mRNA_E-fasciculatus_F_contig15937.4066.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15937.4066.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE) HSP 1 Score: 286 bits (733), Expect = 9.830e-87 Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 1
Query: 4 VPSTMTGILGPSGAGKSSLLDLLAGRKRRGEGRTTGSVSLAYDGSTSNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGTSFAERAERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGL 465
VPSTMTGILGPSGAGKSSLLDL+AGRKRRGEGRTTGSVSLAYDG T NGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPG SFAER ERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGL
Sbjct: 527 VPSTMTGILGPSGAGKSSLLDLVAGRKRRGEGRTTGSVSLAYDG-TGNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGASFAEREERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGL 679
BLAST of mRNA_E-fasciculatus_F_contig15937.4066.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI) HSP 1 Score: 211 bits (538), Expect = 1.700e-60 Identity = 113/152 (74.34%), Postives = 123/152 (80.92%), Query Frame = 1
Query: 10 STMTGILGPSGAGKSSLLDLLAGRKRRGEGRTTGSVSLAYDGSTSNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGTSFAERAERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGL 465
ST+TGILGPSGAGKSSLLD+LAGRKR GEGR +G VS++ DG G G E +RRV GYV QEDVLPGTLTCYEHLMFHARLRMP S AER ER L V ELGL RVADSR+GD +RGLSGGE+RRLSIA EL+A P LLF DEPTTGL
Sbjct: 594 STLTGILGPSGAGKSSLLDILAGRKRSGEGRASGHVSVSLDGRGGRG-GPEDIRRVAGYVPQEDVLPGTLTCYEHLMFHARLRMPRKASHAERRERALAVLAELGLSRVADSRVGDARKRGLSGGEKRRLSIAAELMAGPPLLFLDEPTTGL 744
BLAST of mRNA_E-fasciculatus_F_contig15937.4066.1 vs. uniprot
Match: A0A6H5KT00_9PHAE (ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT00_9PHAE) HSP 1 Score: 208 bits (529), Expect = 2.730e-59 Identity = 110/154 (71.43%), Postives = 122/154 (79.22%), Query Frame = 1
Query: 4 VPSTMTGILGPSGAGKSSLLDLLAGRKRRGEGRTTGSVSLAYDGSTSNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGTSFAERAERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGL 465
+PST+TGILGPSGAGKSSLLD+LAGRKR GEGR +G V ++ DG G E +RRV GYV QEDVLPGTLTCYEHLMFHARLRMP + ER ER L V ELGL RVADSR+GD +RGLSGGE+RRLSIA EL+A P LLF DEPTTGL
Sbjct: 494 LPSTLTGILGPSGAGKSSLLDILAGRKRSGEGRASGQVFVSLDGRGGRGGPAE-IRRVAGYVPQEDVLPGTLTCYEHLMFHARLRMPRKATHGERRERALAVLGELGLSRVADSRVGDARKRGLSGGEKRRLSIAAELMAGPPLLFLDEPTTGL 646
BLAST of mRNA_E-fasciculatus_F_contig15937.4066.1 vs. uniprot
Match: A0A835Z9G6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G6_9STRA) HSP 1 Score: 154 bits (389), Expect = 1.980e-41 Identity = 90/155 (58.06%), Postives = 108/155 (69.68%), Query Frame = 1
Query: 16 MTGILGPSGAGKSSLLDLLAGRKRRGEG-RTTGSVSLAYDGSTSNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGTS----FAERAERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGL 465
+TG+LGPSGAGK++LL+LLAGR+ G R S +L DG+ + E VR V GYV+Q+DVLPGTLT YEHL FHA LR+P G +R RVL V + LGL VADS IGD RG+SGGERRR+SIA EL+ RP LLF DEPT+GL
Sbjct: 1 VTGLLGPSGAGKTTLLELLAGRRAAGGAERGAWSGALELDGAAAASP--EDVRAVSGYVAQDDVLPGTLTVYEHLAFHAALRLPRGHGRGGGATQRTARVLEVIDNLGLGAVADSLIGDAFRRGISGGERRRVSIAAELLTRPPLLFLDEPTSGL 153
BLAST of mRNA_E-fasciculatus_F_contig15937.4066.1 vs. uniprot
Match: A0A7S0KER9_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KER9_MICPS) HSP 1 Score: 147 bits (372), Expect = 2.050e-39 Identity = 86/157 (54.78%), Postives = 105/157 (66.88%), Query Frame = 1
Query: 10 STMTGILGPSGAGKSSLLDLLAGRKRRGEGRTTGSVSLAYDGSTSNGNGVEA--VRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGTSFAERAERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGLGTT 474
S + ILGPSGAGKS+LLD LAGR RG+ +A+ +G V A VR GYV Q DVLPGT T +EHLMF+A LR+PP T+ +E V ELGL +VA+S IGDE RGLSGGE+RR+SIATEL+ P ++F DEPTTGL +T
Sbjct: 185 SGLFAILGPSGAGKSTLLDFLAGRTPRGQ--------VAHGTVRLDGEAVSAREVRHASGYVQQTDVLPGTSTVWEHLMFNAALRLPPDTARSEAYRVVAGWMRELGLVKVAESLIGDEFTRGLSGGEKRRVSIATELLTSPGIMFLDEPTTGLDST 333
BLAST of mRNA_E-fasciculatus_F_contig15937.4066.1 vs. uniprot
Match: A0A7S0KCW1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KCW1_9CHLO) HSP 1 Score: 147 bits (372), Expect = 2.200e-38 Identity = 80/155 (51.61%), Postives = 108/155 (69.68%), Query Frame = 1
Query: 25 ILGPSGAGKSSLLDLLAGRKRR-----GEGRTTGSVSLAYDGSTSNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGTSFAERAERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGLGTT 474
ILGPSGAGK++LLD+LAGR R G+ R G ++ +RR+ GYV+Q+DVLPGT T +EHL+FHA+LR+P GTS +RV + LG++++ADS IGD+ +RGLSGGE+RR+SIATEL+ P ++F DEPTTGL +T
Sbjct: 470 ILGPSGAGKTTLLDILAGRATRTHSIRGDIRVNGQPIVSSQ-----------IRRLSGYVTQDDVLPGTATVHEHLLFHAKLRLPSGTSSEAIRKRVCATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDST 613
BLAST of mRNA_E-fasciculatus_F_contig15937.4066.1 vs. uniprot
Match: C1E9X3_MICCC (ATP-binding cassette superfamily (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E9X3_MICCC) HSP 1 Score: 145 bits (365), Expect = 3.410e-38 Identity = 85/149 (57.05%), Postives = 102/149 (68.46%), Query Frame = 1
Query: 28 LGPSGAGKSSLLDLLAGRKRRGEGRTTGSVSLAYDGSTSNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGTSFAERAERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGLGTT 474
LGPSGAGKS+LLD LAGR RG+ G+V L DG + VR GYV Q DVLPGT T +EHLMF+A LR+PP T+ +E V ELGL +VA+S IGDE RGLSGGE+RR+SIATEL+ P ++F DEPTTGL +T
Sbjct: 1 LGPSGAGKSTLLDFLAGRTPRGQ-VAHGTVRL--DGEVVS---AREVRHASGYVQQTDVLPGTSTVWEHLMFNAALRLPPDTARSEMYRVVAGWMRELGLVKVAESLIGDEFTRGLSGGEKRRVSIATELLTSPGIMFLDEPTTGLDST 143
BLAST of mRNA_E-fasciculatus_F_contig15937.4066.1 vs. uniprot
Match: C1E9X4_MICCC (ATP-binding cassette superfamily (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E9X4_MICCC) HSP 1 Score: 137 bits (344), Expect = 1.390e-37 Identity = 78/151 (51.66%), Postives = 102/151 (67.55%), Query Frame = 1
Query: 25 ILGPSGAGKSSLLDLLAGRKRRGEGRTTGSVSLAYDGSTSNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGTSFAERAERVLWVT-EELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGLGTT 474
ILGPSGAGK++L+D+LAGR G G + + TS +R V GYV+Q+DVLPGT T +EHL FH LR+P A R + V+W T ++LG+ ++A S IGDE RGLSGGE+RR+SIATEL+ P ++F DEPTTGL +T
Sbjct: 19 ILGPSGAGKTTLIDILAGRPSVGH-EVAGELRVNGRAMTS-----AEMRAVSGYVTQDDVLPGTSTVWEHLTFHGALRLPGNVERA-RLKAVIWQTMQDLGISKIAHSFIGDEFTRGLSGGEKRRVSIATELLTSPGIMFLDEPTTGLDST 162
BLAST of mRNA_E-fasciculatus_F_contig15937.4066.1 vs. uniprot
Match: A0A7S0KBP1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KBP1_9CHLO) HSP 1 Score: 145 bits (366), Expect = 1.510e-37 Identity = 81/153 (52.94%), Postives = 107/153 (69.93%), Query Frame = 1
Query: 16 MTGILGPSGAGKSSLLDLLAGRKRRGEGRTTGSVSLAYDGSTSNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGTSFAERAERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGLGTT 474
M I+GPSGAGK++LLD L+GR T G+V + +G ++ E VR + GYV EDVLPGT T YEHLMFHA+LR+P TS +RV + LG++++ADS IGD+ +RGLSGGE+RR+SIATEL+ P ++F DEPTTGL +T
Sbjct: 469 MCAIMGPSGAGKTTLLDRLSGRLSSKVYTTHGNVYI--NGKLAS---CEDVRSISGYVIAEDVLPGTATVYEHLMFHAKLRLPASTSSKTIRKRVCATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDST 616
BLAST of mRNA_E-fasciculatus_F_contig15937.4066.1 vs. uniprot
Match: F0ZYY1_DICPU (Uncharacterized protein ABCG24 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZYY1_DICPU) HSP 1 Score: 144 bits (363), Expect = 5.800e-37 Identity = 81/153 (52.94%), Postives = 109/153 (71.24%), Query Frame = 1
Query: 7 PSTMTGILGPSGAGKSSLLDLLAGRKRRGEGRTTGSVSLAYDGSTSNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGTSFAERAERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGL 465
P +T ++G SG+GK+SLLD+L+GRK G GSV + +G+ + N +R+ GYV+Q+D++ GTLTC EHLMF A L++P S +A+RV V EELGL RVAD+ IG +RG+SGGERRRLSIATEL+ P++LF DEPT+GL
Sbjct: 465 PGQLTALMGLSGSGKTSLLDILSGRKN--VGLLEGSVLI--NGAPVSKN----FKRISGYVTQDDIMIGTLTCREHLMFAAELKLPEHMSHEYKAQRVTDVLEELGLTRVADNTIGTPEKRGISGGERRRLSIATELIVNPSILFLDEPTSGL 609 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15937.4066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15937.4066.1 >prot_E-fasciculatus_F_contig15937.4066.1 ID=prot_E-fasciculatus_F_contig15937.4066.1|Name=mRNA_E-fasciculatus_F_contig15937.4066.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=153bp MTGILGPSGAGKSSLLDLLAGRKRRGEGRTTGSVSLAYDGSTSNGNGVEAback to top mRNA from alignment at E-fasciculatus_F_contig15937:15..488- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15937.4066.1 ID=mRNA_E-fasciculatus_F_contig15937.4066.1|Name=mRNA_E-fasciculatus_F_contig15937.4066.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=474bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15937:15..488- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15937:15..488- >mRNA_E-fasciculatus_F_contig15937.4066.1 ID=mRNA_E-fasciculatus_F_contig15937.4066.1|Name=mRNA_E-fasciculatus_F_contig15937.4066.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=918bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15937:15..488- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |