to top mRNA from alignment at E-fasciculatus_F_contig1594:996..2094- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1594.4067.1 ID=mRNA_E-fasciculatus_F_contig1594.4067.1|Name=mRNA_E-fasciculatus_F_contig1594.4067.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1099bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1594:996..2094- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1594:996..2094- >mRNA_E-fasciculatus_F_contig1594.4067.1 ID=mRNA_E-fasciculatus_F_contig1594.4067.1|Name=mRNA_E-fasciculatus_F_contig1594.4067.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1716bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1594:996..2094- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |