mRNA_E-fasciculatus_F_contig1594.4070.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1594.4070.1 vs. uniprot
Match: A0A6H5JNJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ1_9PHAE) HSP 1 Score: 268 bits (684), Expect = 1.860e-85 Identity = 137/170 (80.59%), Postives = 150/170 (88.24%), Query Frame = 1
Query: 49 IEELKYDPDDARYPFGAQGKRLLWGASSSGPLRHGLEPGRTRRQTRETHGAEEAPGPGETPDPEEALLATVLETGGMEIVEEYICNSLVKERWEEEQTCRMEEMYRRELQKVLGQEEQAFRAEVDASGSSQPQPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 558
+EELKYDP D RYP G +GK LLWGA+++GPLRHGLE GRTR+QTRE GA E P PGET DPEEALLAT+LETGG VE+YICNSLVKE+W+EEQT R EEMYRRE+Q+VLG E+QAF AEVDASGSSQP PDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW
Sbjct: 105 LEELKYDPADDRYPRGIEGKELLWGAANAGPLRHGLESGRTRKQTREMQGAGEMPRPGETTDPEEALLATILETGGTGTVEDYICNSLVKEQWDEEQTRRTEEMYRREVQEVLGPEQQAFGAEVDASGSSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 274
BLAST of mRNA_E-fasciculatus_F_contig1594.4070.1 vs. uniprot
Match: A0A6H5JMC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC7_9PHAE) HSP 1 Score: 263 bits (672), Expect = 5.540e-85 Identity = 134/170 (78.82%), Postives = 149/170 (87.65%), Query Frame = 1
Query: 49 IEELKYDPDDARYPFGAQGKRLLWGASSSGPLRHGLEPGRTRRQTRETHGAEEAPGPGETPDPEEALLATVLETGGMEIVEEYICNSLVKERWEEEQTCRMEEMYRRELQKVLGQEEQAFRAEVDASGSSQPQPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 558
+EELKYDP D RYP G +GK+LLWGAS++GPLRHGLE GRTR+QTRE G E PG GET DP+EALLAT+LETGG IVE+YICNSLVKE+W+EEQT RMEEMYRRE+Q+VLG ++Q F AEVDASGSSQP PDPQLSMTSPI QKPSDVEAVPMTYKDVMCS YKVFW
Sbjct: 137 LEELKYDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGVGEMPGAGETSDPQEALLATILETGGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPKQQTFGAEVDASGSSQPLPDPQLSMTSPIRQKPSDVEAVPMTYKDVMCSTYKVFW 306
BLAST of mRNA_E-fasciculatus_F_contig1594.4070.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 270 bits (690), Expect = 6.660e-84 Identity = 137/170 (80.59%), Postives = 152/170 (89.41%), Query Frame = 1
Query: 49 IEELKYDPDDARYPFGAQGKRLLWGASSSGPLRHGLEPGRTRRQTRETHGAEEAPGPGETPDPEEALLATVLETGGMEIVEEYICNSLVKERWEEEQTCRMEEMYRRELQKVLGQEEQAFRAEVDASGSSQPQPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 558
+EELKYDP D RYP G +GK+LLWGAS++GPLRHGLE GRTR+QTRE GA E GPGETPDPEEALLAT+LETGG IVE+YICNSLVKE+W+EEQT MEEMYRRE+Q+VLG E+QAF AEVDASGSSQP PDPQLSMTSPIGQKPS+V+AVPMTY DVMCSKYKVFW
Sbjct: 59 LEELKYDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGEMSGPGETPDPEEALLATILETGGTGIVEDYICNSLVKEQWDEEQTRHMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLSMTSPIGQKPSNVKAVPMTYNDVMCSKYKVFW 228
BLAST of mRNA_E-fasciculatus_F_contig1594.4070.1 vs. uniprot
Match: A0A6H5L1D0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D0_9PHAE) HSP 1 Score: 256 bits (654), Expect = 2.100e-82 Identity = 131/166 (78.92%), Postives = 146/166 (87.95%), Query Frame = 1
Query: 49 IEELKYDPDDARYPFGAQGKRLLWGASSSGPLRHGLEPGRTRRQTRETHGAEEAPGPGETPDPEEALLATVLETGGMEIVEEYICNSLVKERWEEEQTCRMEEMYRRELQKVLGQEEQAFRAEVDASGSSQPQPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKY 546
+EELKYDP D RY G +GK+LLWGAS++GPLRHGLE GRTR+QT E GA E PGPG+TPDPEEALLAT+LE GG IVE+YICNSLVKE+W+EEQ RMEEMYRRE+Q+VLG E+QAF AEVDASGSSQP PDPQ SMTSP+GQKPSDVEAVPMTYKDVMCSKY
Sbjct: 103 LEELKYDPADDRYSRGLEGKKLLWGASNAGPLRHGLESGRTRKQTWEMQGAGEMPGPGQTPDPEEALLATILENGGTGIVEDYICNSLVKEQWDEEQIRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQRSMTSPVGQKPSDVEAVPMTYKDVMCSKY 268
BLAST of mRNA_E-fasciculatus_F_contig1594.4070.1 vs. uniprot
Match: A0A6H5K1G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G4_9PHAE) HSP 1 Score: 260 bits (665), Expect = 4.740e-82 Identity = 135/170 (79.41%), Postives = 149/170 (87.65%), Query Frame = 1
Query: 49 IEELKYDPDDARYPFGAQGKRLLWGASSSGPLRHGLEPGRTRRQTRETHGAEEAPGPGETPDPEEALLATVLETGGMEIVEEYICNSLVKERWEEEQTCRMEEMYRRELQKVLGQEEQAFRAEVDASGSSQPQPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 558
+EELKYDP D RYP G +GK+LLWGAS++GPLRHGLE GRTR QTRE GA E GPGETP P+EALLAT+LETGG IVE+YICNSLVKE+W+EEQT RMEEMYRRE+Q+VLG E+QAF AEVDASGSSQP PDPQLSMTS IGQKPSDV+AVPMTYKDVMCSK KV W
Sbjct: 326 LEELKYDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRYQTREMQGAGEMSGPGETPVPKEALLATILETGGAGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLSMTSSIGQKPSDVKAVPMTYKDVMCSKCKVLW 495
BLAST of mRNA_E-fasciculatus_F_contig1594.4070.1 vs. uniprot
Match: A0A6H5L0R5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R5_9PHAE) HSP 1 Score: 253 bits (647), Expect = 5.370e-82 Identity = 134/170 (78.82%), Postives = 148/170 (87.06%), Query Frame = 1
Query: 49 IEELKYDPDDARYPFGAQGKRLLWGASSSGPLRHGLEPGRTRRQTRETHGAEEAPGPGETPDPEEALLATVLETGGMEIVEEYICNSLVKERWEEEQTCRMEEMYRRELQKVLGQEEQAFRAEVDASGSSQPQPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 558
+EELKYDP D RYP G +GK+LL GAS++GPLRHGLE GRTR+QTRE GA E PGPGETP+ EALLAT+L+TGG IVE YIC LVKE+W+EEQT RMEEMYRRE+Q+VLG E+QAF AEVDASGSSQP PDPQLSMTSPIGQKPSDVEAVPMTYKDVM SKYKVFW
Sbjct: 80 LEELKYDPADDRYPRGLEGKKLLLGASNAGPLRHGLESGRTRKQTREMQGAGEMPGPGETPN--EALLATILQTGGTGIVEYYICKPLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDVMFSKYKVFW 247
BLAST of mRNA_E-fasciculatus_F_contig1594.4070.1 vs. uniprot
Match: A0A6H5JRY6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY6_9PHAE) HSP 1 Score: 264 bits (674), Expect = 1.260e-81 Identity = 141/184 (76.63%), Postives = 155/184 (84.24%), Query Frame = 1
Query: 16 GDPGGDSSGGD---IEELKYDPDDARYPFGAQGKRLLWGASSSGPLRHGLEPGRTRRQTRETHGAEEAPGPGETPDPEEALLATVLETGGMEIVEEYICNSLVKERWEEEQTCRMEEMYRRELQKVLGQEEQAFRAEVDASGSSQPQPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 558
GD G D GD +E LKYDP D RYP G +GK+LLWGAS++GPLRHGLE GRTR+QTRE PGPGETPDPEEALLAT+LETGG IVE+Y CNSLVK +W+EEQT RMEEMYRRE+Q+VLG E+QAF AEVDASGSSQP PDPQL+MTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW
Sbjct: 114 GDGGSDGYPGDSENLEGLKYDPADERYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREM------PGPGETPDPEEALLATILETGGTGIVEDYTCNSLVKGQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLNMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 291
BLAST of mRNA_E-fasciculatus_F_contig1594.4070.1 vs. uniprot
Match: A0A6H5JYY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY3_9PHAE) HSP 1 Score: 249 bits (637), Expect = 6.520e-80 Identity = 130/170 (76.47%), Postives = 145/170 (85.29%), Query Frame = 1
Query: 49 IEELKYDPDDARYPFGAQGKRLLWGASSSGPLRHGLEPGRTRRQTRETHGAEEAPGPGETPDPEEALLATVLETGGMEIVEEYICNSLVKERWEEEQTCRMEEMYRRELQKVLGQEEQAFRAEVDASGSSQPQPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 558
+EELKYDP DARYP G +GK+LLWGAS++GPL HGLE GRTR+QTRE GA EEALLAT+LETGG IVE+YICNSLVK++W+EEQT RMEEMYRRE+Q+VLG E+QAF AEVDASGSSQP PDPQLS+TSPIGQKPSDVEAVPMTYKDVMCSKYKVFW
Sbjct: 159 LEELKYDPADARYPRGLEGKKLLWGASNAGPLPHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILETGGTGIVEDYICNSLVKKQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLSITSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 328
BLAST of mRNA_E-fasciculatus_F_contig1594.4070.1 vs. uniprot
Match: A0A6H5JI90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI90_9PHAE) HSP 1 Score: 257 bits (657), Expect = 8.140e-80 Identity = 131/167 (78.44%), Postives = 147/167 (88.02%), Query Frame = 1
Query: 58 LKYDPDDARYPFGAQGKRLLWGASSSGPLRHGLEPGRTRRQTRETHGAEEAPGPGETPDPEEALLATVLETGGMEIVEEYICNSLVKERWEEEQTCRMEEMYRRELQKVLGQEEQAFRAEVDASGSSQPQPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 558
LKYDP D YP G +GK+LLWGAS++GPLRHGLE GRTR++ RE GA E P PGETPDPEEALLAT+L+TGG IVE+YIC+SLVKE+W+EEQT RMEEMYRRE+Q+VLG E+QAF AEVDASGSSQP PDPQL MTSPIGQKPSDVEAVPMTY +VMCSKYKVFW
Sbjct: 306 LKYDPADDSYPRGLEGKKLLWGASNAGPLRHGLESGRTRKKAREMQGAGEMPVPGETPDPEEALLATILKTGGTGIVEDYICSSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLGMTSPIGQKPSDVEAVPMTYDNVMCSKYKVFW 472
BLAST of mRNA_E-fasciculatus_F_contig1594.4070.1 vs. uniprot
Match: A0A6H5JH49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH49_9PHAE) HSP 1 Score: 252 bits (643), Expect = 1.340e-78 Identity = 131/170 (77.06%), Postives = 145/170 (85.29%), Query Frame = 1
Query: 49 IEELKYDPDDARYPFGAQGKRLLWGASSSGPLRHGLEPGRTRRQTRETHGAEEAPGPGETPDPEEALLATVLETGGMEIVEEYICNSLVKERWEEEQTCRMEEMYRRELQKVLGQEEQAFRAEVDASGSSQPQPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 558
+EELKYDP D RYP G +GK+LLWGAS++GPLRHGLE GRTR+QTRE GA EEALLAT+LETGG IVE+YICNSLVKE+W++EQT RMEEMYRRE+Q+VLG E+QAF AEVDASGSSQP PDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW
Sbjct: 162 LEELKYDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILETGGTGIVEDYICNSLVKEQWDQEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFW 331 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1594.4070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1594.4070.1 >prot_E-fasciculatus_F_contig1594.4070.1 ID=prot_E-fasciculatus_F_contig1594.4070.1|Name=mRNA_E-fasciculatus_F_contig1594.4070.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=186bp DGDEPGDPGGDSSGGDIEELKYDPDDARYPFGAQGKRLLWGASSSGPLRHback to top mRNA from alignment at E-fasciculatus_F_contig1594:9624..10182+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1594.4070.1 ID=mRNA_E-fasciculatus_F_contig1594.4070.1|Name=mRNA_E-fasciculatus_F_contig1594.4070.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=559bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1594:9624..10182+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1594:9624..10182+ >mRNA_E-fasciculatus_F_contig1594.4070.1 ID=mRNA_E-fasciculatus_F_contig1594.4070.1|Name=mRNA_E-fasciculatus_F_contig1594.4070.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1116bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1594:9624..10182+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |