mRNA_E-fasciculatus_F_contig15911.4050.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15911.4050.1 vs. uniprot
Match: A0A6H5JY97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY97_9PHAE) HSP 1 Score: 121 bits (304), Expect = 2.550e-28 Identity = 62/107 (57.94%), Postives = 81/107 (75.70%), Query Frame = 1
Query: 1 RLDGAQSGGAVYRRVVVRNISCTAAVVVAYIITTIVTVTALRREHPDDNTNTQVVDVSLMTNEVVVLCLTEVALPLGFTSCWKACSLELCRRSSPSKKGSSDLETEV 321
RL+G+QSG A+YR VV++NI+CT AVV AY +TT+V + AL R+ D NT + D++ + N+ V LCLTE+ALPLGF+SCWKACSLELC SS +G SDLET +
Sbjct: 239 RLEGSQSGEAMYRMVVIKNITCTIAVVTAYAVTTVVVIAALIRQSNDSNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKACSLELCSWSSSPNEGPSDLETAM 345
BLAST of mRNA_E-fasciculatus_F_contig15911.4050.1 vs. uniprot
Match: D8LG96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG96_ECTSI) HSP 1 Score: 105 bits (261), Expect = 1.820e-22 Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1
Query: 1 RLDGAQSGGAVYRRVVVRNISCTAAVVVAYIITTIVTVTALRREHPDDNTNTQVVDVSLMTNEVVVLCLTEVALPLGFTSCWKACSLELCRRSSPSKKGSSDLETEVT 324
RL+G+QSG A+YRRVV++NI+CT AVV AY +TT+V + AL R++ D NT +ALPLGFTSCWKACSLELC S SK+G SDLET +T
Sbjct: 236 RLEGSQSGEAIYRRVVIKNITCTIAVVTAYAVTTVVVIAALLRQNNDSNT---------------------IALPLGFTSCWKACSLELCTWPSSSKEGPSDLETAMT 322
BLAST of mRNA_E-fasciculatus_F_contig15911.4050.1 vs. uniprot
Match: D7G2C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C9_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 2.110e-21 Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1
Query: 1 RLDGAQSGGAVYRRVVVRNISCTAAVVVAYIITTIVTVTALRREHPDDNTNTQVVDVSLMTNEVVVLCLTEVALPLGFTSCWKACS 258
R++GAQSGGAVYRRVV+RN+ CTA +V++Y ITT+V V AL RE + N + Q+ DV+L N + LCLTE+ LPLGF SC KACS
Sbjct: 89 RVEGAQSGGAVYRRVVLRNVFCTAGIVISYAITTLVVVIALLRESVESNKSAQIRDVALAANSLGTLCLTEITLPLGFRSCMKACS 174
BLAST of mRNA_E-fasciculatus_F_contig15911.4050.1 vs. uniprot
Match: A0A6H5JQ65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ65_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 4.400e-12 Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query: 1 RLDGAQSGGAVYRRVVVRNISCTAAVVVAYIITTIVTVTALRREHPDDNT 150
RL+G QSGGAVYR VVVRN+SCTAAVVV+YIITTIVTV AL R+HP+D T
Sbjct: 209 RLEGVQSGGAVYRSVVVRNVSCTAAVVVSYIITTIVTVIALLRQHPNDTT 258
BLAST of mRNA_E-fasciculatus_F_contig15911.4050.1 vs. uniprot
Match: D8LG97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG97_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 2.910e-11 Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 1
Query: 1 RLDGAQSGGAVYRRVVVRNISCTAAVVVAYIITTIVTVTALRREHPDD 144
RL+GAQSGGAVYR VV+RNISCT AVVV+YIITTIVTV AL R+HP+D
Sbjct: 255 RLEGAQSGGAVYRSVVIRNISCTVAVVVSYIITTIVTVIALLRQHPND 302
BLAST of mRNA_E-fasciculatus_F_contig15911.4050.1 vs. uniprot
Match: A0A6H5K249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K249_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 1.700e-10 Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 16 QSGGAVYRRVVVRNISCTAAVVVAYIITTIVTVTALRREHPDDNTNTQVVDVSLMTNEVVVLCLTEVALPLGFTSCWKACSLE 264
QSGGAVYRR+V+RN++CT A+ Y +TT++ V P Q+ D+ N V LCLTE++LPLGF+SC KA E
Sbjct: 122 QSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCLTELSLPLGFSSCVKAIKAE 204
BLAST of mRNA_E-fasciculatus_F_contig15911.4050.1 vs. uniprot
Match: A0A6H5JPA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA3_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 3.970e-10 Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 16 QSGGAVYRRVVVRNISCTAAVVVAYIITTIVTVTALRREHPDDNTNTQVVDVSLMTNEVVVLCLTEVALPLGFTSCWKACSLE 264
QSGGAVYRR+V+RN++CT A+ Y +TT++ V P Q+ D+ N V LCLTE++LPLGF+SC KA E
Sbjct: 223 QSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCLTEISLPLGFSSCVKAIKAE 305
BLAST of mRNA_E-fasciculatus_F_contig15911.4050.1 vs. uniprot
Match: D8LN45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN45_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 2.670e-9 Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 16 QSGGAVYRRVVVRNISCTAAVVVAYIITTIVTVTALRREHPDDNTNTQVVDVSLMTNEVVVLCLTEVALPLGFTSCWKACSLE 264
QSGGAVYRR+V+RN++CT + Y +TT++ V P Q+ D+ N V LC+TE++LPLGF+SC K+ E
Sbjct: 92 QSGGAVYRRLVMRNVACTIGITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCVTEMSLPLGFSSCVKSIKAE 174
BLAST of mRNA_E-fasciculatus_F_contig15911.4050.1 vs. uniprot
Match: A0A6H5JPA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA0_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 2.860e-7 Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 16 QSGGAVYRRVVVRNISCTAAVVVAYIITTIVTVTALRREHPDDNTNTQVVDVSLMTNEVVVLCLTEV 216
QSGGAVYRRVV+RNI CT + AY+ITT+V V AL PD + V D+ N V LCLTEV
Sbjct: 177 QSGGAVYRRVVIRNIVCTIGIACAYVITTVVVVLALLSSRPDTDKAAAVGDIVPSINICVTLCLTEV 243
BLAST of mRNA_E-fasciculatus_F_contig15911.4050.1 vs. uniprot
Match: D8LN53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN53_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 3.460e-6 Identity = 36/69 (52.17%), Postives = 42/69 (60.87%), Query Frame = 1
Query: 10 GAQSGGAVYRRVVVRNISCTAAVVVAYIITTIVTVTALRREHPDDNTNTQVVDVSLMTNEVVVLCLTEV 216
G QSGGAVYRRVVVRNI CT + AY+ITT+V V A D N + ++ N V LCLTEV
Sbjct: 32 GTQSGGAVYRRVVVRNIVCTVGIACAYVITTVVVVLAHVSTPSDTNKAAVLGHITPSINICVTLCLTEV 100 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15911.4050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15911.4050.1 >prot_E-fasciculatus_F_contig15911.4050.1 ID=prot_E-fasciculatus_F_contig15911.4050.1|Name=mRNA_E-fasciculatus_F_contig15911.4050.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=55bp MTNEVVVLCLTEVALPLGFTSCWKACSLELCRRSSPSKKGSSDLETEVTPback to top mRNA from alignment at E-fasciculatus_F_contig15911:2..2884+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15911.4050.1 ID=mRNA_E-fasciculatus_F_contig15911.4050.1|Name=mRNA_E-fasciculatus_F_contig15911.4050.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2883bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15911:2..2884+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15911:2..2884+ >mRNA_E-fasciculatus_F_contig15911.4050.1 ID=mRNA_E-fasciculatus_F_contig15911.4050.1|Name=mRNA_E-fasciculatus_F_contig15911.4050.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15911:2..2884+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |