mRNA_E-fasciculatus_F_contig1594.4069.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig1594.4069.1
Unique Name	mRNA_E-fasciculatus_F_contig1594.4069.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot
Match: A0A6H5JXY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY5_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 3.800e-69
Identity = 104/119 (87.39%), Postives = 109/119 (91.60%), Query Frame = 1

Query:    1 VLQTDDGGVPVPVPNAAHVPEAPYNLLSLSTLAEEGHTYSGMKGGLTLTTKAEGKVWFPRTGKLLTQRGYQTQPTLDIACAAIIVPGDAKAATPTDLNEYHLAHGHVHEKALRTTAEQQ 357
            VLQT+DGGVPVPV NAAHVPEAPYNLLSLS+LAEEGHTYSGMKGGLTLTTKA G+VWFPRTGKLLTQRGYQ +PTL  ACAA+IVPGDAKAA PTDLNEYHLAHGH HE  LR TAEQQ
Sbjct:   15 VLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGGEVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKAANPTDLNEYHLAHGHAHETLLRITAEQQ 133

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BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot
Match: A0A6H5KWN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN1_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.450e-67
Identity = 104/119 (87.39%), Postives = 109/119 (91.60%), Query Frame = 1

Query:    1 VLQTDDGGVPVPVPNAAHVPEAPYNLLSLSTLAEEGHTYSGMKGGLTLTTKAEGKVWFPRTGKLLTQRGYQTQPTLDIACAAIIVPGDAKAATPTDLNEYHLAHGHVHEKALRTTAEQQ 357
            VLQT+DGGVPVPV NAAHVPEAPYNLLSLS+LAEEGHTYSGMKGGLTLTT+A G+VWFPRTGKLLTQRGYQ QPTL   CAA+IVPGDAKAATPTDLNEYHLAHGH HE  LR TAEQQ
Sbjct:   90 VLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGLTLTTQAGGEVWFPRTGKLLTQRGYQIQPTLHTVCAALIVPGDAKAATPTDLNEYHLAHGHAHETLLRITAEQQ 208

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BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot
Match: A0A6H5JGJ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ0_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.540e-65
Identity = 102/119 (85.71%), Postives = 106/119 (89.08%), Query Frame = 1

Query:    1 VLQTDDGGVPVPVPNAAHVPEAPYNLLSLSTLAEEGHTYSGMKGGLTLTTKAEGKVWFPRTGKLLTQRGYQTQPTLDIACAAIIVPGDAKAATPTDLNEYHLAHGHVHEKALRTTAEQQ 357
            VLQT+D GVPVP  NAAHVPEAPYNLLSLS+LAEEGHTYSGMKGGLTLTTKA G VWFPRTGKLLTQRGYQ +PTL  ACAA+IVPGDAKAA PTDLNEYHLAHGH HE  LR TAEQQ
Sbjct:   39 VLQTEDSGVPVPALNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGGDVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKAANPTDLNEYHLAHGHAHETLLRITAEQQ 157

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BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot
Match: A0A6H5KYD7_9PHAE (CCHC-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD7_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.540e-64
Identity = 104/119 (87.39%), Postives = 109/119 (91.60%), Query Frame = 1

Query:    1 VLQTDDGGVPVPVPNAAHVPEAPYNLLSLSTLAEEGHTYSGMKGGLTLTTKAEGKVWFPRTGKLLTQRGYQTQPTLDIACAAIIVPGDAKAATPTDLNEYHLAHGHVHEKALRTTAEQQ 357
            VLQT+DGGVPVPV NAAHVPEAPYNLLSLS+LAEEGHTYSGMKGGLTLTTKA G+VWFPRTGKLLTQRGYQ +PTL  ACAA+IVPGDAKAA PTDLNEYHLAHGH HE  LR TAEQQ
Sbjct:  347 VLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGGEVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKAANPTDLNEYHLAHGHAHETLLRITAEQQ 465

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BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot
Match: A0A6H5K1G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G4_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 2.200e-64
Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 1

Query:    1 VLQTDDGGVPVPVPNAAHVPEAPYNLLSLSTLAEEGHTYSGMKGGLTLTTKAEGKVWFPRTGKLLTQRGYQTQPTLDIACAAIIVPGDAKAATPTDLNEYHLAHGHVHEKALRTTAEQQ 357
            VLQT+DGGVP+PV NAAHVPEAPYNLLSLS+LAEEGHTYSGMKGGLTLTTKA G+VWFPRTGKLLTQRGYQ +PTL  ACAA+IVPGDAKAA PTDLNEYHLAHGH HE  LR TAEQQ
Sbjct:   39 VLQTEDGGVPLPVLNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGGEVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKAANPTDLNEYHLAHGHAHETLLRITAEQQ 157

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BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 9.860e-64
Identity = 100/119 (84.03%), Postives = 108/119 (90.76%), Query Frame = 1

Query:    1 VLQTDDGGVPVPVPNAAHVPEAPYNLLSLSTLAEEGHTYSGMKGGLTLTTKAEGKVWFPRTGKLLTQRGYQTQPTLDIACAAIIVPGDAKAATPTDLNEYHLAHGHVHEKALRTTAEQQ 357
            VLQT+DGGVPVP+ NAAHVPEAPYNLLSLS+LAEEGHTYSGMKGG+TLTTKA G+VWFPRTGKLLTQRGYQ +PTL  ACAA+IVPGDAKAA PT+ NEYHLAHGH HE  LR TAEQQ
Sbjct:   39 VLQTEDGGVPVPILNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGITLTTKAGGEVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKAANPTEPNEYHLAHGHDHETLLRITAEQQ 157

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BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot
Match: A0A6H5KVR9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR9_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 4.900e-63
Identity = 102/119 (85.71%), Postives = 107/119 (89.92%), Query Frame = 1

Query:    1 VLQTDDGGVPVPVPNAAHVPEAPYNLLSLSTLAEEGHTYSGMKGGLTLTTKAEGKVWFPRTGKLLTQRGYQTQPTLDIACAAIIVPGDAKAATPTDLNEYHLAHGHVHEKALRTTAEQQ 357
            VLQT+DGGVPV V NA HVPEAPYNLLSLS+LAEEGHTYSGMKGGLTLTTKA G+VWFPRTGKLLTQRGYQ +PTL  ACAA+IVPGDAKAA PTDLNEYHLAHGH HE  LR TAEQQ
Sbjct:  260 VLQTEDGGVPVSVLNAVHVPEAPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGGEVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKAANPTDLNEYHLAHGHAHETLLRITAEQQ 378

[Close]

BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot
Match: A0A6H5K462_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K462_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 6.340e-63
Identity = 104/119 (87.39%), Postives = 109/119 (91.60%), Query Frame = 1

Query:    1 VLQTDDGGVPVPVPNAAHVPEAPYNLLSLSTLAEEGHTYSGMKGGLTLTTKAEGKVWFPRTGKLLTQRGYQTQPTLDIACAAIIVPGDAKAATPTDLNEYHLAHGHVHEKALRTTAEQQ 357
            VLQT+DGGVPVPV NAAHVPEAPYNLLSLS+LAEEGHTYSGMKGGLTLTTKA G+VWFPRTGKLLTQRGYQ +PTL  ACAA+IVPGDAKAA PTDLNEYHLAHGH HE  LR TAEQQ
Sbjct:  563 VLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGGEVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKAANPTDLNEYHLAHGHAHETLLRITAEQQ 681

[Close]

BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.300e-62
Identity = 103/119 (86.55%), Postives = 108/119 (90.76%), Query Frame = 1

Query:    1 VLQTDDGGVPVPVPNAAHVPEAPYNLLSLSTLAEEGHTYSGMKGGLTLTTKAEGKVWFPRTGKLLTQRGYQTQPTLDIACAAIIVPGDAKAATPTDLNEYHLAHGHVHEKALRTTAEQQ 357
            VLQT+ GGVPVPV NAAHVPEAPYNLLSLS+LAEEGHTYSGMKGGLTLTTKA G+VWFPRTGKLLTQRGYQ +PTL IACA +IVPGDAKAA PTDLNEYHLAHGH HE  LR TAEQQ
Sbjct:   36 VLQTEGGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGGEVWFPRTGKLLTQRGYQIKPTLHIACAVLIVPGDAKAANPTDLNEYHLAHGHAHETLLRITAEQQ 154

[Close]

BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot
Match: A0A6H5L1E7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E7_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.250e-61
Identity = 104/119 (87.39%), Postives = 108/119 (90.76%), Query Frame = 1

Query:    1 VLQTDDGGVPVPVPNAAHVPEAPYNLLSLSTLAEEGHTYSGMKGGLTLTTKAEGKVWFPRTGKLLTQRGYQTQPTLDIACAAIIVPGDAKAATPTDLNEYHLAHGHVHEKALRTTAEQQ 357
            VLQT+DGGVPVPV NAAHVPEAPYNLLSLS+LAEEGHTYSGMKGGLTLTTKA G+VWFPRTGKLLTQRGYQ  PTL  ACAA+IVPGDAKAA PTDLNEYHLAHGH HE  LR TAEQQ
Sbjct:  832 VLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGGEVWFPRTGKLLTQRGYQINPTLYTACAALIVPGDAKAANPTDLNEYHLAHGHAHETLLRITAEQQ 950

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig1594.4069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JXY5_9PHAE	3.800e-69	87.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWN1_9PHAE	1.450e-67	87.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JGJ0_9PHAE	2.540e-65	85.71	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KYD7_9PHAE	1.540e-64	87.39	CCHC-type domain-containing protein n=3 Tax=Ectoca...	[more]
A0A6H5K1G4_9PHAE	2.200e-64	86.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KGJ8_9PHAE	9.860e-64	84.03	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KVR9_9PHAE	4.900e-63	85.71	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K462_9PHAE	6.340e-63	87.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L1A7_9PHAE	1.300e-62	86.55	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L1E7_9PHAE	1.250e-61	87.39	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig1594	contig	E-fasciculatus_F_contig1594:7965..8323 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	359
Cds size	357
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928062.9809577-CDS-E-fasciculatus_F_contig1594:7964..8321	1622928062.9809577-CDS-E-fasciculatus_F_contig1594:7964..8321	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig1594 7965..8321 +
1695995807.664638-CDS-E-fasciculatus_F_contig1594:7964..8321	1695995807.664638-CDS-E-fasciculatus_F_contig1594:7964..8321	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig1594 7965..8321 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig1594.4069.1	prot_E-fasciculatus_F_contig1594.4069.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig1594 7965..8321 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig1594:7965..8323+
coding sequence from alignment at E-fasciculatus_F_contig1594:7965..8323+

protein sequence of mRNA_E-fasciculatus_F_contig1594.4069.1

>prot_E-fasciculatus_F_contig1594.4069.1 ID=prot_E-fasciculatus_F_contig1594.4069.1|Name=mRNA_E-fasciculatus_F_contig1594.4069.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=119bp
VLQTDDGGVPVPVPNAAHVPEAPYNLLSLSTLAEEGHTYSGMKGGLTLTT
KAEGKVWFPRTGKLLTQRGYQTQPTLDIACAAIIVPGDAKAATPTDLNEY
HLAHGHVHEKALRTTAEQQ

mRNA from alignment at E-fasciculatus_F_contig1594:7965..8323+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig1594.4069.1 ID=mRNA_E-fasciculatus_F_contig1594.4069.1|Name=mRNA_E-fasciculatus_F_contig1594.4069.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=359bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1594:7965..8323+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCTACAGACGGATGATGGTGGAGTACCTGTACCAGTGCCAAATGCTGC
CCATGTACCAGAGGCCCCCTACAACCTCCTATCCCTGTCTACGCTGGCTG
AGGAGGGCCACACGTACTCGGGGATGAAAGGGGGCCTCACGCTGACCACG
AAAGCCGAGGGGAAAGTGTGGTTCCCCCGGACTGGAAAGCTTCTGACCCA
ACGAGGCTATCAAACACAGCCTACGCTAGACATCGCCTGTGCCGCAATCA
TTGTTCCTGGCGATGCGAAAGCAGCCACCCCCACTGACCTCAACGAGTAC
CACCTTGCACACGGCCACGTCCACGAGAAAGCGCTCAGGACAACGGCGGA
GCAGCAGGG

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1594:7965..8323+

>mRNA_E-fasciculatus_F_contig1594.4069.1 ID=mRNA_E-fasciculatus_F_contig1594.4069.1|Name=mRNA_E-fasciculatus_F_contig1594.4069.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1594:7965..8323+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCTACAGACGGATGATGGTGGAGTACCTGTACCAGTGCCAAATGCTGC
CCATGTACCAGAGGCCCCCTACAACCTCCTATCCCTGTCTACGCTGGCTG
AGGAGGGCCACACGTACTCGGGGATGAAAGGGGGCCTCACGCTGACCACG
AAAGCCGAGGGGAAAGTGTGGTTCCCCCGGACTGGAAAGCTTCTGACCCA
ACGAGGCTATCAAACACAGCCTACGCTAGACATCGCCTGTGCCGCAATCA
TTGTTCCTGGCGATGCGAAAGCAGCCACCCCCACTGACCTCAACGAGTAC
CACCTTGCACACGGCCACGTCCACGAGAAAGCGCTCAGGACAACGGCGGA
GCAGCAGGTCCTACAGACGGATGATGGTGGAGTACCTGTACCAGTGCCAA
ATGCTGCCCATGTACCAGAGGCCCCCTACAACCTCCTATCCCTGTCTACG
CTGGCTGAGGAGGGCCACACGTACTCGGGGATGAAAGGGGGCCTCACGCT
GACCACGAAAGCCGAGGGGAAAGTGTGGTTCCCCCGGACTGGAAAGCTTC
TGACCCAACGAGGCTATCAAACACAGCCTACGCTAGACATCGCCTGTGCC
GCAATCATTGTTCCTGGCGATGCGAAAGCAGCCACCCCCACTGACCTCAA
CGAGTACCACCTTGCACACGGCCACGTCCACGAGAAAGCGCTCAGGACAA
CGGCGGAGCAGCAG