mRNA_E-fasciculatus_F_contig15915.4051.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15915.4051.1
Unique NamemRNA_E-fasciculatus_F_contig15915.4051.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15915.4051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15915contigE-fasciculatus_F_contig15915:732..1784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_007350.1
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15915.4051.1prot_E-fasciculatus_F_contig15915.4051.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15915 814..1784 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928058.5354483-UTR-E-fasciculatus_F_contig15915:731..8131622928058.5354483-UTR-E-fasciculatus_F_contig15915:731..813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15915 732..813 -
1695995807.0120118-UTR-E-fasciculatus_F_contig15915:731..8131695995807.0120118-UTR-E-fasciculatus_F_contig15915:731..813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15915 732..813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928058.6146023-CDS-E-fasciculatus_F_contig15915:813..9241622928058.6146023-CDS-E-fasciculatus_F_contig15915:813..924Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15915 814..924 -
1695995807.0230656-CDS-E-fasciculatus_F_contig15915:813..9241695995807.0230656-CDS-E-fasciculatus_F_contig15915:813..924Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15915 814..924 -
1622928058.625916-CDS-E-fasciculatus_F_contig15915:1592..17841622928058.625916-CDS-E-fasciculatus_F_contig15915:1592..1784Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15915 1593..1784 -
1695995807.0325246-CDS-E-fasciculatus_F_contig15915:1592..17841695995807.0325246-CDS-E-fasciculatus_F_contig15915:1592..1784Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15915 1593..1784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15915.4051.1

>prot_E-fasciculatus_F_contig15915.4051.1 ID=prot_E-fasciculatus_F_contig15915.4051.1|Name=mRNA_E-fasciculatus_F_contig15915.4051.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
VRETGPTSKKTQPEECRWTGRPVAHAGWTYASGVTRRGGRRDAGLWGKLR
AGPGGPAVFRTIVEQHSRTRRSRSKRRPRPAFPGCHDDHRSGSVSVEGLC
*
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mRNA from alignment at E-fasciculatus_F_contig15915:732..1784-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15915.4051.1 ID=mRNA_E-fasciculatus_F_contig15915.4051.1|Name=mRNA_E-fasciculatus_F_contig15915.4051.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1053bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15915:732..1784- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTACGAGAGACAGGACCGACATCCAAGAAGACGCAGCCGGAGGAGTGTAG
GTGGACCGGCAGACCAGTTGCTCACGCCGGGTGGACCTATGCGTCTGGCG
TGACAAGAAGGGGCGGAAGGAGGGACGCCGGGCTGTGGGGGAAATTGCGC
GCGGGACCTGGTGGTCCTGCCGTGTTCCGCACCATCGTCGAGGTAGGTGG
CCGTGTTTCTTCACCTTCATTCGCTAGGTGTAACCGTTCGAAATTTTAAG
GGGTGGGTATTCACGGAACGATTTTTAATGGAGCCGGACGTGTAAATATC
ACTCCGCACCGTGACTTTTCCAAATGAAACAATCGTTCCTTGTGTCTCTG
TGGTATTATAACAAAGGTCCGCTCCACGAGCGTTTGCCCCCCTCTGAACC
GAGAAAAAAAAACGACCACCACACCGTACACAAGATCCGATGATTTCGAT
GTATGAACTAAAACATATTCGCGAAATAGAGGTACCTACTCATGAGTCAT
TCTTTTCCGTATGACTGTAGCACTTTCTTCTGATGGTGTACTGTCGCCGA
GGCCGCGGGTTCACGCGGTTCATCCTAAGGTGTATAGACGAAACCGTGAA
ACTTGAAAATACAACTCCTCGTACAATCGCTCCGCTCAGTTCCGTGATCC
CAGGATAAAAACAAATGGTTTGCTTGGTGACATTGTGAAAGATAGCAAGA
CGCTAGACGGTCCGCGGCGGGTTTCTATCTATATGAACACCGCTGGTATT
TTTGGTCGTGATAGTCTTCTTCGTGCCAGTCACATCCAAATATGTAATAT
TTTGCTGTGACGGTAATCTAAACGCGCCTCCTCTCTCTGTCCTTGTCTTC
GTCTCTATAGCAACACAGCCGAACGAGGCGGTCGAGGAGTAAACGCAGAC
CCCGACCCGCCTTTCCCGGGTGCCACGACGATCATCGGAGCGGGTCGGTT
TCTGTGGAGGGACTTTGTTGAGGAACGTGCGGCCCAAGGTTCATACGGAG
TGAAACGGAGGACCAGGTCCACTGAAAAACTCGAAGCTGGGTGTTGCGGG
TAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15915:732..1784-

>mRNA_E-fasciculatus_F_contig15915.4051.1 ID=mRNA_E-fasciculatus_F_contig15915.4051.1|Name=mRNA_E-fasciculatus_F_contig15915.4051.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15915:732..1784- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTACGAGAGACAGGACCGACATCCAAGAAGACGCAGCCGGAGGAGTGTAG
GTGGACCGGCAGACCAGTTGCTCACGCCGGGTGGACCTATGCGTCTGGCG
TGACAAGAAGGGGCGGAAGGAGGGACGCCGGGCTGTGGGGGAAATTGCGC
GCGGGACCTGGTGGTCCTGCCGTGTTCCGCACCATCGTCGAGGTACGAGA
GACAGGACCGACATCCAAGAAGACGCAGCCGGAGGAGTGTAGGTGGACCG
GCAGACCAGTTGCTCACGCCGGGTGGACCTATGCGTCTGGCGTGACAAGA
AGGGGCGGAAGGAGGGACGCCGGGCTGTGGGGGAAATTGCGCGCGGGACC
TGGTGGTCCTGCCGTGTTCCGCACCATCGTCGAGCAACACAGCCGAACGA
GGCGGTCGAGGAGTAAACGCAGACCCCGACCCGCCTTTCCCGGGTGCCAC
GACGATCATCGGAGCGGGTCGGTTTCTGTGGAGGGACTTTGTTGACAACA
CAGCCGAACGAGGCGGTCGAGGAGTAAACGCAGACCCCGACCCGCCTTTC
CCGGGTGCCACGACGATCATCGGAGCGGGTCGGTTTCTGTGGAGGGACTT
TGTTGA
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