mRNA_E-fasciculatus_F_contig15935.4065.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15935.4065.1
Unique NamemRNA_E-fasciculatus_F_contig15935.4065.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15935.4065.1 vs. uniprot
Match: A0A6H5JF31_9PHAE (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF31_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 2.570e-90
Identity = 142/144 (98.61%), Postives = 144/144 (100.00%), Query Frame = 1 
Query:    1 QGYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPKSSPGSSLSEATTLQLEF 432
            +GYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNP+SSPGSSLSEATTLQLEF
Sbjct:  368 KGYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPRSSPGSSLSEATTLQLEF 511
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15935.4065.1 vs. uniprot
Match: D8LGW4_ECTSI (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW4_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 6.880e-89
Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 1 
Query:    1 QGYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPKSSPGSSLSEATTLQLEF 432
            +GYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGE+ EFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNP+SSPGSSLSEATTLQLEF
Sbjct:  363 KGYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEKGEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPRSSPGSSLSEATTLQLEF 506
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15935.4065.1 vs. uniprot
Match: A0A8J4YFQ8_CHIOP (alpha-1,2-Mannosidase n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4YFQ8_CHIOP)

HSP 1 Score: 169 bits (428), Expect = 7.230e-47
Identity = 82/145 (56.55%), Postives = 103/145 (71.03%), Query Frame = 1 
Query:    1 QGYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPKSSPGSSLSEATTLQLEFR 435
            +GY THAWG D L P++R      RLGLT+VD+MDTLW+   REEF     WV   ++ +++Q+VN+FETTIRVLGGLL+ YHL+ E+  L KA DLG RL   F+S SG+P++DVNL S RA  PK  P SS SE TT+QLEFR
Sbjct:  165 KGYKTHAWGHDHLRPISRTRSDWLRLGLTLVDAMDTLWIMDLREEFGEAREWVATQLNFNLNQDVNLFETTIRVLGGLLSTYHLTKEQLFLDKAVDLGERLVSGFNSGSGVPFADVNLYSRRASKPKWGPDSSTSEVTTIQLEFR 309
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15935.4065.1 vs. uniprot
Match: UPI001E677BDF (endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like isoform X1 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E677BDF)

HSP 1 Score: 167 bits (422), Expect = 4.250e-46
Identity = 81/145 (55.86%), Postives = 105/145 (72.41%), Query Frame = 1 
Query:    1 QGYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPKSSPGSSLSEATTLQLEFR 435
            +GY T+AWG D L P++R      RLGLT+VD++DTLW+   +EEF+    WV+  +  +++Q+VN+FETTIRVLGGLL+AYHL+ E+  L KA DLG RL   F+S SG+PY+DVNL S RA  PK  P SS SE TT+QLEFR
Sbjct:  149 KGYKTYAWGHDHLKPISRTRNDWLRLGLTLVDALDTLWIMDLKEEFSEAQEWVSTQLHFNLNQDVNLFETTIRVLGGLLSAYHLTKEQVFLDKAVDLGDRLIAGFNSGSGVPYADVNLYSRRASKPKWGPDSSTSEVTTIQLEFR 293
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15935.4065.1 vs. uniprot
Match: UPI000B78BB50 (endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like n=1 Tax=Aedes aegypti TaxID=7159 RepID=UPI000B78BB50)

HSP 1 Score: 162 bits (411), Expect = 7.780e-46
Identity = 82/145 (56.55%), Postives = 103/145 (71.03%), Query Frame = 1 
Query:    1 QGYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPKSSPGSSLSEATTLQLEFR 435
            +GY   AWG D L P++      F LGLTIVDS+DTL++   +EE+    +WV   +  DV+++VN+FE TIRVLGGLL+ YHLSG++  L KA DLG+RL   FDSPSGIPYSDVN+ + +A  PK SP SS SE TTLQLEFR
Sbjct:  239 RGYKEFAWGHDNLKPISMSYSDWFGLGLTIVDSLDTLYIMDLQEEYDEARNWVDQYLRFDVNRDVNLFEVTIRVLGGLLSTYHLSGDKMYLDKALDLGQRLLPCFDSPSGIPYSDVNIETMKAHPPKWSPDSSTSEVTTLQLEFR 383
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15935.4065.1 vs. uniprot
Match: A0A1L8DR46_9DIPT (alpha-1,2-Mannosidase (Fragment) n=2 Tax=Nyssomyia neivai TaxID=330878 RepID=A0A1L8DR46_9DIPT)

HSP 1 Score: 166 bits (419), Expect = 9.180e-46
Identity = 82/143 (57.34%), Postives = 105/143 (73.43%), Query Frame = 1 
Query:    7 YTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPKSSPGSSLSEATTLQLEFR 435
            Y T+AWG D L PL++     F LGLTIVD++DT+++   REEF    +W+ N +  D +++VN+FE TIRV+GGLL+AYHLSG++  L KAADLG RL   F+S SGIPYSDVNL + RA +PK SP SS SE TT+QLEFR
Sbjct:  135 YRTYAWGHDNLKPLSQGHHDWFGLGLTIVDALDTMYIMNLREEFEEARNWIDNGLSFDQNRDVNLFEVTIRVMGGLLSAYHLSGDQMFLLKAADLGNRLLPCFESQSGIPYSDVNLATLRAHSPKWSPDSSTSEVTTIQLEFR 277
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15935.4065.1 vs. uniprot
Match: A0A7R8WIL2_9CRUS (alpha-1,2-Mannosidase n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WIL2_9CRUS)

HSP 1 Score: 161 bits (408), Expect = 1.080e-45
Identity = 87/144 (60.42%), Postives = 100/144 (69.44%), Query Frame = 1 
Query:    7 YTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQN-VNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPKSSPGSSLSEATTLQLEFR 435
            Y   AWG D L+P T+     F LGLTIVDS+DTLWL G ++EF++   WV   +DL  +   VN FETTIRVLGGLL+AYHLSG+   L KA DLG RL  AF SPSGIPYSDV L+ GRA +P  S  SS SEA TLQLEFR
Sbjct:  153 YEGFAWGHDFLSPQTKSFTDWFGLGLTIVDSLDTLWLMGLKDEFSKAREWVATELDLAKNARWVNTFETTIRVLGGLLSAYHLSGDRIFLDKAVDLGERLLPAFGSPSGIPYSDVRLKDGRARSPTWSSESSTSEAATLQLEFR 296
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15935.4065.1 vs. uniprot
Match: A0A8D7ZV41_CULPI (alpha-1,2-Mannosidase n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D7ZV41_CULPI)

HSP 1 Score: 163 bits (413), Expect = 1.110e-45
Identity = 81/145 (55.86%), Postives = 104/145 (71.72%), Query Frame = 1 
Query:    1 QGYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPKSSPGSSLSEATTLQLEFR 435
            +GY  +AWG D L P++      F LGLTIVDS+DT+++   +EEF    +W+   +  DV+++VN+FE TIRVLGGLL+ YHLSG++  L KA DLG+RL   FDSPSGIPYSDVN+ + +A  PK SP SS SE TTLQLEFR
Sbjct:  216 RGYKEYAWGHDNLKPISMSYSDWFGLGLTIVDSLDTMYIMDLQEEFDEARNWIDQYLRFDVNRDVNLFEVTIRVLGGLLSTYHLSGDKMFLDKALDLGQRLLPCFDSPSGIPYSDVNIETMKARPPKWSPDSSTSEVTTLQLEFR 360
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15935.4065.1 vs. uniprot
Match: A0A0P4WR91_SCYOL (alpha-1,2-Mannosidase n=5 Tax=Portunidae TaxID=6757 RepID=A0A0P4WR91_SCYOL)

HSP 1 Score: 166 bits (419), Expect = 1.300e-45
Identity = 80/145 (55.17%), Postives = 104/145 (71.72%), Query Frame = 1 
Query:    1 QGYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPKSSPGSSLSEATTLQLEFR 435
            +GY T+AWG D L P++R      RLGLT+VD++DTLW+   REEF+    WV   ++ +++Q+VN+FETTIRVLGGLL+ YHL+ E+  L KA DLG RL   F+S SG+P++DVNL S RA  PK  P SS SE TT+QLEFR
Sbjct:  159 KGYKTYAWGHDHLRPVSRTRSDWLRLGLTLVDALDTLWIMDLREEFSEAREWVATQLNFNLNQDVNLFETTIRVLGGLLSTYHLTKEQLFLDKAVDLGERLVSGFNSGSGVPFADVNLYSRRASKPKWGPDSSTSEVTTIQLEFR 303
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15935.4065.1 vs. uniprot
Match: A0A8D8ICZ8_CULPI (alpha-1,2-Mannosidase (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8ICZ8_CULPI)

HSP 1 Score: 163 bits (413), Expect = 1.750e-45
Identity = 81/145 (55.86%), Postives = 104/145 (71.72%), Query Frame = 1 
Query:    1 QGYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCLHWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRRLSKAFDSPSGIPYSDVNLRSGRAFNPKSSPGSSLSEATTLQLEFR 435
            +GY  +AWG D L P++      F LGLTIVDS+DT+++   +EEF    +W+   +  DV+++VN+FE TIRVLGGLL+ YHLSG++  L KA DLG+RL   FDSPSGIPYSDVN+ + +A  PK SP SS SE TTLQLEFR
Sbjct:  240 RGYKEYAWGHDNLKPISMSYSDWFGLGLTIVDSLDTMYIMDLQEEFDEARNWIDQYLRFDVNRDVNLFEVTIRVLGGLLSTYHLSGDKMFLDKALDLGQRLLPCFDSPSGIPYSDVNIETMKARPPKWSPDSSTSEVTTLQLEFR 384
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15935.4065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF31_9PHAE2.570e-9098.61alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LGW4_ECTSI6.880e-8997.22alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculos... [more]
A0A8J4YFQ8_CHIOP7.230e-4756.55alpha-1,2-Mannosidase n=1 Tax=Chionoecetes opilio ... [more]
UPI001E677BDF4.250e-4655.86endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
UPI000B78BB507.780e-4656.55endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
A0A1L8DR46_9DIPT9.180e-4657.34alpha-1,2-Mannosidase (Fragment) n=2 Tax=Nyssomyia... [more]
A0A7R8WIL2_9CRUS1.080e-4560.42alpha-1,2-Mannosidase n=1 Tax=Cyprideis torosa Tax... [more]
A0A8D7ZV41_CULPI1.110e-4555.86alpha-1,2-Mannosidase n=1 Tax=Culex pipiens TaxID=... [more]
A0A0P4WR91_SCYOL1.300e-4555.17alpha-1,2-Mannosidase n=5 Tax=Portunidae TaxID=675... [more]
A0A8D8ICZ8_CULPI1.750e-4555.86alpha-1,2-Mannosidase (Fragment) n=1 Tax=Culex pip... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15935contigE-fasciculatus_F_contig15935:602..2149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score287.3
Seed ortholog evalue3.9e-75
Seed eggNOG ortholog2880.D8LGW4
Preferred nameMAN1B1
KEGG koko:K01230
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005789,GO:0005794,GO:0005802,GO:0005975,GO:0006464,GO:0006491,GO:0006508,GO:0006511,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009311,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0033554,GO:0034976,GO:0035010,GO:0035977,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0036509,GO:0036510,GO:0036511,GO:0036512,GO:0042175,GO:0042221,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:0097466,GO:0097708,GO:0098588,GO:0098791,GO:0098827,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1904380,GO:1904382,GO:1904587
EggNOG free text desc.mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
EggNOG OGsKOG2431@1,KOG2431@2759
EC3.2.1.113
COG Functional cat.G
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size438
Cds size438
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15935.4065.1prot_E-fasciculatus_F_contig15935.4065.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15935 602..2149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928062.7448328-CDS-E-fasciculatus_F_contig15935:601..7161622928062.7448328-CDS-E-fasciculatus_F_contig15935:601..716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15935 602..716 -
1695995807.5857203-CDS-E-fasciculatus_F_contig15935:601..7161695995807.5857203-CDS-E-fasciculatus_F_contig15935:601..716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15935 602..716 -
1622928062.7578146-CDS-E-fasciculatus_F_contig15935:908..10421622928062.7578146-CDS-E-fasciculatus_F_contig15935:908..1042Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15935 909..1042 -
1695995807.6032379-CDS-E-fasciculatus_F_contig15935:908..10421695995807.6032379-CDS-E-fasciculatus_F_contig15935:908..1042Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15935 909..1042 -
1622928062.7674716-CDS-E-fasciculatus_F_contig15935:1429..15281622928062.7674716-CDS-E-fasciculatus_F_contig15935:1429..1528Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15935 1430..1528 -
1695995807.6149533-CDS-E-fasciculatus_F_contig15935:1429..15281695995807.6149533-CDS-E-fasciculatus_F_contig15935:1429..1528Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15935 1430..1528 -
1622928062.7772582-CDS-E-fasciculatus_F_contig15935:2059..21491622928062.7772582-CDS-E-fasciculatus_F_contig15935:2059..2149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15935 2060..2149 -
1695995807.6246445-CDS-E-fasciculatus_F_contig15935:2059..21491695995807.6246445-CDS-E-fasciculatus_F_contig15935:2059..2149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15935 2060..2149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15935.4065.1

>prot_E-fasciculatus_F_contig15935.4065.1 ID=prot_E-fasciculatus_F_contig15935.4065.1|Name=mRNA_E-fasciculatus_F_contig15935.4065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=146bp
QGYTTHAWGTDELNPLTRRGKTSFRLGLTIVDSMDTLWLAGEREEFARCL
HWVTNVMDLDVDQNVNVFETTIRVLGGLLAAYHLSGEEALLTKAADLGRR
LSKAFDSPSGIPYSDVNLRSGRAFNPKSSPGSSLSEATTLQLEFR*
back to top

mRNA from alignment at E-fasciculatus_F_contig15935:602..2149-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15935.4065.1 ID=mRNA_E-fasciculatus_F_contig15935.4065.1|Name=mRNA_E-fasciculatus_F_contig15935.4065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1548bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15935:602..2149- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGATACACTACCCACGCCTGGGGGACGGACGAGCTCAACCCCTTGAC
GAGGCGAGGCAAGACGTCCTTCAGACTCGGCCTAACCATCGTGAGTGTGG
ACTATAGTATGCTGGTGTGTACTGCGAGGGCATCCCTCATTTGAAGCTCG
TTCGTGCTCCCACTGGCCGTCGCCCCAACCCAACCTACGGCGGGATGGTC
TTGTCGGGGTGTCAGATGATGTCGTAGCCACGTTGCCTGGACAGATCCAG
ACGGTGTTGGTGTCTGGTTGAGCACCGGACCTGCCATTGCCACGTTTTTG
TTGCCCGACACGAGGGGGTCGTTCATCGTAATGTGAGGCAAAGAACGAGT
AAACAGCAAAGGAAGTGTTGTGCAATTCGTAGCAACGACCTGTTGTGGCG
GTGCGGGACACGGTCGAGGCAGCAATAACCGCGGCGAGTTTGTTTTGTTG
GTCTTGCTGCCCCTTCGCCACCTCTCCTGAAAGCGAGGCATTTCGAGAAG
TAGTCCATGCCGCACCCAACACACCGCCTGGCTCCGCTTCCTTTTTCAAA
CCCAGACAGCCGAGCGATCCGTCATATCCTCACCTTGACCATCTCGAGTG
TTTGTTTCCCCCCGAGAGCAGGTCGACTCGATGGACACGCTGTGGCTGGC
CGGAGAGAGGGAGGAGTTCGCCCGGTGCCTGCATTGGGTCACCAACGTGA
TGGACCTGGACGTCGACCAGGTGAATGAGTGATCGCCGTCTTGGTTGCGT
GGACGGGGCGCAGCAGAGGCGTTGTCGTTCGTCGTCTCTGAGGGAGGAGA
TCGATCTTGCCCTGGTGCTCTGATGATTTGAATCGTCATCCCTTTGGCCG
AACTTGCAGTTTCGCGTCGACGGGGGAGAGAGGCTGCCCTGGTACATAAA
CTGCCGTTCATTGCTGGGGCTGTCCTCCCCGCGTTGCTCCTTCGTTGGGG
GGGCATACAGAGCGTTATGCCCTCATTGATTTAGTTATTCCTCCGGATTC
TCTCCTCCCTCTGGTGTAGGTGTGAAATTTGTTTTTGTGCACGTACCCAC
CTTTTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGTTGTT
GTCGCAGAATGTGAACGTCTTCGAGACGACCATCCGGGTGCTCGGAGGAC
TGCTGGCGGCGTACCACCTGTCCGGCGAGGAGGCCCTCCTGACCAAGGCC
GCAGACCTCGGCCGCAGGCTGTCCAAGGCCTTCGATTCGCCGTAAGTTGA
CCCCTCCCCAATTTGTCTCACCGGTAAGGCATGAAAACCATGAGTACATC
CCCTCCCTTCCTCCTTCCCTTCACTTGTGTTGCGGGATTCAAATGAATAC
GGTACGGTATATTTGATGTACCGAGAGGAACAGAACTAGAAGATGACGCA
TGCAGCATTCGTCGGCGATCCGGTTCGGTGCAGGTCTGGGATCCCCTACT
CGGACGTGAACTTGAGATCGGGCCGCGCCTTCAACCCAAAATCGTCTCCG
GGCAGCTCGCTCTCGGAGGCCACGACTCTTCAGCTCGAGTTCAGGTAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15935:602..2149-

>mRNA_E-fasciculatus_F_contig15935.4065.1 ID=mRNA_E-fasciculatus_F_contig15935.4065.1|Name=mRNA_E-fasciculatus_F_contig15935.4065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15935:602..2149- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGATACACTACCCACGCCTGGGGGACGGACGAGCTCAACCCCTTGAC
GAGGCGAGGCAAGACGTCCTTCAGACTCGGCCTAACCATCCAGGGATACA
CTACCCACGCCTGGGGGACGGACGAGCTCAACCCCTTGACGAGGCGAGGC
AAGACGTCCTTCAGACTCGGCCTAACCATCGTCGACTCGATGGACACGCT
GTGGCTGGCCGGAGAGAGGGAGGAGTTCGCCCGGTGCCTGCATTGGGTCA
CCAACGTGATGGACCTGGACGTCGACCAGGTCGACTCGATGGACACGCTG
TGGCTGGCCGGAGAGAGGGAGGAGTTCGCCCGGTGCCTGCATTGGGTCAC
CAACGTGATGGACCTGGACGTCGACCAGAATGTGAACGTCTTCGAGACGA
CCATCCGGGTGCTCGGAGGACTGCTGGCGGCGTACCACCTGTCCGGCGAG
GAGGCCCTCCTGACCAAGGCCGCAGACCTCGGCCGCAGGCTGTCCAAGGC
CTTCGATTCGCCAATGTGAACGTCTTCGAGACGACCATCCGGGTGCTCGG
AGGACTGCTGGCGGCGTACCACCTGTCCGGCGAGGAGGCCCTCCTGACCA
AGGCCGCAGACCTCGGCCGCAGGCTGTCCAAGGCCTTCGATTCGCCGTCT
GGGATCCCCTACTCGGACGTGAACTTGAGATCGGGCCGCGCCTTCAACCC
AAAATCGTCTCCGGGCAGCTCGCTCTCGGAGGCCACGACTCTTCAGCTCG
AGTTCAGGTAGGTCTGGGATCCCCTACTCGGACGTGAACTTGAGATCGGG
CCGCGCCTTCAACCCAAAATCGTCTCCGGGCAGCTCGCTCTCGGAGGCCA
CGACTCTTCAGCTCGAGTTCAGGTAG
back to top