|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig1592.4055.1 vs. uniprot
Match: D7G199_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G199_ECTSI) HSP 1 Score: 500 bits (1288), Expect = 3.340e-170 Identity = 329/373 (88.20%), Postives = 335/373 (89.81%), Query Frame = 3
Query: 48 MHNPLIAVLCWYGLPVGLAFAPPPLVRARVGSSRRNTASACNLFSPDHGDHDGPIVRAPSKAAKAIAAGKEVSGKPSGGWGSWEKVVSQRVEQDEVLERFTSEGGVPEAAKLAVRTANSGDMPSISRLCIDTFRGPFQWFELPVQLFQEFAFFGQIKGRLGRVTRNEIKHGMVIAQDTTSRRVVGFLEIGMLPKPSSSEESALAGESLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIKREKQPEVAYLANVVVDRGQRRRGIGRTMVSSAIEIVRELWPAEENIYVSVEQARAGNDIALALYQGMGFELAALEDEMMARSRRRPPRVYLSKPLH 1166
MH PLIAVLCWYGLPVGLAFAPPPLVRARVGS +A AC+LFSPDHGDHDGPIVRAPSKAAKA A GKEVSGKPSGGWGSWEKVVSQRVEQDEVL+RFTS GGVPEAAKLAVRTANSGDMPSISRLCID FRGPFQWFELP+QLFQEFAFFGQIKGRLGRVTRNEIKH MVIAQDTTSRRVVGFLEIGMLPKPSSSEESALAGESLTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AIKREKQP+VAYLANVVVDRGQRRRGIGRTMV+SAIEI GNDIALALYQGMGFELAALEDEMMARSRRRPPRVYLSKPLH
Sbjct: 1 MHYPLIAVLCWYGLPVGLAFAPPPLVRARVGSRNTASAVACHLFSPDHGDHDGPIVRAPSKAAKAAAQGKEVSGKPSGGWGSWEKVVSQRVEQDEVLDRFTSAGGVPEAAKLAVRTANSGDMPSISRLCIDIFRGPFQWFELPIQLFQEFAFFGQIKGRLGRVTRNEIKHSMVIAQDTTSRRVVGFLEIGMLPKPSSSEESALAGESLTAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT---AIKREKQPDVAYLANVVVDRGQRRRGIGRTMVNSAIEI--------------------GNDIALALYQGMGFELAALEDEMMARSRRRPPRVYLSKPLH 350
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | Secreted acetyltransferase (GNAT) domain protein |
| Ec32 ortholog | Ec-12_005280.1 |
| Exons | 4 |
| Model size | 2134 |
| Cds size | 1125 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1592.4055.1 >prot_E-fasciculatus_F_contig1592.4055.1 ID=prot_E-fasciculatus_F_contig1592.4055.1|Name=mRNA_E-fasciculatus_F_contig1592.4055.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=375bp
MHNPLIAVLCWYGLPVGLAFAPPPLVRARVGSSRRNTASACNLFSPDHGD
HDGPIVRAPSKAAKAIAAGKEVSGKPSGGWGSWEKVVSQRVEQDEVLERF
TSEGGVPEAAKLAVRTANSGDMPSISRLCIDTFRGPFQWFELPVQLFQEF
AFFGQIKGRLGRVTRNEIKHGMVIAQDTTSRRVVGFLEIGMLPKPSSSEE
SALAGESLTAARAAAALAAAAEASGAKKKPDSERSSSTPPRAGETTTEDE
AGGRPSEEEGGGRREGGREESSTTAIKREKQPEVAYLANVVVDRGQRRRG
IGRTMVSSAIEIVRELWPAEENIYVSVEQARAGNDIALALYQGMGFELAA
LEDEMMARSRRRPPRVYLSKPLHE* back to topmRNA from alignment at E-fasciculatus_F_contig1592:11220..14801+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1592.4055.1 ID=mRNA_E-fasciculatus_F_contig1592.4055.1|Name=mRNA_E-fasciculatus_F_contig1592.4055.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1592:11220..14801+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCAGACAGAGCGGCCCACACGACCTTCCAGCTGCGGCACTCGAAGATG
CACAACCCGCTGATAGCCGTGCTCTGCTGGTACGGTTTGCCTGTCGGCCT
GGCTTTCGCCCCGCCGCCGCTGGTGCGTGCTCGTGTCGGCAGCAGCAGAA
GAAACACCGCATCGGCATGTAACCTTTTCAGCCCAGACCACGGGGACCAT
GACGGCCCGATAGTAAGAGCACCTTCGAAGGCAGCGAAGGCAATCGCGGC
GGGCAAGGAGGTCTCCGGGAAACCGTCAGGCGGGTGGGGCTCTTGGGAGA
AGGTCGTCTCCCAGCGGGTCGAACAGGACGAGGTGCTGGAGAGGTTTACC
TCGGAGGGGGGCGTTCCGGAAGCTGCAAAGCTCGCTGTTAGGACAGCGAA
CTCGGGGGACATGCCGAGTATATCGAGGTGAGCGAGCATTGCTGTTGCGG
GTGCACGAGACCTTGCTGCCTGTGATCGAGCTGAACGCGTGCTGAGATGC
CGAGATGTATCACCGCTGTTCACGTTTGTTGTCATTTTGAAGTGAACAGA
CGCAAAAGGTGTGCAGTGGCATGCATGATCAGTACCCCCCCCTCTCCCGC
ACGCCTCGTGTTGCGCAGAATTTAGGAAAAATAAATACAAGCGCAGAAAG
ACTATGTTTCTACCCGTTCGAGATCTACACAGCAGTCAGTACATGTGTTG
ACTGGAACGGATTGCAGAGCGACGAGCACAAATTGCCAAGAGTAATATCA
TGGGTGTGCATACTGCAAAGTGTGCATACTGCAATCAAACACTTGACGGT
TGCCTACTGGATATATATGCAGCACAGCCCGTATCCAAAGCCTCTCTTGA
TCAGAACTTTTAGGTTGGAGGTTTCTGGGTTTATCTGTCCTCGCGCCTAA
AGCCCTTTTGATCGGACCCGTCGCACACCCAGGATTCTCATTCCAATGTT
TTGGTTGTTTTTCGCGCCAGACTATGCATTGACACATTTCGAGGACCGTT
CCAGTGGTTCGAGCTTCCCGTGCAGCTATTCCAGGTATGAATTCATGTAG
AGTTGTTTGAGCTACACGTAAAGTGCTGGTGCTGTTCACGTCCCAAAAGA
CAGCAGTGGCCCACCAGGGCTCATCCTTCAGTTGGCAAGTCATGAGTCTT
TCACGCGTTTTGACCCTGTTGAATGTTGTACTCTGACTGGCCCATGTTTG
CTCTCTGTGGGCACCTTGGAACTCTCCTTGCCTGCTGTTGTTTTGATAGC
ATGACGCGCAGCAGCAACTCGTACTACCGCTTCTACTGGGGTGAGAATTG
CTCGCACGCCTGGCCATGTACACGGAGTTTTAGCAGCTGTTCAGCCCCCC
TTGTGGCCATGGTTGGCACACAGGAAATGCCGCCCGCCGGCGGCGTTTGA
CCCTGCCCCGCCATATCGCACTACATATCTCCTCTTTCATCTCAATACCA
TGGCTGTGAGGAATCATGAGGAGATGGTGCTGCCTCAGCGGTGCCCCTAG
GATTTTGTTCAGCATTCCCCAATAGGACGAAGACCGCGACCACGACCACG
GACGCCGGGAAGTACCAACCCATTTTCAATTCTGCTCGTTGGGCCAAATT
TGATTGCAACATGTGAAGGATCGGCATTCGCCGCATCTCCTCGCGCGAAC
CTCCTCCTTCTCCGCCCCCAAACAGGAGTTCGCCTTCTTCGGGCAGATCA
AGGGCCGCCTGGGGCGCGTGACCCGCAACGAGATCAAGCACGGGATGGTG
ATCGCCCAGGACACGACCAGCCGCAGGGTCGTGGGTTTCCTCGAGATCGG
GATGCTCCCCAAGCCCAGCTCCTCGGAGGAGAGCGCCCTCGCAGGGGAGA
GCCTGACGGCCGCCAGGGCGGCGGCCGCGCTGGCGGCGGCGGCGGAAGCT
TCGGGCGCGAAAAAGAAGCCAGACAGCGAGCGTTCTTCGTCGACACCGCC
GCGGGCGGGTGAAACGACTACCGAGGATGAAGCGGGGGGGAGACCGAGCG
AGGAGGAGGGTGGGGGGCGGAGAGAAGGGGGGCGTGAAGAGAGCAGCACC
ACTGCCATCAAGAGGGAGAAGCAGCCGGAGGTGGCCTACCTGGCCAACGT
GGTGGTCGACAGAGGGCAGCGGCGGAGGGGGATCGGCCGCACGATGGTCA
GCTCGGCCATCGAGATCGTGAGGGAGCTGTGGCCGGCGGAGGAGAACATA
TACGTGTCCGTTGAGCAGGCAAGAGCCGTCTTGAGAGGGGAGGAGGGGGG
CGAAACCGCAGCCGTACCCCGTTCGGTTTTAAAGCAGTGACCACGCCACT
GTATTAGTACAGTCGTCGTCGTGTTGGGGATTCAGATGTTTCGCGTGGCA
CATCGCTGAAGAGTTGAAAGTGTCGAGCCCATTTTCGAGCCCGAACCCGC
CGAAATCTCGGTTTTTGTACGCGTCTAGCTGTTCGTCCACGCTAATCGCT
CGCGTCTCTCGTGCCGCGGTGCTTTTTCTCGTGGTTTGTAGGGCAACGAC
ATTGCGCTAGCTCTGTACCAAGGGATGGGCTTCGAGTTGGCGGCGCTGGA
GGACGAGATGATGGCGAGAAGCCGAAGACGCCCACCCCGGGTGTACCTCT
CGAAGCCGCTCCACGAGTAGTAGTGTTGTGGGAGAGAATAGTGAAAACTT
GAGATAGGAGGTATTGCTGCAGCTATGAATCGAGCAATCACGTGTAAGCG
GGAGCAAGGCGATCTTGATGCGATGGTGACAGCACTGTTATCGGCCGAGT
AGGCTTTGAACCACCTTGCCTTGCCTTTGTACATAAACTAGAAGCCAGAG
AAGAGGTATCTCGCTTTAGATGCGTTCATGAAGACGTACATTTTTTCACT
CAAGGTAGCCTATTTCGCATCGATGACTTTTACTTCGTGGAGTTTGGTGC
TCGAGACCAGGAGTGCGCGGAGGGAGAAAATGTAGAAATCCGCCTACATA
AACTAGATACCAGGGAGAAATAGCTTGTTAGGAGGCGTTATCTTTCGTCG
TCTCGTAGTCACGTTCGTCGGGCGAGCGTTTCGCGACAAGCACGGAAACA
CGTCTCGCAATTTTGCGTCTATGATGCCCTTTCCCCAGAAACCGTGTGCG
CCGGAACTAGACAAGAGTACGAATTGTGGGACGCGCACCGGGGGGGCTTT
TGATCACCAGCCGATTGGAACTAATGTGGAGAGCGCTGGCGAAAAGCTGG
GCTCTCTAAGCTGACAGCAACACCGATTTCTCGTGTACGAGAGTTGCGAA
CGAGTACATGAGATGGAGAGTAGCCTAGAGTAGAGAGACAGGGGCTAGAG
GAGAGACACAGGGCGAAGTCATTGTCGAGCCACTCACATCTGCAGCTTTT
GTAACAAACGGGTACGCGGGCCTCGTTTGTCTGGGCTACGAGCTGGCCGT
ACTATCGGCCGCCCGAGGAAGTGGTCGAAACAAGCCGGCAGGCTGGGTGA
AAAGCGGATTGGCTAAGCAGGTGTGCAGACAGCGGCGGCATACTTGCGGC
GTGAAGTCTTGTTACTTTCACACACGGCGAAAAGAAAATAAAAACTCTTG
TGTGGAAAACGCTCCTGTCACGTCCGCACATG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1592:11220..14801+ >mRNA_E-fasciculatus_F_contig1592.4055.1 ID=mRNA_E-fasciculatus_F_contig1592.4055.1|Name=mRNA_E-fasciculatus_F_contig1592.4055.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2250bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1592:11220..14801+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACAACCCGCTGATAGCCGTGCTCTGCTGGTACGGTTTGCCTGTCGG
CCTGGCTTTCGCCCCGCCGCCGCTGGTGCGTGCTCGTGTCGGCAGCAGCA
GAAGAAACACCGCATCGGCATGTAACCTTTTCAGCCCAGACCACGGGGAC
CATGACGGCCCGATAGTAAGAGCACCTTCGAAGGCAGCGAAGGCAATCGC
GGCGGGCAAGGAGGTCTCCGGGAAACCGTCAGGCGGGTGGGGCTCTTGGG
AGAAGGTCGTCTCCCAGCGGGTCGAACAGGACGAGGTGCTGGAGAGGTTT
ACCTCGGAGGGGGGCGTTCCGGAAGCTGCAAAGCTCGCTGTTAGGACAGC
GAACTCGGGGGACATGCCGAGTATATCGAGATGCACAACCCGCTGATAGC
CGTGCTCTGCTGGTACGGTTTGCCTGTCGGCCTGGCTTTCGCCCCGCCGC
CGCTGGTGCGTGCTCGTGTCGGCAGCAGCAGAAGAAACACCGCATCGGCA
TGTAACCTTTTCAGCCCAGACCACGGGGACCATGACGGCCCGATAGTAAG
AGCACCTTCGAAGGCAGCGAAGGCAATCGCGGCGGGCAAGGAGGTCTCCG
GGAAACCGTCAGGCGGGTGGGGCTCTTGGGAGAAGGTCGTCTCCCAGCGG
GTCGAACAGGACGAGGTGCTGGAGAGGTTTACCTCGGAGGGGGGCGTTCC
GGAAGCTGCAAAGCTCGCTGTTAGGACAGCGAACTCGGGGGACATGCCGA
GTATATCGAGACTATGCATTGACACATTTCGAGGACCGTTCCAGTGGTTC
GAGCTTCCCGTGCAGCTATTCCAGACTATGCATTGACACATTTCGAGGAC
CGTTCCAGTGGTTCGAGCTTCCCGTGCAGCTATTCCAGGAGTTCGCCTTC
TTCGGGCAGATCAAGGGCCGCCTGGGGCGCGTGACCCGCAACGAGATCAA
GCACGGGATGGTGATCGCCCAGGACACGACCAGCCGCAGGGTCGTGGGTT
TCCTCGAGATCGGGATGCTCCCCAAGCCCAGCTCCTCGGAGGAGAGCGCC
CTCGCAGGGGAGAGCCTGACGGCCGCCAGGGCGGCGGCCGCGCTGGCGGC
GGCGGCGGAAGCTTCGGGCGCGAAAAAGAAGCCAGACAGCGAGCGTTCTT
CGTCGACACCGCCGCGGGCGGGTGAAACGACTACCGAGGATGAAGCGGGG
GGGAGACCGAGCGAGGAGGAGGGTGGGGGGCGGAGAGAAGGGGGGCGTGA
AGAGAGCAGCACCACTGCCATCAAGAGGGAGAAGCAGCCGGAGGTGGCCT
ACCTGGCCAACGTGGTGGTCGACAGAGGGCAGCGGCGGAGGGGGATCGGC
CGCACGATGGTCAGCTCGGCCATCGAGATCGTGAGGGAGCTGTGGCCGGC
GGAGGAGAACATATACGTGTCCGTTGAGCAGGCAAGAGCCGAGTTCGCCT
TCTTCGGGCAGATCAAGGGCCGCCTGGGGCGCGTGACCCGCAACGAGATC
AAGCACGGGATGGTGATCGCCCAGGACACGACCAGCCGCAGGGTCGTGGG
TTTCCTCGAGATCGGGATGCTCCCCAAGCCCAGCTCCTCGGAGGAGAGCG
CCCTCGCAGGGGAGAGCCTGACGGCCGCCAGGGCGGCGGCCGCGCTGGCG
GCGGCGGCGGAAGCTTCGGGCGCGAAAAAGAAGCCAGACAGCGAGCGTTC
TTCGTCGACACCGCCGCGGGCGGGTGAAACGACTACCGAGGATGAAGCGG
GGGGGAGACCGAGCGAGGAGGAGGGTGGGGGGCGGAGAGAAGGGGGGCGT
GAAGAGAGCAGCACCACTGCCATCAAGAGGGAGAAGCAGCCGGAGGTGGC
CTACCTGGCCAACGTGGTGGTCGACAGAGGGCAGCGGCGGAGGGGGATCG
GCCGCACGATGGTCAGCTCGGCCATCGAGATCGTGAGGGAGCTGTGGCCG
GCGGAGGAGAACATATACGTGTCCGTTGAGCAGGCAAGAGCCGGCAACGA
CATTGCGCTAGCTCTGTACCAAGGGATGGGCTTCGAGTTGGCGGCGCTGG
AGGACGAGATGATGGCGAGAAGCCGAAGACGCCCACCCCGGGTGTACCTC
TCGAAGCCGCTCCACGAGTAGGGCAACGACATTGCGCTAGCTCTGTACCA
AGGGATGGGCTTCGAGTTGGCGGCGCTGGAGGACGAGATGATGGCGAGAA
GCCGAAGACGCCCACCCCGGGTGTACCTCTCGAAGCCGCTCCACGAGTAG back to top
|