mRNA_E-fasciculatus_F_contig15899.4041.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15899.4041.1
Unique NamemRNA_E-fasciculatus_F_contig15899.4041.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15899.4041.1 vs. uniprot
Match: A0A6H5LAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU0_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 1.230e-45
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEA 234
            GWRARLLGDTTFMTKLAIEMVTGT AQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEA
Sbjct:   37 GWRARLLGDTTFMTKLAIEMVTGTGAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEA 114          
BLAST of mRNA_E-fasciculatus_F_contig15899.4041.1 vs. uniprot
Match: D7FZL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL4_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.370e-44
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEA 234
            GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGK+FMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEA
Sbjct:  161 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKKFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEA 238          
BLAST of mRNA_E-fasciculatus_F_contig15899.4041.1 vs. uniprot
Match: A0A7S3XYV0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYV0_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 6.550e-16
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKA 216
            G+R RL+ D +F+TK A+E+  G   Q  AE ++RG + +Q+LDFV AD LTC+ ANF AVWL+ PT+A  A
Sbjct:   62 GFRNRLMNDPSFLTKCAMEIGIGGVCQLAAEVKERGDKLLQQLDFVVADVLTCVIANFMAVWLAAPTLAALA 133          
BLAST of mRNA_E-fasciculatus_F_contig15899.4041.1 vs. uniprot
Match: A0A7J7PTU3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PTU3_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.140e-13
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKA 216
            G+R RLL D +F+TKLAIE+  G   +  AEY KRG+ F +ELDFVAA+ +  + A+F  VWL  PT++  A
Sbjct:   57 GFRERLLADPSFLTKLAIEVGIGVCTKCTAEYAKRGESFNKELDFVAANVVMAIIADFMLVWLPAPTLSYAA 128          
BLAST of mRNA_E-fasciculatus_F_contig15899.4041.1 vs. uniprot
Match: UPI00125CEE82 (protein RETICULATA-RELATED 4, chloroplastic-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125CEE82)

HSP 1 Score: 73.2 bits (178), Expect = 2.060e-13
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVK 213
            G+R RLLGD  F+ KL +E   G   +  AE QKRG++F +ELDFV AD +  L A+F  VWL  PTV+++
Sbjct:  162 GFRERLLGDDLFLAKLGMECGVGIFTKMAAELQKRGEKFSKELDFVCADVIMALVADFMLVWLPAPTVSLR 232          
BLAST of mRNA_E-fasciculatus_F_contig15899.4041.1 vs. uniprot
Match: A0A0K9NW10_ZOSMR (Uncharacterized protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NW10_ZOSMR)

HSP 1 Score: 72.0 bits (175), Expect = 5.140e-13
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKA 216
            G++ RLL D  F+TK+AIE   G   +  AEY+KR + F +ELDFV AD +  + A+F  VWL  PTV++KA
Sbjct:  150 GFKERLLADDLFLTKVAIECGVGVFTKTAAEYKKRKENFFKELDFVIADVVMAIIADFMLVWLPAPTVSLKA 221          
BLAST of mRNA_E-fasciculatus_F_contig15899.4041.1 vs. uniprot
Match: A0A388L9G5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9G5_CHABU)

HSP 1 Score: 72.0 bits (175), Expect = 5.910e-13
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEA 234
            G+R RLL D  F++K+  E   G   +  AEY++R  RFM+ELDFV AD +  + A+F  VWL  PTVA++A   K A
Sbjct:  263 GFRERLLADDLFVSKVLFECGIGVCTKTAAEYERRRDRFMKELDFVFADVIMAIIADFMLVWLPAPTVAIRAPIAKGA 340          
BLAST of mRNA_E-fasciculatus_F_contig15899.4041.1 vs. uniprot
Match: A0A443PX79_9MAGN (Protein RETICULATA-RELATED 4, chloroplastic-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PX79_9MAGN)

HSP 1 Score: 71.6 bits (174), Expect = 7.100e-13
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVK 213
            G++ RLL D  F+ K+ +E+V G  A+  AEY +RG++F +ELDFV AD +  + A+F  VWL  PTV+++
Sbjct:  156 GFKERLLADELFLHKITMEIVVGMFAKTAAEYNRRGEKFFKELDFVIADVVMAIIADFMLVWLPAPTVSLR 226          
BLAST of mRNA_E-fasciculatus_F_contig15899.4041.1 vs. uniprot
Match: A0A2J7ZNX1_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZNX1_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 8.090e-13
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVK 213
            G+R RLLGD +F  KLAIE+  G   +  AEY KRG+ F +E DFV A+TL  + A+F   WL  PT++ K
Sbjct:  153 GFRERLLGDPSFPVKLAIEIGIGVVMKITAEYTKRGESFYREADFVFANTLMAIIADFMLTWLPAPTLSYK 223          
BLAST of mRNA_E-fasciculatus_F_contig15899.4041.1 vs. uniprot
Match: UPI001929E0AF (LOW QUALITY PROTEIN: protein RETICULATA-RELATED 4, chloroplastic-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E0AF)

HSP 1 Score: 71.2 bits (173), Expect = 9.880e-13
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVK 213
            G++ RLL D  F+ K+A+E   G   + LAEYQ+RG+ F +ELDFV AD L  + A+F  VWL  PTV ++
Sbjct:  161 GFKERLLADDLFLAKVAMECGVGIFTKTLAEYQRRGENFTKELDFVIADVLMAIVADFMLVWLPAPTVPLR 231          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15899.4041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAU0_9PHAE1.230e-4598.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZL4_ECTSI1.370e-4498.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XYV0_HETAK6.550e-1651.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7J7PTU3_9CHLO1.140e-1350.00Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
UPI00125CEE822.060e-1349.30protein RETICULATA-RELATED 4, chloroplastic-like n... [more]
A0A0K9NW10_ZOSMR5.140e-1348.61Uncharacterized protein n=1 Tax=Zostera marina Tax... [more]
A0A388L9G5_CHABU5.910e-1346.15Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A443PX79_9MAGN7.100e-1345.07Protein RETICULATA-RELATED 4, chloroplastic-like p... [more]
A0A2J7ZNX1_9CHLO8.090e-1349.30Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]
UPI001929E0AF9.880e-1347.89LOW QUALITY PROTEIN: protein RETICULATA-RELATED 4,... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15899contigE-fasciculatus_F_contig15899:2264..2497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue3.2e-36
Seed eggNOG ortholog2880.D7FZL4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.Protein RETICULATA-related
EggNOG OGs28IK9@1,2QQX6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928056.100217-CDS-E-fasciculatus_F_contig15899:2263..24971622928056.100217-CDS-E-fasciculatus_F_contig15899:2263..2497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15899 2264..2497 +
1695995806.0010777-CDS-E-fasciculatus_F_contig15899:2263..24971695995806.0010777-CDS-E-fasciculatus_F_contig15899:2263..2497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15899 2264..2497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15899.4041.1prot_E-fasciculatus_F_contig15899.4041.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15899 2264..2497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15899.4041.1

>prot_E-fasciculatus_F_contig15899.4041.1 ID=prot_E-fasciculatus_F_contig15899.4041.1|Name=mRNA_E-fasciculatus_F_contig15899.4041.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADT
LTCLFANFAAVWLSCPTVAVKAVCKKEA
back to top

mRNA from alignment at E-fasciculatus_F_contig15899:2264..2497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15899.4041.1 ID=mRNA_E-fasciculatus_F_contig15899.4041.1|Name=mRNA_E-fasciculatus_F_contig15899.4041.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=234bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15899:2264..2497+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCTGGAGAGCGCGTCTCCTGGGAGACACGACGTTCATGACGAAGCTGGC CATCGAGATGGTCACGGGCACGGCGGCTCAGTTCCTGGCGGAGTACCAGA AGAGGGGAAAGAGGTTCATGCAGGAGCTAGACTTCGTCGCAGCGGACACC TTGACTTGCCTCTTCGCCAACTTCGCGGCGGTGTGGCTGTCGTGCCCCAC GGTGGCCGTCAAGGCCGTGTGCAAGAAGGAGGCG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15899:2264..2497+

>mRNA_E-fasciculatus_F_contig15899.4041.1 ID=mRNA_E-fasciculatus_F_contig15899.4041.1|Name=mRNA_E-fasciculatus_F_contig15899.4041.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15899:2264..2497+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCTGGAGAGCGCGTCTCCTGGGAGACACGACGTTCATGACGAAGCTGGC
CATCGAGATGGTCACGGGCACGGCGGCTCAGTTCCTGGCGGAGTACCAGA
AGAGGGGAAAGAGGTTCATGCAGGAGCTAGACTTCGTCGCAGCGGACACC
TTGACTTGCCTCTTCGCCAACTTCGCGGCGGTGTGGCTGTCGTGCCCCAC
GGTGGCCGTCAAGGCCGTGTGCAAGAAGGAGGCGGGCTGGAGAGCGCGTC
TCCTGGGAGACACGACGTTCATGACGAAGCTGGCCATCGAGATGGTCACG
GGCACGGCGGCTCAGTTCCTGGCGGAGTACCAGAAGAGGGGAAAGAGGTT
CATGCAGGAGCTAGACTTCGTCGCAGCGGACACCTTGACTTGCCTCTTCG
CCAACTTCGCGGCGGTGTGGCTGTCGTGCCCCACGGTGGCCGTCAAGGCC
GTGTGCAAGAAGGAGGCG
back to top