mRNA_E-fasciculatus_F_contig15894.4039.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15894.4039.1
Unique NamemRNA_E-fasciculatus_F_contig15894.4039.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15894.4039.1 vs. uniprot
Match: D7G4L9_ECTSI (Cellulosome anchoring protein, cohesin region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L9_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 6.600e-113
Identity = 255/368 (69.29%), Postives = 267/368 (72.55%), Query Frame = 3 
Query:  399 PTPLSYDFDIDYPTPAPVSEGLRPSPTEAPRTDRAMSPTSTAEPPTAAPAMXXXXXXXXXXXXXXXXXXXXXXX----PXXGVVQEPATTPEPIFQPSERGPVAPTSAGTTAAPSTPGAPWTQAPVTTGAQPPVSEGAFTCPPPVPCICEAPAEPTP-AAXXXXXXXXXXXXEATTAPAAMFTASPPGTPTSNAPAPTHDGSLPMAXXXXXXXXXX--QTAAPMSDGYASSDDDFEDDDNFFYF--------------------PSGEFDESGATPAPRATTPAPVTGRSQPHTPMPAVAADED-GEVDCSALLSPDMSTELAQKDKGVYYEKDCQGLHCNMFGISWDCRACYMDCVACEGDQEDLGT 1418
            PT +SYDF ID  TPAPV EGL+PSPT APRTD A +PTST E        XXXXXXXXXXXXXXXXXXXXXX     P  G VQEPA TPEPI QPSERG VAPT+AGTT APSTPG  WTQAP T GA PPVS   FTCPPPVPCICEAPAEPTP AA              TTAPAAM TAS PG PTSN P+PTHDGSLPMA   XXXXXXX   TA  M  G  SS D+FEDDD+  ++                    P GEFDE GATPAPRAT PAPV GRSQPHTPMPAV ADE+  EVDC +LLSP+MSTELAQKDKGVYYEKDCQGLHCNMFGI WDCRACYMDC ACEGDQEDLGT
Sbjct: 1956 PTAMSYDFKIDDTTPAPVYEGLQPSPTGAPRTDPAAAPTSTTESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALTSTPPTGAVQEPAATPEPISQPSERGAVAPTTAGTTPAPSTPGGSWTQAPATAGALPPVSGDVFTCPPPVPCICEAPAEPTPTAAPTSDATSVAAAAGVTTAPAAMPTASHPGMPTSNTPSPTHDGSLPMATPSXXXXXXXXNHTAPTMPGGSDSSTDEFEDDDDGLFYLPEDFDSIDGFQXXXXXXXXPDGEFDEPGATPAPRAT-PAPVAGRSQPHTPMPAVVADEEVEEVDCVSLLSPEMSTELAQKDKGVYYEKDCQGLHCNMFGIGWDCRACYMDCAACEGDQEDLGT 2322
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BLAST of mRNA_E-fasciculatus_F_contig15894.4039.1 vs. uniprot
Match: A0A6H5KK76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK76_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 4.600e-106
Identity = 251/363 (69.15%), Postives = 262/363 (72.18%), Query Frame = 3 
Query:  402 TPLSYDFDIDYPTPAPVSEGLRPSPTEAPRTDRAMSPTSTAEPPTAAPAMXXXXXXXXXXXXXXXXXXXXXXXPXXGVVQEPATTPEPIFQPSERGPVAPTSAGTTAAPSTPGAPWTQAPVTTGAQPPVSEGAFTCPPPVPCICEAPAEPTP-AAXXXXXXXXXXXXEATTAPAAMFTASPPGTPTSNAPAPTHDGSLPMAXXXXXXXXXX--QTAAPMSDGYASSDDDFEDDDN--FF------------------YFPSGEFDESGATPAPRATTPAPVTGRSQPHTPMPAVAADEDGE-VDCSALLSPDMSTELAQKDKGVYYEKDCQGLHCNMFGISWDCRACYMDCVACEGDQEDLGT 1418
            T +SYDF+ D  TPAPVSEGL+PSP  APR D A +PTST E     P  XXXXXXXXXXXXXXXXXXXXXXX XX   QEPA TPEPI QPSERG VAPTSAGTT APSTPG  WTQ P   GA PP S   FTCPPPVPCICEAPAEPTP AA              TTAPAAM TAS PGTPTSN P+PT DGSLPMA  XXXXXXXX  QTA  M  G  SS D+FEDDD+  F+                  YFP GEFDE  ATPAPRA  PAPV GRSQP+TP PAV ADED E VDC +LLSP+M  ELAQKDKGVYYEKDCQGLHCNMFGI WDCRACYMDC ACEGDQEDLGT
Sbjct: 3285 TAMSYDFNFDDTTPAPVSEGLQPSPMGAPRADPAAAPTSTTE-----PXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGQEPAATPEPISQPSERGSVAPTSAGTTPAPSTPGGSWTQVPAAAGAPPPASGDVFTCPPPVPCICEAPAEPTPTAAPTSEATSVTVAAGVTTAPAAMPTASHPGTPTSNTPSPTQDGSLPMATPXXXXXXXXHSQTAPTMPGGSDSSTDEFEDDDDGLFYLPEDPDSIDGFQXXXXXXYFPDGEFDEPDATPAPRAI-PAPVAGRSQPYTPTPAVVADEDEEEVDCVSLLSPEMLMELAQKDKGVYYEKDCQGLHCNMFGIGWDCRACYMDCAACEGDQEDLGT 3641
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15894.4039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4L9_ECTSI6.600e-11369.29Cellulosome anchoring protein, cohesin region n=1 ... [more]
A0A6H5KK76_9PHAE4.600e-10669.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15894contigE-fasciculatus_F_contig15894:505..2847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1419
Cds size891
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15894.4039.1prot_E-fasciculatus_F_contig15894.4039.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15894 1957..2847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928055.7568383-UTR-E-fasciculatus_F_contig15894:504..6511622928055.7568383-UTR-E-fasciculatus_F_contig15894:504..651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15894 505..651 -
1695995805.921392-UTR-E-fasciculatus_F_contig15894:504..6511695995805.921392-UTR-E-fasciculatus_F_contig15894:504..651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15894 505..651 -
1622928055.7690072-UTR-E-fasciculatus_F_contig15894:847..11371622928055.7690072-UTR-E-fasciculatus_F_contig15894:847..1137Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15894 848..1137 -
1695995805.93369-UTR-E-fasciculatus_F_contig15894:847..11371695995805.93369-UTR-E-fasciculatus_F_contig15894:847..1137Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15894 848..1137 -
1622928055.7796092-UTR-E-fasciculatus_F_contig15894:1866..19561622928055.7796092-UTR-E-fasciculatus_F_contig15894:1866..1956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15894 1867..1956 -
1695995805.9446008-UTR-E-fasciculatus_F_contig15894:1866..19561695995805.9446008-UTR-E-fasciculatus_F_contig15894:1866..1956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15894 1867..1956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928055.798686-CDS-E-fasciculatus_F_contig15894:1956..28471622928055.798686-CDS-E-fasciculatus_F_contig15894:1956..2847Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15894 1957..2847 -
1695995805.9556863-CDS-E-fasciculatus_F_contig15894:1956..28471695995805.9556863-CDS-E-fasciculatus_F_contig15894:1956..2847Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15894 1957..2847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15894.4039.1

>prot_E-fasciculatus_F_contig15894.4039.1 ID=prot_E-fasciculatus_F_contig15894.4039.1|Name=mRNA_E-fasciculatus_F_contig15894.4039.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=297bp
LPPQPLPPQPPPPLPLPPQPLPPQLLPPQLLPPLLLPPQPLSPLPCLRRL
LPPCLWRLLPSCLRHLLPRCLALQCPCPTISASTTQHRRLCLRPCSRRLE
HNPQLRLRRLPSHRPPTPPLPCPRRLLPPCRAPRHRCPTTSISTTQHRRL
CPRACGRRQRKRLEQTAPCRPHRLPSLRPLPPLCPRRLLRPCLRCLLPQC
RAPRRPPHQPVLSRSPQRLLSQSSSRARGGPWLLPPLVLPPHLRRRGHRG
LKHRSPQERNRQYPRAPSPARRPCPASAKRLRNPRRRQRRHRQQYR*
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mRNA from alignment at E-fasciculatus_F_contig15894:505..2847-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15894.4039.1 ID=mRNA_E-fasciculatus_F_contig15894.4039.1|Name=mRNA_E-fasciculatus_F_contig15894.4039.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2343bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15894:505..2847- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCCGCCCCAACCGCTGCCGCCCCAACCGCCGCCGCCCCTACCGCTGCC
GCCCCAACCGCTGCCGCCCCAACTGCTGCCGCCCCAACTGCTGCCGCCCC
TACTGCTGCCGCCCCAACCGCTGTCGCCCCTGCCATGCCTTCGGCGCCTT
CTCCCACCATGCCTATGGCGCCTTCTCCCATCATGCCTTCGGCACCTTCT
CCCACGATGCCTAGCGCTCCAATGTCCATGTCCTACGATTTCGGCTTCGA
CGACTCAGCACCGGCGCCTGTGTCTGAGGCCCTGCAGCCGGCGGCTCGAA
CACAACCCGCAGCTGCGCCTACGTCGACTGCCGAGCCACCGGCCACCGAC
GCCGCCCCTCCCATGCCCTCGGCGCCTTCTCCCGCCATGCCGAGCACCCC
GACACCGTTGTCCTACGACTTCGATATCGACTACCCAACACCGGCGCCTG
TGTCCGAGGGCCTGCGGCCGTCGCCAACGGAAGCGCCTCGAACAGACCGC
GCCATGTCGCCCACATCGACTGCCGAGCCTCCGACCGCTGCCCCCGCTAT
GCCCTCGGCGCCTTCTCCGACCATGCCTTCGGTGCCTTCTCCCACAATGC
CGAGCGCCCCGACGTCCACCCCACCAACCGGTGTTGTCCAGGAGCCCGCA
ACGACTCCTGAGCCAATCTTCCAGCCGAGCGAGAGGGGGCCCGTGGCTCC
TACCTCCGCTGGTACTACCGCCGCACCTTCGACGCCGGGGGCACCGTGGA
CTCAAGCACCGGTCACCACAGGAGCGCAACCGCCAGTATCCGAGGGCGCC
TTCACCTGCCCGCCGCCCGTGCCCTGCATCTGCGAAGCGCCTGCGGAACC
CACGCCGGCGGCAGCGCCGACACCGGCAGCAGTACCGGTAACAGCGGAGG
AGGCCACCACCGCCCCAGCTGCGATGTTCACGGCCTCGCCTCCTGGAACG
CCCACGAGCAACGCGCCCGCACCCACGCACGGTAAGTGGGTTTGTCGCAA
TGATGTTGAAGAATGATGGAATGAATATCGTTTTTGAAACTTGAAGCGGA
TCGAAACGAATTGTACCCCAACAGAGTGCCGAGATGAGTCGCACGCTTAC
GCACGCACGCACGCACGCACGCACGCTCCCTTCGGCGAGAAAATGTGAAA
AATTGTGCTTTAGTTGGTTCACTTTATTGGTGTATCTCTAGGGATTTCGC
CCTCCGGCGTGTTGTGTAATTTCTGATTATTTTTGTTGCAATGCTGCGGT
TGCTGGCTAGGCTTCAGGAGGTCTGAAGGCTCCGATAACATGCGCTGCGC
TTGTCCTCTCTCAAAAAACACAATCAGATTTGTGGTCCACTCCTTGTTTG
GTTTAGTGTGGTAGGCTTCTGTTGGTGTTGAGAAAGGCAAGGAAGGGTTG
AATTTCGACATCGAAGCAGCCAAGGACATGCACCATTCGCATGGCTGGCT
GCCATTTTGGGCCGTGGATGCATGCCATCTCGGAACGTTACGCGAACGTC
TGTTCCATCTGTTGTAGCTTCAACGCTCCTGTGTGGCCTTTCCTCTTGTG
TGACCGCGGCTGGTTCATCCAGAAATTGTTCCGAAAGGTGCAAAAGACCG
ATGTCCGGAACAAACTAAGACAAAACTTTGTATTTTTCCCCTGGCACCCT
GATGACCCCCCTTCGCCTCCTCGGTACTCTCCCGGCCCTCGTCTGCCGCT
ATTTCTCCAGACGGAAGCCTCCCGATGGCGACACCCTCGCCAGGCCCGAC
GCCGCACAACCAGACCGCAGCCCCCATGTCCGACGGGTATGCATCCAGCG
ACGACGACTTCGAAGACGACGACAACTTCTTCTACTTCCCGAGTGGCGAG
TTCGACGAGTCAGGCGCGACCCCCGCTCCTCGTGCTACTACTCCCGCTCC
CGTCACCGGCCGCTCGCAGCCCCACACTCCGATGCCGGCGGTGGCGGCTG
ACGAGGACGGGGAGGTCGACTGCTCGGCGCTCCTCTCTCCCGACATGTCG
GTGAGTCGAGTCAAACGCGGTCCAGCTGTTGCTGGTGTGCTTGCACAATG
CCGGTGATTTGTCTAGCATACTCGTCCCAAAGCTGTGGTACACCACCAGT
TTTCAAGCGCGGTGCTTTGCTACAGATGCATGCTCGAACCTCGTCACTAA
AGTTTTTTCGTCTCGATGACCTGCGATATATTTTACTTTTGCCCAGACGG
AGCTAGCCCAAAAGGACAAGGGTGTCTACTACGAGAAGGACTGCCAGGGC
CTCCACTGCAACATGTTCGGGATTAGCTGGGACTGCAGGGCCTGCTACAT
GGATTGCGTCGCCTGCGAGGGAGACCAGGAAGACCTGGGAACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15894:505..2847-

>mRNA_E-fasciculatus_F_contig15894.4039.1 ID=mRNA_E-fasciculatus_F_contig15894.4039.1|Name=mRNA_E-fasciculatus_F_contig15894.4039.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1782bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15894:505..2847- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCCGCCCCAACCGCTGCCGCCCCAACCGCCGCCGCCCCTACCGCTGCC
GCCCCAACCGCTGCCGCCCCAACTGCTGCCGCCCCAACTGCTGCCGCCCC
TACTGCTGCCGCCCCAACCGCTGTCGCCCCTGCCATGCCTTCGGCGCCTT
CTCCCACCATGCCTATGGCGCCTTCTCCCATCATGCCTTCGGCACCTTCT
CCCACGATGCCTAGCGCTCCAATGTCCATGTCCTACGATTTCGGCTTCGA
CGACTCAGCACCGGCGCCTGTGTCTGAGGCCCTGCAGCCGGCGGCTCGAA
CACAACCCGCAGCTGCGCCTACGTCGACTGCCGAGCCACCGGCCACCGAC
GCCGCCCCTCCCATGCCCTCGGCGCCTTCTCCCGCCATGCCGAGCACCCC
GACACCGTTGTCCTACGACTTCGATATCGACTACCCAACACCGGCGCCTG
TGTCCGAGGGCCTGCGGCCGTCGCCAACGGAAGCGCCTCGAACAGACCGC
GCCATGTCGCCCACATCGACTGCCGAGCCTCCGACCGCTGCCCCCGCTAT
GCCCTCGGCGCCTTCTCCGACCATGCCTTCGGTGCCTTCTCCCACAATGC
CGAGCGCCCCGACGTCCACCCCACCAACCGGTGTTGTCCAGGAGCCCGCA
ACGACTCCTGAGCCAATCTTCCAGCCGAGCGAGAGGGGGCCCGTGGCTCC
TACCTCCGCTGGTACTACCGCCGCACCTTCGACGCCGGGGGCACCGTGGA
CTCAAGCACCGGTCACCACAGGAGCGCAACCGCCAGTATCCGAGGGCGCC
TTCACCTGCCCGCCGCCCGTGCCCTGCATCTGCGAAGCGCCTGCGGAACC
CACGCCGGCGGCAGCGCCGACACCGGCAGCAGTACCGGTAACTCCCGCCC
CAACCGCTGCCGCCCCAACCGCCGCCGCCCCTACCGCTGCCGCCCCAACC
GCTGCCGCCCCAACTGCTGCCGCCCCAACTGCTGCCGCCCCTACTGCTGC
CGCCCCAACCGCTGTCGCCCCTGCCATGCCTTCGGCGCCTTCTCCCACCA
TGCCTATGGCGCCTTCTCCCATCATGCCTTCGGCACCTTCTCCCACGATG
CCTAGCGCTCCAATGTCCATGTCCTACGATTTCGGCTTCGACGACTCAGC
ACCGGCGCCTGTGTCTGAGGCCCTGCAGCCGGCGGCTCGAACACAACCCG
CAGCTGCGCCTACGTCGACTGCCGAGCCACCGGCCACCGACGCCGCCCCT
CCCATGCCCTCGGCGCCTTCTCCCGCCATGCCGAGCACCCCGACACCGTT
GTCCTACGACTTCGATATCGACTACCCAACACCGGCGCCTGTGTCCGAGG
GCCTGCGGCCGTCGCCAACGGAAGCGCCTCGAACAGACCGCGCCATGTCG
CCCACATCGACTGCCGAGCCTCCGACCGCTGCCCCCGCTATGCCCTCGGC
GCCTTCTCCGACCATGCCTTCGGTGCCTTCTCCCACAATGCCGAGCGCCC
CGACGTCCACCCCACCAACCGGTGTTGTCCAGGAGCCCGCAACGACTCCT
GAGCCAATCTTCCAGCCGAGCGAGAGGGGGCCCGTGGCTCCTACCTCCGC
TGGTACTACCGCCGCACCTTCGACGCCGGGGGCACCGTGGACTCAAGCAC
CGGTCACCACAGGAGCGCAACCGCCAGTATCCGAGGGCGCCTTCACCTGC
CCGCCGCCCGTGCCCTGCATCTGCGAAGCGCCTGCGGAACCCACGCCGGC
GGCAGCGCCGACACCGGCAGCAGTACCGGTAA
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