mRNA_E-fasciculatus_F_contig1592.4054.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1592.4054.1
Unique NamemRNA_E-fasciculatus_F_contig1592.4054.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1592.4054.1 vs. uniprot
Match: D7G1A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A0_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 2.140e-66
Identity = 101/116 (87.07%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 LASARPPLSPCRVAAAVGRKSWATSATKRGNNNNIDDDDGDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRELVWFEDPVFYLGLCLIVPVVGLVWGVLNCYIPGICPSTL 348
            +ASA PP  PCRVAAA  R SWATSATKRG      DDDGDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRELVWFEDPVFYLGLCLIVPVVGLVWG LNCY+PGICPSTL
Sbjct:    1 MASAGPPFFPCRVAAAAERSSWATSATKRGKEG---DDDGDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRELVWFEDPVFYLGLCLIVPVVGLVWGALNCYVPGICPSTL 113
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BLAST of mRNA_E-fasciculatus_F_contig1592.4054.1 vs. uniprot
Match: A0A6H5KI54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI54_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 1.890e-65
Identity = 101/116 (87.07%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:    1 LASARPPLSPCRVAAAVGRKSWATSATKRGNNNNIDDDDGDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRELVWFEDPVFYLGLCLIVPVVGLVWGVLNCYIPGICPSTL 348
            LASA PP  PCRVAAA  R SWAT ATKRGN +N DDDD DRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRELVWFEDPVFYLGLCLIVPVVGLVWG  NCY+PGICP+TL
Sbjct:   55 LASAGPPFFPCRVAAAAERNSWATRATKRGNTSN-DDDDIDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRELVWFEDPVFYLGLCLIVPVVGLVWGAFNCYVPGICPATL 169
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1592.4054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1A0_ECTSI2.140e-6687.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI54_9PHAE1.890e-6587.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1592contigE-fasciculatus_F_contig1592:9801..10151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005270.1
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928061.7282057-CDS-E-fasciculatus_F_contig1592:9800..101511622928061.7282057-CDS-E-fasciculatus_F_contig1592:9800..10151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1592 9801..10151 -
1695995807.1707065-CDS-E-fasciculatus_F_contig1592:9800..101511695995807.1707065-CDS-E-fasciculatus_F_contig1592:9800..10151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1592 9801..10151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1592.4054.1prot_E-fasciculatus_F_contig1592.4054.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1592 9801..10151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1592.4054.1

>prot_E-fasciculatus_F_contig1592.4054.1 ID=prot_E-fasciculatus_F_contig1592.4054.1|Name=mRNA_E-fasciculatus_F_contig1592.4054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=117bp
LASARPPLSPCRVAAAVGRKSWATSATKRGNNNNIDDDDGDRIDMLTGSG
LRGVDTSKLTGNEKRDADWFLRTNSRELVWFEDPVFYLGLCLIVPVVGLV
WGVLNCYIPGICPSTL*
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mRNA from alignment at E-fasciculatus_F_contig1592:9801..10151-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1592.4054.1 ID=mRNA_E-fasciculatus_F_contig1592.4054.1|Name=mRNA_E-fasciculatus_F_contig1592.4054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=351bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1592:9801..10151- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGGCTTCGGCAAGGCCACCCCTCTCCCCGTGCAGGGTGGCGGCGGCGGT
GGGGCGAAAAAGCTGGGCGACGAGTGCAACGAAGAGGGGGAACAACAACA
ACATCGACGACGACGATGGTGACAGGATCGACATGCTGACGGGGAGCGGG
CTGCGCGGCGTGGACACGAGCAAGCTCACGGGAAACGAGAAGCGGGACGC
CGATTGGTTCCTCCGCACGAACTCCCGTGAGCTCGTGTGGTTCGAAGACC
CCGTGTTCTACCTCGGCCTGTGCTTGATTGTCCCGGTGGTCGGCCTTGTG
TGGGGCGTCTTGAATTGCTACATCCCGGGAATCTGCCCCTCCACGTTGTA
A
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1592:9801..10151-

>mRNA_E-fasciculatus_F_contig1592.4054.1 ID=mRNA_E-fasciculatus_F_contig1592.4054.1|Name=mRNA_E-fasciculatus_F_contig1592.4054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1592:9801..10151- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGGCTTCGGCAAGGCCACCCCTCTCCCCGTGCAGGGTGGCGGCGGCGGT
GGGGCGAAAAAGCTGGGCGACGAGTGCAACGAAGAGGGGGAACAACAACA
ACATCGACGACGACGATGGTGACAGGATCGACATGCTGACGGGGAGCGGG
CTGCGCGGCGTGGACACGAGCAAGCTCACGGGAAACGAGAAGCGGGACGC
CGATTGGTTCCTCCGCACGAACTCCCGTGAGCTCGTGTGGTTCGAAGACC
CCGTGTTCTACCTCGGCCTGTGCTTGATTGTCCCGGTGGTCGGCCTTGTG
TGGGGCGTCTTGAATTGCTACATCCCGGGAATCTGCCCCTCCACGTTGTA
ATTGGCTTCGGCAAGGCCACCCCTCTCCCCGTGCAGGGTGGCGGCGGCGG
TGGGGCGAAAAAGCTGGGCGACGAGTGCAACGAAGAGGGGGAACAACAAC
AACATCGACGACGACGATGGTGACAGGATCGACATGCTGACGGGGAGCGG
GCTGCGCGGCGTGGACACGAGCAAGCTCACGGGAAACGAGAAGCGGGACG
CCGATTGGTTCCTCCGCACGAACTCCCGTGAGCTCGTGTGGTTCGAAGAC
CCCGTGTTCTACCTCGGCCTGTGCTTGATTGTCCCGGTGGTCGGCCTTGT
GTGGGGCGTCTTGAATTGCTACATCCCGGGAATCTGCCCCTCCACGTTGT
AA
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