mRNA_E-fasciculatus_F_contig15923.4057.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 1.970e-18 Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1
Query: 1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 123
PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV
Sbjct: 539 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 579
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.970e-18 Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1
Query: 1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 123
PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV
Sbjct: 722 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 762
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A836CA55_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA55_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.190e-14 Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1
Query: 1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEK 117
PVGHVLVFSFIQR+FP+FFPST+T+RRQNLLKMY EVEK
Sbjct: 231 PVGHVLVFSFIQRYFPDFFPSTFTERRQNLLKMYEEVEK 269
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S1NU99_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NU99_9EUGL) HSP 1 Score: 74.3 bits (181), Expect = 2.280e-14 Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1
Query: 1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKK 120
P+GHVLVFSFIQRFFP FFPS+++DRRQNLLKMY E+EKK
Sbjct: 692 PIGHVLVFSFIQRFFPEFFPSSFSDRRQNLLKMYEEIEKK 731
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S3UWA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA8_HETAK) HSP 1 Score: 69.3 bits (168), Expect = 1.230e-12 Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query: 1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKK 120
PVGHVL+FSFIQRFFP+FFP+ YTD+RQNLLK+Y +E+K
Sbjct: 316 PVGHVLIFSFIQRFFPDFFPTPYTDQRQNLLKLYETIEEK 355
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S0U8H3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U8H3_HEMAN) HSP 1 Score: 68.6 bits (166), Expect = 2.460e-12 Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1
Query: 1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVE 114
PVGHVLVFSFIQRFFP+FFPS YTDRRQ LL+MY VE
Sbjct: 467 PVGHVLVFSFIQRFFPDFFPSPYTDRRQKLLRMYQAVE 504
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S2XTH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTH3_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 2.860e-12 Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1
Query: 1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVE 114
PVGHVLVFSFIQRFFP+FFPS++TDRRQNL +MY +E
Sbjct: 268 PVGHVLVFSFIQRFFPDFFPSSFTDRRQNLARMYESIE 305
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S1R4U4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R4U4_ALECA) HSP 1 Score: 64.7 bits (156), Expect = 3.060e-12 Identity = 26/37 (70.27%), Postives = 36/37 (97.30%), Query Frame = 1
Query: 1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEV 111
P+GHVLVFSFIQ+FFP+FFPST+T+RRQN++K+Y ++
Sbjct: 70 PIGHVLVFSFIQKFFPDFFPSTFTERRQNVVKIYQDI 106
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A4D9D1V1_9STRA (LETM1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V1_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.370e-12 Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query: 1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKK 120
P+GHVLVFS IQR FP+FFPST+T+RRQNL KMY E++KK
Sbjct: 675 PIGHVLVFSLIQRIFPDFFPSTFTERRQNLSKMYDEIDKK 714
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S2X822_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2X822_9EUKA) HSP 1 Score: 65.9 bits (159), Expect = 3.580e-12 Identity = 28/41 (68.29%), Postives = 38/41 (92.68%), Query Frame = 1
Query: 1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 123
PVGHVLVFS IQ+FFP+F+PS YT+RRQNL+++Y E+E+K+
Sbjct: 133 PVGHVLVFSAIQKFFPDFYPSPYTERRQNLVRLYQEIEQKL 173 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15923.4057.1 >prot_E-fasciculatus_F_contig15923.4057.1 ID=prot_E-fasciculatus_F_contig15923.4057.1|Name=mRNA_E-fasciculatus_F_contig15923.4057.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=45bp PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKVQQY*back to top mRNA from alignment at E-fasciculatus_F_contig15923:45..179+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15923.4057.1 ID=mRNA_E-fasciculatus_F_contig15923.4057.1|Name=mRNA_E-fasciculatus_F_contig15923.4057.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=135bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15923:45..179+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15923:45..179+ >mRNA_E-fasciculatus_F_contig15923.4057.1 ID=mRNA_E-fasciculatus_F_contig15923.4057.1|Name=mRNA_E-fasciculatus_F_contig15923.4057.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=270bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15923:45..179+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |