mRNA_E-fasciculatus_F_contig1593.4058.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1593.4058.1
Unique NamemRNA_E-fasciculatus_F_contig1593.4058.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1593.4058.1 vs. uniprot
Match: D7FKA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA1_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 3.270e-40
Identity = 99/181 (54.70%), Postives = 116/181 (64.09%), Query Frame = 2 
Query:  233 PPGATMDATVRWWRPRKSLRRPSRHPRPRWRKGPPMTSSAAYRQRLDAKGACDVPAVGLLSLSVKCAAIHAVISCNKRCPVGAERLRELMSPLLAMWKTPTCVIRSG---ASPDHQAEAFNLIGIHVAECRKALLPTKNACLVAP--SEVAATSEGLLERTATFATLSKLKREATGSSWRI 760
            P G TMDATV      + L  P      +  K   +      +  +DAK ACDVPAVGLLSLSVKCAAI+A +  NK CP GAERLREL+SPLLAMWKT   VIRS     +PDHQA+AFNLIG+H+AEC KALLP K A   A    EVA  S+GL +RTATFATL + K E T    ++
Sbjct:   64 PQGTTMDATVAVLASVQVLSAPKPQHMTKTEKRVAVDVVGRLKTAIDAKDACDVPAVGLLSLSVKCAAINAALRSNKCCPTGAERLRELLSPLLAMWKTAKFVIRSSKEWVTPDHQAKAFNLIGLHLAECHKALLPIKTAAGAAIFWPEVAP-SKGLQDRTATFATLCQGKGETTAKQQQL 243
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BLAST of mRNA_E-fasciculatus_F_contig1593.4058.1 vs. uniprot
Match: D7FK84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK84_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 3.430e-38
Identity = 186/455 (40.88%), Postives = 226/455 (49.67%), Query Frame = 3 
Query:   63 FCTSAVLSPRSSPTCRAAVRRSRAQPAVDSPAKSDLALPRRLVVETGHRFIAKRDVRPREPQWMLPCGGGVRASPFGAQAATHDQGGERDRQ*RHRPPTDSD*TRKVHVTFQRSAC*ASRSSAPPSTP*SAATNAARSVRSASGSSCPPCWRCGRPLRV*SGVGLLRTIRQRRSTSSEFM*PSAARHSFPPRMLALWLPARSPPQAKGCWKGRQRSPP*ANSSARPPEAXXXXXXXXXLLSPLVF-----EERPKEQSLH----CLSSSSPL-------RPYVERQRPRPHR----------GPVGRRXXXXXXXXXXXXXXXXXXPSPSTPSSFFSISSSRAFSGSENITVRQSSLSRWSKSANKKAMTLVSTPTLVSTRSSARKGGAWLGHQRKHTPAKVSRRLPYGDVLAPREGVGGEPYRSPTRRVNSRGTRLRGSGAIAGRKSQYVPGWL 1349
            FCTS VL  RSSPT  A VRRS  Q AVD+PA  D ALP R+V +TGHR IAK DVRPR     +     + AS     A       + +++      T     R       + AC          +   AA NAA  +RS     CP      R L +   + + +T +     S E++ P     +F   ++ L L          C+K  + +   A ++   PE            +         E   K+Q L       S+SSPL       +  V    P  HR          G      XXXXXXXXXXXXXXXXX    TPSSFFSISSS AFSGSENITVRQSSLSRW+K ANK+A TLVST T V+ RSS+R+G   LG QRKH PAKVS        ++P  GV   PYRSPTRR N RGT LRGSGAIAGRK+ +  G L
Sbjct:    7 FCTSPVLPSRSSPTSSAVVRRSSVQQAVDTPATPDQALPPRVVNDTGHRSIAKHDVRPRGT--TMDATDAILASAQAVSAPKPQHMTKAEKR-----VTVIIVGRLKTAIDAKDACDVPAVGLLTLSVKCAAINAA--LRS--NKCCPAGAERLREL-LSPLLAMWKTAKFVIRGSKEWVTPDHQAEAF--NLIGLHLAE--------CYKALKPTKTAAGAAIFWPEVAPSKGLQDRTATFAALCQGKGETTAKQQQLEGQLASSSASSPLSSPDKSGKSKVFFAYPCHHRLGSTSSSTGSGRTVAPSXXXXXXXXXXXXXXXXXXXXXTPSSFFSISSSHAFSGSENITVRQSSLSRWTKIANKEASTLVSTSTSVTIRSSSREGVVSLGRQRKHAPAKVS--------VSP--GVMFVPYRSPTRRANPRGTSLRGSGAIAGRKTSFDEGGL 429
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BLAST of mRNA_E-fasciculatus_F_contig1593.4058.1 vs. uniprot
Match: D8LM82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM82_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.080e-5
Identity = 47/124 (37.90%), Postives = 59/124 (47.58%), Query Frame = 3 
Query:  963 PSPSTPSSFFSISSSRAFSGSENITVRQSSLSRWSKSANKKAMTLVSTPTLVSTRSSARKGGAWLGHQRKHTPAKVSRRLPYGDVLAPREGVGGEPYRSPTRRVNSRGTRLRGSGAIAGRKSQY 1334
            P  S+ SSFFS SS+  F+GSENIT                                  +     G Q+KH P+KV         ++P  GV   PYRSPT R N RG+ LRGSGAIAGRK+++
Sbjct:  290 PLSSSLSSFFSASSAHTFTGSENIT----------------------------------EAPPCKGRQKKHAPSKVP--------VSP--GVAFVPYRSPTSRTNPRGSSLRGSGAIAGRKTRF 369
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1593.4058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKA1_ECTSI3.270e-4054.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK84_ECTSI3.430e-3840.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LM82_ECTSI1.080e-537.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1593contigE-fasciculatus_F_contig1593:3270..6756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_003310.1
Exons5
Model size1349
Cds size375
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928062.156093-UTR-E-fasciculatus_F_contig1593:3269..34251622928062.156093-UTR-E-fasciculatus_F_contig1593:3269..3425Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1593 3270..3425 -
1695995807.318157-UTR-E-fasciculatus_F_contig1593:3269..34251695995807.318157-UTR-E-fasciculatus_F_contig1593:3269..3425Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1593 3270..3425 -
1622928062.1703985-UTR-E-fasciculatus_F_contig1593:4037..45661622928062.1703985-UTR-E-fasciculatus_F_contig1593:4037..4566Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1593 4038..4566 -
1695995807.3306875-UTR-E-fasciculatus_F_contig1593:4037..45661695995807.3306875-UTR-E-fasciculatus_F_contig1593:4037..4566Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1593 4038..4566 -
1622928062.1894283-UTR-E-fasciculatus_F_contig1593:5408..55261622928062.1894283-UTR-E-fasciculatus_F_contig1593:5408..5526Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1593 5409..5526 -
1695995807.3429744-UTR-E-fasciculatus_F_contig1593:5408..55261695995807.3429744-UTR-E-fasciculatus_F_contig1593:5408..5526Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1593 5409..5526 -
1622928062.2565663-UTR-E-fasciculatus_F_contig1593:5980..61361622928062.2565663-UTR-E-fasciculatus_F_contig1593:5980..6136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1593 5981..6136 -
1695995807.355597-UTR-E-fasciculatus_F_contig1593:5980..61361695995807.355597-UTR-E-fasciculatus_F_contig1593:5980..6136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1593 5981..6136 -
1622928062.2968693-UTR-E-fasciculatus_F_contig1593:6741..67561622928062.2968693-UTR-E-fasciculatus_F_contig1593:6741..6756Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1593 6742..6756 -
1695995807.3950396-UTR-E-fasciculatus_F_contig1593:6741..67561695995807.3950396-UTR-E-fasciculatus_F_contig1593:6741..6756Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1593 6742..6756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928062.2692096-CDS-E-fasciculatus_F_contig1593:6136..63831622928062.2692096-CDS-E-fasciculatus_F_contig1593:6136..6383Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1593 6137..6383 -
1695995807.3694446-CDS-E-fasciculatus_F_contig1593:6136..63831695995807.3694446-CDS-E-fasciculatus_F_contig1593:6136..6383Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1593 6137..6383 -
1622928062.28335-CDS-E-fasciculatus_F_contig1593:6613..67411622928062.28335-CDS-E-fasciculatus_F_contig1593:6613..6741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1593 6614..6741 -
1695995807.3824792-CDS-E-fasciculatus_F_contig1593:6613..67411695995807.3824792-CDS-E-fasciculatus_F_contig1593:6613..6741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1593 6614..6741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1593.4058.1prot_E-fasciculatus_F_contig1593.4058.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1593 6137..6741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1593.4058.1

>prot_E-fasciculatus_F_contig1593.4058.1 ID=prot_E-fasciculatus_F_contig1593.4058.1|Name=mRNA_E-fasciculatus_F_contig1593.4058.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=125bp
MIGNDFVRAFPFLYTVSAPLRCCRQDRHRRVERRSVDHGHNQRWTALRSP
TWRCRAASSSRQAIVLSPSVMCAPGSHNGCYRAVVASAQVPSAPKPPPTT
KVEKGTANDVIGRLQTAIRRERCM*
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mRNA from alignment at E-fasciculatus_F_contig1593:3270..6756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1593.4058.1 ID=mRNA_E-fasciculatus_F_contig1593.4058.1|Name=mRNA_E-fasciculatus_F_contig1593.4058.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3487bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1593:3270..6756- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCTCGGCGACGCCATGATAGGGAACGACTTTGTCAGAGCGTTCCCCTT
CCTGTACACGGTTTCTGCACCTCTGCGGTGCTGTCGCCAAGATCGTCACC
GACGTGTCGAGCGGCGGTCCGTCGATCACGGGCACAACCAGCGGTGAGAG
GGATATCTTGTTGTATGTAGAAAGGGCATTGTACCACATAGAGACTACCC
ATTCGAGACAATTTTCGCATGCTCCGGAGTACTAATTTGGATGGGTAATC
TGTACGGTCGCAAGGAGTGGAAGGAGAACAGCGAGAACGAGGAGGGGGGA
GAAGACGAAGACGGTGAAGACGGTGGTTATTAACATCTAAATGATGCTTT
CGAAACAAACGACTTTCCCCCAGGTGGACAGCCCTGCGAAGTCCGACCTG
GCGCTGCCGCGCCGCCTCGTCGTCGAGACAGGCCATCGTTTTATCGCCAA
GCGTGATGTGCGCCCCCGGGAGCCACAATGGATGCTACCGTGCGGTGGTG
GCGTCCGCGCAAGTCCCTTCGGCGCCCAAGCCGCCACCCACGACCAAGGT
GGAGAAAGGGACCGCCAATGACGTCATCGGCCGCCTACAGACAGCGATTA
GACGCGAAAGGTGCATGTGACGTTCCAGCGGTCGGCCTGCTGAGCCTCTC
GGTCAAGTGCGCCGCCATCCACGCCGTGATCAGCTGCAACAAACGCTGCC
CGGTCGGTGCGGAGCGCCTCCGGGAGCTCATGTCCCCCCTGTTGGCGATG
TGGAAGACCCCTACGTGTGTGATCCGGTGAGTCGTCCGTTGGGTATGTTG
GGTTGATCGGCCCTGGCGCCCTTTGAACGGACAGTTCTGCTCTGTACTTT
TATAGCTAGAGGACGTGTACTGTGTGAAGAAAGTGATGAATGGTGGACCA
GAACGGCGTCCCGTCTCTCACATTGCTACTTGACTGATGATGGCACACGC
AAAGCGCACTTGCTTGGCCAACCCGTCCAATTTTTGTTTCGATGCTCATG
CGAGCAATAGAAATGTTGCGAGTTCTAGTCCATACAGCGGAGTGGTAGTA
TATACAGAGAAATGTTGGTCGTTTAGGATAGCATGAGATGCTGCAGTGCT
CCCTCTCACCCTTCAAGAGCTTGACCCTATATTTGCATCGGAGGCAACCC
GTCGACCCACATGTTGCATTGTTACCAATTCCATGAACCCACGCTACGGC
TTTTCGTTTATCCCCTCCGGGTGACGCCAGGAGTGGGGCTTCTCCGGACC
ATCAGGCAGAGGCGTTCAACCTCATCGGAATTCATGTAGCCGAGTGCCGC
AAGGCACTCCTTCCCACCAAGAATGCTTGCCTTGTGGCTCCCAGCGAGGT
GGAGACCGATGAGGGTAAACGCCTCTTCCTGGTGGTCGGGGAAAACCCAT
TCCTTGGAGTTCCTGGTGTCGCCCGGAGGGGATACACGGATAGCAGTGGA
GTTCTCCGGACCATCAGGCAGAGGCGTTCGACTCAGTCGGACTCCACCTC
ACACCCATCAAGAACGCGGTGAGTGCAGACTGGGCGCATCCCTAGGGCGC
ATTCAGAGATTAAAAAGACACTTTCCTACCCCACGTGCAGATTCGCCATG
CACGCGAAGGCACGATTTTTGTCTGTTCCCCACATGATGTCGGTTTTCAA
CTGTACGCATGGTCTGCTTCGACCGCAAGTCCCCCTCCCGTATGGATCGT
CTTCCGTCATTCCTCCTCTTTAATATCGACCGAGCAGTGGGGACAATATT
GAGAGTTCCCTGGGTGCAAGGTAAATATTCTTCGAAAAATACACATCCCC
GCGACTCACTTCAGTTGTTGTGCAGCTTATGCCCCCCAGTTGTTTCAGTT
CCCGCCGATATTCGCGAACACTTCCCCGTATCATCAACAGATGTGTTTGG
CGTCTTCGTTCGGCACTGCTGTGAATGGGAAACGGTGGGTAAAAGGCAGT
GAGTGGTGGTGCAAGTGGACGTACACGCTGCCCTGTTGTTGGTTGTGGTG
ATTTCTTAACGCTCGGAATCAAACTTTCCGTCGTGGCGCATCCTGCACCG
GGGAGCACCATCATCCTGTTGCGGTTGGTTTCTACGATATACGTGGGGTG
AATCTCTTCTTTATCTCAGGCCGGACACCCATCTCTTTAGTTTGTCCCCC
GTCGCCCTTCCAGGCTAGCGCGGCCATCTTCTGACCCGAGGTCGCCGCCA
CAAGCGAAGGGTTGTTGGAAAGGACGGCAACGTTCGCCACCCTGAGCAAA
CTCAAGCGCGAGGCCACCGGAAGCAGCTGGAGGATCAGCTAGCCTCCTTC
TCCTCCTCTCCCCCCTCGTCTTCGAGGAGAGGCCGAAAGAGCAAAGCCTT
CACTGCCTGTCCTCCTCCTCACCGCTTCGGCCGTACGTCGAGCGGCAGCG
GCCGCGACCGCACCGTGGCCCCGTCGGACGACGACGACGACGACAACGAC
GCCGCCGGCACACTTCCTTTCCGCCGTCCTCTTCTTCACCGTCGCCATCT
ACGCCCTCTTCGTTCTTCTCCATCTCCTCCTCCCGCGCCTTCTCTGGGAG
CGAGAACATTACCGTTAGGCAGTCGTCGCTGTCAAGGTGGAGCAAGAGCG
CCAACAAGAAGGCAATGACACTGGTTTCGACACCGACGTTGGTCTCCACC
CGCTCGTCTGCTCGAAAGGGGGGGGCGTGGCTGGGCCACCAGCGGAAGCA
CACCCCGGCCAAGGTCTCCGTCTAACGCTATCCCCGGATTACTACCCGAG
CACACCCCGGCCAAGGTCTCCGTGTATCGCTATCCCCGCACTACTACCGG
GTAGTAGCGCGGGGATAGCGATACACGGAGACCTTGGCCGGGTTGTGCTC
CCTCTCGGTAATTATCCGGACATAGCGTTAGAGGGAGACCTTGGCCGGGG
TGTGCTTCGTCTGGTGGCGCAGCCACGGCTCCTTTCGAGAAGACGAGCGG
GTGGTGACCGACGTCAGCGTCGGGGCCAGTGTCTCCTCCTCCTTCTTGGC
GCTCTTGCCCCACCTTGACAGCGACGACAGACTAACGGTTACGTTGTTGC
TCCCAGAGAAGGCGTGGGAGGAGAAGATAGAGAAGAGGGAAGGCGGTGTA
GATGGCGACGGTGAAAAAGAGGACGGCGAAAGAGTGCCGGCGTCGTCGTC
GTCGTCGTACCGGGGTAGTAGTTCGGAGATAGGGATAGACGGAGACCTTG
CCCGGGGTGTGTTTCTGCTGGCGGCCCAGCCACGCCCCCCTCTTTCGAGC
AGACGAGCGGGTGGAGGCCAACGTCGGTGTCGAAACCAGTGTCATTGCCT
TCTTGTTGGCGCTCTTGATCCACCTTGACAGCGACGACTGCCTTACGGTG
ATGTTCTCGCTCCCAGAGAAGGCGTGGGAGGAGAGCCCTACCGCAGCCCT
ACCCGCCGCGTTAACTCAAGGGGAACAAGGCTGCGCGGAAGCGGCGCGAT
TGCCGGTCGCAAGAGCCAATATGTACCAGGGTGGCTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1593:3270..6756-

>mRNA_E-fasciculatus_F_contig1593.4058.1 ID=mRNA_E-fasciculatus_F_contig1593.4058.1|Name=mRNA_E-fasciculatus_F_contig1593.4058.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=750bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1593:3270..6756- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATAGGGAACGACTTTGTCAGAGCGTTCCCCTTCCTGTACACGGTTTC
TGCACCTCTGCGGTGCTGTCGCCAAGATCGTCACCGACGTGTCGAGCGGC
GGTCCGTCGATCACGGGCACAACCAGCGATGATAGGGAACGACTTTGTCA
GAGCGTTCCCCTTCCTGTACACGGTTTCTGCACCTCTGCGGTGCTGTCGC
CAAGATCGTCACCGACGTGTCGAGCGGCGGTCCGTCGATCACGGGCACAA
CCAGCGGTGGACAGCCCTGCGAAGTCCGACCTGGCGCTGCCGCGCCGCCT
CGTCGTCGAGACAGGCCATCGTTTTATCGCCAAGCGTGATGTGCGCCCCC
GGGAGCCACAATGGATGCTACCGTGCGGTGGTGGCGTCCGCGCAAGTCCC
TTCGGCGCCCAAGCCGCCACCCACGACCAAGGTGGAGAAAGGGACCGCCA
ATGACGTCATCGGCCGCCTACAGACAGCGATTAGACGCGAAAGGTGCATG
TGAGTGGACAGCCCTGCGAAGTCCGACCTGGCGCTGCCGCGCCGCCTCGT
CGTCGAGACAGGCCATCGTTTTATCGCCAAGCGTGATGTGCGCCCCCGGG
AGCCACAATGGATGCTACCGTGCGGTGGTGGCGTCCGCGCAAGTCCCTTC
GGCGCCCAAGCCGCCACCCACGACCAAGGTGGAGAAAGGGACCGCCAATG
ACGTCATCGGCCGCCTACAGACAGCGATTAGACGCGAAAGGTGCATGTGA
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