mRNA_E-fasciculatus_F_contig15931.4061.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15931.4061.1
Unique NamemRNA_E-fasciculatus_F_contig15931.4061.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15931.4061.1 vs. uniprot
Match: D7G5Q2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q2_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 1.260e-162
Identity = 332/409 (81.17%), Postives = 335/409 (81.91%), Query Frame = 1 
Query:    1 RKVWLRTEEYLKDALGSVVTDIEDMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRAREQSAATRLLALRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADEPPSSLSLASDSVTLPGSAGAGLGDAGSVAETADMWGEHSSSPSSSRVGGISDLPSPSVGGGAGGSPRSFKPRGSSASPAASPRAAATGGGDSA-KKDRLDLAAAARKAVAPVXXXXXXXXXPARDPVVMNKRLSAKQARPAGGAVGAPPPLVSRAKPXXXXXXXXXXGRGSSMTEGMAAGKPPXXXXXXXAPSVSSRSEGGSXXXXXXXXXXXXASLFSVPEAQTPAPPLPXXXXXXXXXXXXXXXXXXXXXXXX----VKQGECDIILFFFWLLWYAQSVSRYGESACESVG 1212
            R+VWLRTEEYLKDALGSVV DIEDMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRAREQSAATRLL LRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADEPPSSLSLASDS TLPGSA AGLGDAGSVAETADMWGEH+SSPSSSRVGGISDLPSPSVGG  GGSPRSFKP GSSASPAASPR AA GGGDSA KKDRLDLAAAARKAVAPV         PARDPVVMNKRLSAKQARPAGGAVGAPPPLVSRAKPXXXXXXXXXX RGSSM+                  SVSSR EGGS    XXXXXXXX                 XXXXXXXXXXXXXXXXXXXXXXXX    VKQGECD  L FF   W  QSVSRY E ACESVG
Sbjct:   52 REVWLRTEEYLKDALGSVVADIEDMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRAREQSAATRLLELRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADEPPSSLSLASDSGTLPGSAAAGLGDAGSVAETADMWGEHNSSPSSSRVGGISDLPSPSVGGDGGGSPRSFKPDGSSASPAASPREAAAGGGDSASKKDRLDLAAAARKAVAPVPVPTMAPPPPARDPVVMNKRLSAKQARPAGGAVGAPPPLVSRAKPXXXXXXXXXXXRGSSMS------------------SVSSRPEGGSKPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKQGECDDHLIFFGCCWCVQSVSRYDELACESVG 442
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BLAST of mRNA_E-fasciculatus_F_contig15931.4061.1 vs. uniprot
Match: A0A6H5JRA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA6_9PHAE)

HSP 1 Score: 432 bits (1112), Expect = 4.280e-146
Identity = 256/273 (93.77%), Postives = 259/273 (94.87%), Query Frame = 1 
Query:    1 RKVWLRTEEYLKDALGSVVTDIEDMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRAREQSAATRLLALRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADEPPSSLSLASDSVTLPGSAGAGLGDAGSVAETADMWGEHSSSPSSSRVGGISDLPSPSVGGGAGGSPRSFKPRGSSASPAASPRAAATGGGDSA-KKDRLDLAAAARKAVAPVXXXXXXXXXPARDPVVMNKRLSAKQARPAGGAVGAPPPLVSRAKP 816
            R+VWLRTEEYLKDALGSVVTDIE+MAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRARE SAATRLL LRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADEPPSSLSLASDS TLPGSA AGLGD GSVAETADMWGEH+SSPSSSRVGGISDLPSPSVGGG GGSPRSFKP GSSASPAASPR AA GGGD A KKDRL LAAAARKAVAPVXXXXXXXXXPARDPVVMNKRLS KQ RPAGGAVGAPPPLVSRAKP
Sbjct:   52 REVWLRTEEYLKDALGSVVTDIEEMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRARELSAATRLLDLRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADEPPSSLSLASDSATLPGSAAAGLGDTGSVAETADMWGEHNSSPSSSRVGGISDLPSPSVGGG-GGSPRSFKPDGSSASPAASPREAAAGGGDRASKKDRLGLAAAARKAVAPVXXXXXXXXXPARDPVVMNKRLSTKQPRPAGGAVGAPPPLVSRAKP 323
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15931.4061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5Q2_ECTSI1.260e-16281.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRA6_9PHAE4.280e-14693.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15931contigE-fasciculatus_F_contig15931:167..1790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1218
Cds size1218
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928062.4626958-CDS-E-fasciculatus_F_contig15931:166..2741622928062.4626958-CDS-E-fasciculatus_F_contig15931:166..274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15931 167..274 +
1695995807.4945467-CDS-E-fasciculatus_F_contig15931:166..2741695995807.4945467-CDS-E-fasciculatus_F_contig15931:166..274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15931 167..274 +
1622928062.473122-CDS-E-fasciculatus_F_contig15931:680..17901622928062.473122-CDS-E-fasciculatus_F_contig15931:680..1790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15931 681..1790 +
1695995807.5022864-CDS-E-fasciculatus_F_contig15931:680..17901695995807.5022864-CDS-E-fasciculatus_F_contig15931:680..1790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15931 681..1790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15931.4061.1prot_E-fasciculatus_F_contig15931.4061.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15931 167..1790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15931.4061.1

>prot_E-fasciculatus_F_contig15931.4061.1 ID=prot_E-fasciculatus_F_contig15931.4061.1|Name=mRNA_E-fasciculatus_F_contig15931.4061.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=406bp
RKVWLRTEEYLKDALGSVVTDIEDMAINLLTFVNAQAEAVEKVTSDVVIA
KTRLNRAREQSAATRLLALRRAAGETPARQKIVVLTGSERPTKCRPLPPR
RRISLKEKLGGIYADEPPSSLSLASDSVTLPGSAGAGLGDAGSVAETADM
WGEHSSSPSSSRVGGISDLPSPSVGGGAGGSPRSFKPRGSSASPAASPRA
AATGGGDSAKKDRLDLAAAARKAVAPVPVPAMAPPPPARDPVVMNKRLSA
KQARPAGGAVGAPPPLVSRAKPGAPPPLLSQAGRGSSMTEGMAAGKPPPP
PPPPPAPSVSSRSEGGSKPLPPPPPPQPSASLFSVPEAQTPAPPLPPPPP
PPKAPSRAASSPPPPPPPPPVKQGECDIILFFFWLLWYAQSVSRYGESAC
ESVGS*
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mRNA from alignment at E-fasciculatus_F_contig15931:167..1790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15931.4061.1 ID=mRNA_E-fasciculatus_F_contig15931.4061.1|Name=mRNA_E-fasciculatus_F_contig15931.4061.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15931:167..1790+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCAAGGTATGGTTGAGAACGGAGGAGTACCTCAAGGATGCCCTTGGATC
GGTCGTGACCGATATCGAGGACATGGCCATCAACCTCTTGACCTTCGTCA
ACGCACAGGTGATACATGTGGTAGATGCGAAACGGTCATTTTTTCTTTTG
GAGCTGTACTGCTGTTAAGGCTTGGTGTTTGGCGACGGGGGTGTCCTGTG
CCATGCTTGTCGAGCGTGGACCTTTGATCGGTCGCGTCAGACAGCGGTTC
TAGTGTTGTGGTAGACACCAGTGCTCGAGGTTTGGGCAGGGGGGGCTTGA
GAAGAGTCAGATGTAGTGTACGTGGCAGTAACCGAGTTGCCTGACGCGGC
ACCGCCGGGCAAGCGACAGGGCTGTTCCGAGCACTGTCTGACACCCGTAC
CGTTGAGGCAAGAACGTTTCTCCTGTCGAGCCCGGGAAAATGCACCACCG
ACCCCACACCGCCTCCGTCGCCACTTCAACCCCCTGCGTTATACGTACGT
CCTCTCGAGCGCAGGCCGAGGCGGTGGAGAAGGTAACGTCGGACGTTGTC
ATTGCCAAGACTCGACTCAACCGGGCCCGGGAGCAGAGCGCGGCGACACG
CCTCCTCGCCCTCCGAAGGGCCGCGGGGGAGACCCCGGCGCGGCAGAAGA
TCGTTGTGCTCACGGGGTCGGAGCGGCCGACGAAGTGCCGCCCGCTGCCC
CCACGACGCCGGATATCTCTCAAGGAGAAGCTGGGGGGCATCTACGCCGA
CGAGCCGCCGTCGTCGCTGTCTTTGGCTTCGGACTCGGTTACGCTGCCGG
GGAGCGCAGGCGCTGGGTTGGGGGACGCGGGCAGCGTGGCGGAAACGGCC
GACATGTGGGGGGAGCACAGCAGCAGCCCGTCCTCTTCGAGGGTGGGAGG
GATTTCAGACCTGCCCTCTCCGTCCGTTGGCGGCGGCGCTGGCGGGTCTC
CCAGGTCGTTTAAGCCCCGCGGCTCCTCGGCCTCTCCGGCGGCTTCGCCG
CGGGCAGCAGCGACCGGCGGCGGCGATAGCGCGAAAAAGGACCGCTTGGA
CCTAGCGGCCGCGGCTCGGAAGGCAGTCGCCCCGGTCCCGGTGCCGGCCA
TGGCGCCGCCGCCGCCCGCCCGCGACCCCGTCGTGATGAACAAGCGCCTG
TCGGCGAAGCAGGCACGGCCGGCCGGTGGTGCGGTCGGGGCCCCGCCGCC
GCTCGTGTCGCGGGCCAAGCCGGGCGCGCCGCCGCCGTTGCTTTCGCAGG
CGGGCCGCGGCTCCTCGATGACGGAGGGTATGGCGGCCGGGAAGCCGCCG
CCGCCGCCACCGCCGCCGCCGGCTCCTAGCGTGTCCTCTCGGTCTGAGGG
AGGGAGTAAGCCGCTCCCGCCGCCGCCCCCGCCGCAGCCGTCGGCGTCGC
TCTTCTCGGTACCCGAGGCGCAGACGCCCGCTCCTCCTCTTCCGCCCCCT
CCTCCGCCGCCGAAGGCCCCTTCGCGAGCGGCGTCGTCTCCACCGCCCCC
GCCGCCCCCTCCGCCAGTAAAACAAGGTGAGTGCGATATCATTCTTTTTT
TTTTTTGGTTGCTGTGGTACGCGCAGTCGGTGTCTCGGTACGGCGAGTCA
GCCTGCGAGTCAGTTGGATCGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15931:167..1790+

>mRNA_E-fasciculatus_F_contig15931.4061.1 ID=mRNA_E-fasciculatus_F_contig15931.4061.1|Name=mRNA_E-fasciculatus_F_contig15931.4061.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2436bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15931:167..1790+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCAAGGTATGGTTGAGAACGGAGGAGTACCTCAAGGATGCCCTTGGATC
GGTCGTGACCGATATCGAGGACATGGCCATCAACCTCTTGACCTTCGTCA
ACGCACAGCGCAAGGTATGGTTGAGAACGGAGGAGTACCTCAAGGATGCC
CTTGGATCGGTCGTGACCGATATCGAGGACATGGCCATCAACCTCTTGAC
CTTCGTCAACGCACAGGCCGAGGCGGTGGAGAAGGTAACGTCGGACGTTG
TCATTGCCAAGACTCGACTCAACCGGGCCCGGGAGCAGAGCGCGGCGACA
CGCCTCCTCGCCCTCCGAAGGGCCGCGGGGGAGACCCCGGCGCGGCAGAA
GATCGTTGTGCTCACGGGGTCGGAGCGGCCGACGAAGTGCCGCCCGCTGC
CCCCACGACGCCGGATATCTCTCAAGGAGAAGCTGGGGGGCATCTACGCC
GACGAGCCGCCGTCGTCGCTGTCTTTGGCTTCGGACTCGGTTACGCTGCC
GGGGAGCGCAGGCGCTGGGTTGGGGGACGCGGGCAGCGTGGCGGAAACGG
CCGACATGTGGGGGGAGCACAGCAGCAGCCCGTCCTCTTCGAGGGTGGGA
GGGATTTCAGACCTGCCCTCTCCGTCCGTTGGCGGCGGCGCTGGCGGGTC
TCCCAGGTCGTTTAAGCCCCGCGGCTCCTCGGCCTCTCCGGCGGCTTCGC
CGCGGGCAGCAGCGACCGGCGGCGGCGATAGCGCGAAAAAGGACCGCTTG
GACCTAGCGGCCGCGGCTCGGAAGGCAGTCGCCCCGGTCCCGGTGCCGGC
CATGGCGCCGCCGCCGCCCGCCCGCGACCCCGTCGTGATGAACAAGCGCC
TGTCGGCGAAGCAGGCACGGCCGGCCGGTGGTGCGGTCGGGGCCCCGCCG
CCGCTCGTGTCGCGGGCCAAGCCGGGCGCGCCGCCGCCGTTGCTTTCGCA
GGCGGGCCGCGGCTCCTCGATGACGGAGGGTATGGCGGCCGGGAAGCCGC
CGCCGCCGCCACCGCCGCCGCCGGCTCCTAGCGTGTCCTCTCGGTCTGAG
GGAGGGAGTAAGCCGCTCCCGCCGCCGCCCCCGCCGCAGCCGTCGGCGTC
GCTCTTCTCGGTACCCGAGGCGCAGACGCCCGCTCCTCCTCTTCCGCCCC
CTCCTCCGCCGCCGAAGGCCCCTTCGCGAGCGGCGTCGTCTCCACCGCCC
CCGCCGCCCCCTCCGCCAGTAAAACAAGGTGAGTGCGATATCATTCTTTT
TTTTTTTTGGTTGCTGTGGTACGCGCAGTCGGTGTCTCGGTACGGCGAGT
CAGCCTGCGAGTCAGTTGGATCGTAGGCCGAGGCGGTGGAGAAGGTAACG
TCGGACGTTGTCATTGCCAAGACTCGACTCAACCGGGCCCGGGAGCAGAG
CGCGGCGACACGCCTCCTCGCCCTCCGAAGGGCCGCGGGGGAGACCCCGG
CGCGGCAGAAGATCGTTGTGCTCACGGGGTCGGAGCGGCCGACGAAGTGC
CGCCCGCTGCCCCCACGACGCCGGATATCTCTCAAGGAGAAGCTGGGGGG
CATCTACGCCGACGAGCCGCCGTCGTCGCTGTCTTTGGCTTCGGACTCGG
TTACGCTGCCGGGGAGCGCAGGCGCTGGGTTGGGGGACGCGGGCAGCGTG
GCGGAAACGGCCGACATGTGGGGGGAGCACAGCAGCAGCCCGTCCTCTTC
GAGGGTGGGAGGGATTTCAGACCTGCCCTCTCCGTCCGTTGGCGGCGGCG
CTGGCGGGTCTCCCAGGTCGTTTAAGCCCCGCGGCTCCTCGGCCTCTCCG
GCGGCTTCGCCGCGGGCAGCAGCGACCGGCGGCGGCGATAGCGCGAAAAA
GGACCGCTTGGACCTAGCGGCCGCGGCTCGGAAGGCAGTCGCCCCGGTCC
CGGTGCCGGCCATGGCGCCGCCGCCGCCCGCCCGCGACCCCGTCGTGATG
AACAAGCGCCTGTCGGCGAAGCAGGCACGGCCGGCCGGTGGTGCGGTCGG
GGCCCCGCCGCCGCTCGTGTCGCGGGCCAAGCCGGGCGCGCCGCCGCCGT
TGCTTTCGCAGGCGGGCCGCGGCTCCTCGATGACGGAGGGTATGGCGGCC
GGGAAGCCGCCGCCGCCGCCACCGCCGCCGCCGGCTCCTAGCGTGTCCTC
TCGGTCTGAGGGAGGGAGTAAGCCGCTCCCGCCGCCGCCCCCGCCGCAGC
CGTCGGCGTCGCTCTTCTCGGTACCCGAGGCGCAGACGCCCGCTCCTCCT
CTTCCGCCCCCTCCTCCGCCGCCGAAGGCCCCTTCGCGAGCGGCGTCGTC
TCCACCGCCCCCGCCGCCCCCTCCGCCAGTAAAACAAGGTGAGTGCGATA
TCATTCTTTTTTTTTTTTGGTTGCTGTGGTACGCGCAGTCGGTGTCTCGG
TACGGCGAGTCAGCCTGCGAGTCAGTTGGATCGTAG
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