mRNA_E-fasciculatus_F_contig15907.4047.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15907.4047.1
Unique NamemRNA_E-fasciculatus_F_contig15907.4047.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15907.4047.1 vs. uniprot
Match: D7FLL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL5_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 6.580e-30
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 RYQVDIDLKKTVDESALKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 180
            RYQVDIDLKK VDE+A+KASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF
Sbjct:  103 RYQVDIDLKKAVDETAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 162
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BLAST of mRNA_E-fasciculatus_F_contig15907.4047.1 vs. uniprot
Match: A0A836CBN1_9STRA (60S ribosomal protein L27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.010e-17
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 RYQVDIDLKKTVDESALKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 180
            RY  DI+LK  V+ESA KAS  +VRKAV+K+FEERYLNQ  +KSEKKA+G KYFF KL F
Sbjct:   83 RYTADIELKTVVEESAFKASRPEVRKAVKKVFEERYLNQGQIKSEKKASGSKYFFAKLAF 142
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BLAST of mRNA_E-fasciculatus_F_contig15907.4047.1 vs. uniprot
Match: B8CDJ9_THAPS (60S ribosomal protein L27 n=2 Tax=Thalassiosira TaxID=35127 RepID=B8CDJ9_THAPS)

HSP 1 Score: 77.4 bits (189), Expect = 1.240e-16
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 RYQVDIDLKKTVDESALKASPT--DVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 180
            RYQVD+DLKK VDE+ L A+    +V+KA++KIFE+RYLNQK+V SEKKA G  YFF+KLRF
Sbjct:   84 RYQVDMDLKKAVDEADLLAADKKIEVKKALKKIFEDRYLNQKEVTSEKKAAGSSYFFQKLRF 145
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BLAST of mRNA_E-fasciculatus_F_contig15907.4047.1 vs. uniprot
Match: A0A7S1BL28_9STRA (60S ribosomal protein L27 n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BL28_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.800e-15
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 RYQVDIDLKKTVDESALKASP-------TDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 180
            RYQVD+DLKK V E AL ++         D +KA++++FEERYLNQKDV SEKKA G  YFF+KLRF
Sbjct:   90 RYQVDMDLKKVVGEQALASTDGLRGDARVDAKKALKRVFEERYLNQKDVTSEKKAIGSNYFFKKLRF 156
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BLAST of mRNA_E-fasciculatus_F_contig15907.4047.1 vs. uniprot
Match: A0A7S2SP13_9STRA (60S ribosomal protein L27 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP13_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.810e-15
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 RYQVDIDLKKTVDESAL--KASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 180
            RYQVD+DLKK VDE+ L  +    +V+K ++KIFE+RYLNQK+V SEKKA G  YFF+KLRF
Sbjct:   84 RYQVDMDLKKAVDEADLLNEEKKVEVKKNLKKIFEDRYLNQKNVTSEKKAAGSNYFFQKLRF 145
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BLAST of mRNA_E-fasciculatus_F_contig15907.4047.1 vs. uniprot
Match: A0A7S4SWS4_9DINO (60S ribosomal protein L27 (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SWS4_9DINO)

HSP 1 Score: 72.0 bits (175), Expect = 1.520e-14
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 RYQVDIDLKKTVDESALKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYF 162
            RY VD+DLKKTVDE+A K +  + RK V+KIFE+RYLNQ   KSEKKA+GV+YF
Sbjct:   90 RYSVDMDLKKTVDEAAFKEAKKETRKTVKKIFEDRYLNQASGKSEKKASGVQYF 143
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BLAST of mRNA_E-fasciculatus_F_contig15907.4047.1 vs. uniprot
Match: A0A024GB05_9STRA (Uncharacterized protein n=3 Tax=Albugo TaxID=65356 RepID=A0A024GB05_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 RYQVDIDLKKTVDESALKA--SPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 180
            RY VDIDLKK +D+  +    S  + RK ++K+FEERYLNQ D  SEKKATGV +FF+KLRF
Sbjct:  113 RYIVDIDLKKVLDDDVMSKPESRVETRKTIKKVFEERYLNQADCSSEKKATGVSFFFKKLRF 174
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BLAST of mRNA_E-fasciculatus_F_contig15907.4047.1 vs. uniprot
Match: A0A6S8Z8U4_9STRA (60S ribosomal protein L27 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8Z8U4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.250e-14
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 RYQVDIDLKKTVDESALKASP--TDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 180
            RY VD+DLKKTVDE+ +K +    DV+K ++ IFE+RYLNQK V SEKKA G  YFF+KLRF
Sbjct:   84 RYVVDMDLKKTVDEADVKNAERKVDVKKNLKTIFEDRYLNQKAVTSEKKAAGSSYFFQKLRF 145
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BLAST of mRNA_E-fasciculatus_F_contig15907.4047.1 vs. uniprot
Match: A0A7S0FQ72_9STRA (60S ribosomal protein L27 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FQ72_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.750e-14
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 RYQVDIDLKKTVDESALKASP--TDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 180
            RY VD+DLKK VDE+ L ++    DV+K ++KIFE++YLNQK V SEKKA G  YFF+KLRF
Sbjct:   93 RYVVDMDLKKAVDEADLASAERKVDVKKGLKKIFEDKYLNQKAVTSEKKAAGSNYFFQKLRF 154
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BLAST of mRNA_E-fasciculatus_F_contig15907.4047.1 vs. uniprot
Match: A0A2D4BF17_PYTIN (60S ribosomal protein L27 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4BF17_PYTIN)

HSP 1 Score: 71.2 bits (173), Expect = 3.110e-14
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 RYQVDIDLKKTVDESALKASPT---DVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 180
            RY VDIDLKK +D+  L A+P    + RK ++K+FEERYLNQ  VKSEKKA GV +FF+KLRF
Sbjct:   83 RYVVDIDLKKVLDDEVL-ANPESRIESRKTIKKVFEERYLNQSAVKSEKKAAGVSFFFKKLRF 144
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15907.4047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL5_ECTSI6.580e-3095.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBN1_9STRA1.010e-1768.3360S ribosomal protein L27 n=1 Tax=Tribonema minus ... [more]
B8CDJ9_THAPS1.240e-1666.1360S ribosomal protein L27 n=2 Tax=Thalassiosira Ta... [more]
A0A7S1BL28_9STRA1.800e-1559.7060S ribosomal protein L27 n=2 Tax=Corethron hystri... [more]
A0A7S2SP13_9STRA2.810e-1562.9060S ribosomal protein L27 n=1 Tax=Rhizochromulina ... [more]
A0A7S4SWS4_9DINO1.520e-1466.6760S ribosomal protein L27 (Fragment) n=1 Tax=Alexa... [more]
A0A024GB05_9STRA2.100e-1459.68Uncharacterized protein n=3 Tax=Albugo TaxID=65356... [more]
A0A6S8Z8U4_9STRA2.250e-1462.9060S ribosomal protein L27 n=2 Tax=Ditylum brightwe... [more]
A0A7S0FQ72_9STRA2.750e-1461.2960S ribosomal protein L27 n=1 Tax=Minutocellus pol... [more]
A0A2D4BF17_PYTIN3.110e-1461.9060S ribosomal protein L27 n=3 Tax=Eukaryota TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15907contigE-fasciculatus_F_contig15907:77..259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue2.5e-23
Seed eggNOG ortholog2880.D7FLL5
Preferred nameRPL27
KEGG rclassRC00017
KEGG koko:K02901,ko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,ko03010,map00563,map01100,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030684,GO:0030687,GO:0030867,GO:0031090,GO:0031960,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034101,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042221,GO:0042254,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051385,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097305,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901654,GO:1901700,GO:1904044,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsCOG2163@1,KOG3418@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L27e
Ec32 orthologEc-17_000680.1
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928057.681004-CDS-E-fasciculatus_F_contig15907:76..2591622928057.681004-CDS-E-fasciculatus_F_contig15907:76..259Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15907 77..259 +
1695995806.7008386-CDS-E-fasciculatus_F_contig15907:76..2591695995806.7008386-CDS-E-fasciculatus_F_contig15907:76..259Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15907 77..259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15907.4047.1prot_E-fasciculatus_F_contig15907.4047.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15907 77..259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15907.4047.1

>prot_E-fasciculatus_F_contig15907.4047.1 ID=prot_E-fasciculatus_F_contig15907.4047.1|Name=mRNA_E-fasciculatus_F_contig15907.4047.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=61bp
RYQVDIDLKKTVDESALKASPTDVRKAVRKIFEERYLNQKDVKSEKKATG
VKYFFEKLRF*
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mRNA from alignment at E-fasciculatus_F_contig15907:77..259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15907.4047.1 ID=mRNA_E-fasciculatus_F_contig15907.4047.1|Name=mRNA_E-fasciculatus_F_contig15907.4047.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=183bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15907:77..259+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTACCAGGTGGACATCGACCTCAAGAAGACCGTCGACGAGTCTGCCTT
GAAGGCCTCCCCCACCGACGTCCGCAAGGCGGTGAGGAAGATCTTCGAGG
AGCGGTACCTGAACCAGAAGGACGTCAAGTCCGAGAAGAAGGCCACCGGC
GTCAAGTACTTCTTCGAGAAGCTCCGCTTCTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15907:77..259+

>mRNA_E-fasciculatus_F_contig15907.4047.1 ID=mRNA_E-fasciculatus_F_contig15907.4047.1|Name=mRNA_E-fasciculatus_F_contig15907.4047.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15907:77..259+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTACCAGGTGGACATCGACCTCAAGAAGACCGTCGACGAGTCTGCCTT
GAAGGCCTCCCCCACCGACGTCCGCAAGGCGGTGAGGAAGATCTTCGAGG
AGCGGTACCTGAACCAGAAGGACGTCAAGTCCGAGAAGAAGGCCACCGGC
GTCAAGTACTTCTTCGAGAAGCTCCGCTTCTAAAGGTACCAGGTGGACAT
CGACCTCAAGAAGACCGTCGACGAGTCTGCCTTGAAGGCCTCCCCCACCG
ACGTCCGCAAGGCGGTGAGGAAGATCTTCGAGGAGCGGTACCTGAACCAG
AAGGACGTCAAGTCCGAGAAGAAGGCCACCGGCGTCAAGTACTTCTTCGA
GAAGCTCCGCTTCTAA
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