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Homology
BLAST of mRNA_E-fasciculatus_F_contig15887.4036.1 vs. uniprot
Match: D7FTP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP9_ECTSI) HSP 1 Score: 478 bits (1229), Expect = 2.770e-169 Identity = 234/257 (91.05%), Postives = 241/257 (93.77%), Query Frame = 1
Query: 1 MEQIRVKNGYGFLTSTLSASVIGDFDASSEKRKATNRAWNHKYDTDALFQMSQLQGNHPVRKVLHMQKCYPETVCRLNRQGRILKPDADRPTSSRWHRNPAPNNYNTSVAAPQRHRRPQSSLQAGRSPECGHELSGNTTRRRGEYEYQFCRDKMAYNRTKGREAEVDGILTGTSPLDKRLPLFPAKATHQQLLGLVHRPSHPDKPAPAVPRERKWLGDNVGWEGNRGLATPPAGRNAKDGEVHPWPSSQYPL-LPAG 768
MEQIRVKNGYGFLTSTLSASVIGDFDASSE+RKATNRAWN KYDTDA+FQM QLQGNHPVRKVLHMQKCYPETV RLNRQGR +PDADRP S RWHRNPAPNNYNTSVA QRHRRPQSSLQA RS + GHELSGNTTRRRG YEY FCRDKMAYNRT+GREAEVDGILTGTSPLDKRLPLFPAKATHQQLLGLVHRP+HPDKPAPAVPRERKWLGDNVGWEGNRG+ATPPAGRNAKDGEVHPWPSSQYPL LP G
Sbjct: 1 MEQIRVKNGYGFLTSTLSASVIGDFDASSEERKATNRAWNQKYDTDAVFQMRQLQGNHPVRKVLHMQKCYPETVFRLNRQGRTHEPDADRPISGRWHRNPAPNNYNTSVATQQRHRRPQSSLQADRSADGGHELSGNTTRRRGGYEYHFCRDKMAYNRTRGREAEVDGILTGTSPLDKRLPLFPAKATHQQLLGLVHRPTHPDKPAPAVPRERKWLGDNVGWEGNRGMATPPAGRNAKDGEVHPWPSSQYPLVLPTG 257
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-06_009320.2 |
| Exons | 4 |
| Model size | 868 |
| Cds size | 846 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15887.4036.1 >prot_E-fasciculatus_F_contig15887.4036.1 ID=prot_E-fasciculatus_F_contig15887.4036.1|Name=mRNA_E-fasciculatus_F_contig15887.4036.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=282bp
MGTGSSRPPSAHRSSGTSTRARRKERQPIELGTTNTTRTPCSKCRNCKET
TRCARSCTCKSATPRRSAASTDKAVYSNRTPTAQPAADGIETQPPTTTTL
PSPHHSVTGDHNRRSRQAVAPNAGMNCPETRRGDEGSTSTNSAATRWRTI
GPRGGKLRWTASSPERRLSTKGYPCSRRRRHTSSFWGWSIGRATRTSRPR
RSRGKGNGSATTWVGKEIEGWPLRRLGAMPKTGRFIRGRRRSTRFFRPVD
QATFAHLRSIFFAPKERLLSTHLREVSKRGVG back to topmRNA from alignment at E-fasciculatus_F_contig15887:867..2833- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig15887.4036.1 ID=mRNA_E-fasciculatus_F_contig15887.4036.1|Name=mRNA_E-fasciculatus_F_contig15887.4036.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1967bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15887:867..2833- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAACAAATACGTGTCAAAAATGGGTACGGGTTCCTCACGTCCACCCT
CAGCGCATCGGTCATCGGGGACTTCGACGCGAGCTCGGAGAAAAGGTGGG
TAGGTGCACGGAATGTGCATCACAGAGAATACATACATGTGCTGGTGTAG
TGGTGTCGAGCTTCGACATCGATTCAGGTGTGATCTCATCGGCCATCCTA
TGTGTGTATGCGCGTGTGCATTCTCGAAGCTCGCTATCTTTGGGCGTACA
CGACGCCATGCCAGGGGAAGAGATTGCACCTCCTTTTGACATGCGAGAGC
CAGGGGCACTGGCTAGCACACGTATGTAGAATGTAGACTGAATAGTAAAC
TGCGAAGTGTGTTTGTCCTACGCCATATTGTAGTCCTTCAGTTCCTTTGG
AGCTGTGAGAAATTGGGTGCGTTGTTTGTCTTCATATTGTGGTAGACTTG
TGCACGCATTGGTTGGACAAGGAGACAAGGGCATACGGGCGGAAGTCAGT
GCCGTATGGCTAACACGTACAACAATTCGCAAGGTATGTAATCATTGTAT
CACGAAGTGATGCACTTGGCGTCCGTGATTCCTCACACCGTCACCCAATT
GTATCCTAATGCGCAAGACCACAAACAAAAGATATGCAGAGAGGACGTTG
ATGTGCCCCCCCCTTCGTTCCCCCGGCATGTTCCTACCAAATATTATGAC
CTCCTCCCCTGCACGAGCTCGCAGAAAGGCAACCAATCGAGCTTGGAACC
ACAAATACGACACGGACGCCTTGTTCCAAATGTCGCAACTGCAAGGAAAC
CACCCGGTGCGCAAGGTCTTGCACATGCAAAAGTGCTACCCCGAGACGGT
CTGCCGCCTCAACAGACAAGGCCGTATACTCAAACCGGACGCCGACCGCC
CAACCAGCAGCAGATGGCATCGAAACCCAGCCCCCAACAACTACAACACT
TCCGTCGCCGCACCACAGCGTCACCGGCGACCACAATCGTCGCTCCAGGC
AGGCCGTAGCCCCGAATGCGGGCATGAACTGTCCGGAAACACGACGCGGA
GACGAGGGGAGTACGAGTACCAATTCTGCCGCGACAAGATGGCGTACAAT
CGGACCAAGGGGAGGTATGCAATCGCTTTCCGTTCTCTCCCTCACGCCTT
GTGCTTGAAAACCAATGCTAAAAAGCACAATGATGACCACTAGATTACCG
GTCGACGGCGGTTGAATGGAAATCCGGTTGTACTTCTGCGCCCAACAGCC
GACAATACCCTCCGAGAACGAGGAGCTGACCAAGCATCCAACTCGCTCGG
CTTCCTCTTCTTGACGGATGTGAGGTGCCACGCTGACGCTTTCGTCTTGC
ATACTGCTGCCAGGGAAGCTGAGGTGGACGGCATCCTCACCGGAACGTCG
CCTCTCGACAAAAGGCTACCCTTGTTCCCGGCGAAGGCGACACACCAGCA
GCTTCTGGGGCTGGTCCATCGGCCGAGCCACCCGGACAAGCCGGCCCCGG
CGGTCCCGAGGGAAAGGAAATGGCTCGGCGACAACGTGGGTTGGGAAGGT
GAGACTGTCTTCTTGCTGTGTTTCCCGAAACTCGGTGTTATGGTGCGCTG
GGAGCAAGGGTCACAGCACAAGCCCCCGAAAAGTGTCGTGGGCATGGCGC
TGTCCAGCACCCAGGCCGCCGAAACATCTCCCTCCTATGTCCTTGCTGAT
ATTTCGAGCTGTTCCATCTTCCGCGCGCATCTCTTCTCCTTCGAAACTTC
CCCCCCCCAAACGCGGCAGGAAATCGAGGGCTGGCCACTCCGCCGGCTGG
GCGCAATGCCAAAGACGGGGAGGTTCATCCGTGGCCGTCGTCGCAGTACC
CGCTTCTTCCGGCCGGTTGACCAAGCGACCTTTGCCCATTTACGGTCTAT
TTTTTTCGCCCCCAAAGAGCGATTACTCTCGACACATTTACGCGAGGTCT
CAAAGAGAGGAGTAGGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig15887:867..2833- >mRNA_E-fasciculatus_F_contig15887.4036.1 ID=mRNA_E-fasciculatus_F_contig15887.4036.1|Name=mRNA_E-fasciculatus_F_contig15887.4036.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1692bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15887:867..2833- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTACGGGTTCCTCACGTCCACCCTCAGCGCATCGGTCATCGGGGAC
TTCGACGCGAGCTCGGAGAAAAGATGGGTACGGGTTCCTCACGTCCACCC
TCAGCGCATCGGTCATCGGGGACTTCGACGCGAGCTCGGAGAAAAGAAAG
GCAACCAATCGAGCTTGGAACCACAAATACGACACGGACGCCTTGTTCCA
AATGTCGCAACTGCAAGGAAACCACCCGGTGCGCAAGGTCTTGCACATGC
AAAAGTGCTACCCCGAGACGGTCTGCCGCCTCAACAGACAAGGCCGTATA
CTCAAACCGGACGCCGACCGCCCAACCAGCAGCAGATGGCATCGAAACCC
AGCCCCCAACAACTACAACACTTCCGTCGCCGCACCACAGCGTCACCGGC
GACCACAATCGTCGCTCCAGGCAGGCCGTAGCCCCGAATGCGGGCATGAA
CTGTCCGGAAACACGACGCGGAGACGAGGGGAGTACGAGTACCAATTCTG
CCGCGACAAGATGGCGTACAATCGGACCAAGGGGAGAAAGGCAACCAATC
GAGCTTGGAACCACAAATACGACACGGACGCCTTGTTCCAAATGTCGCAA
CTGCAAGGAAACCACCCGGTGCGCAAGGTCTTGCACATGCAAAAGTGCTA
CCCCGAGACGGTCTGCCGCCTCAACAGACAAGGCCGTATACTCAAACCGG
ACGCCGACCGCCCAACCAGCAGCAGATGGCATCGAAACCCAGCCCCCAAC
AACTACAACACTTCCGTCGCCGCACCACAGCGTCACCGGCGACCACAATC
GTCGCTCCAGGCAGGCCGTAGCCCCGAATGCGGGCATGAACTGTCCGGAA
ACACGACGCGGAGACGAGGGGAGTACGAGTACCAATTCTGCCGCGACAAG
ATGGCGTACAATCGGACCAAGGGGAGGGAAGCTGAGGTGGACGGCATCCT
CACCGGAACGTCGCCTCTCGACAAAAGGCTACCCTTGTTCCCGGCGAAGG
CGACACACCAGCAGCTTCTGGGGCTGGTCCATCGGCCGAGCCACCCGGAC
AAGCCGGCCCCGGCGGTCCCGAGGGAAAGGAAATGGCTCGGCGACAACGT
GGGTTGGGAAGGGAAGCTGAGGTGGACGGCATCCTCACCGGAACGTCGCC
TCTCGACAAAAGGCTACCCTTGTTCCCGGCGAAGGCGACACACCAGCAGC
TTCTGGGGCTGGTCCATCGGCCGAGCCACCCGGACAAGCCGGCCCCGGCG
GTCCCGAGGGAAAGGAAATGGCTCGGCGACAACGTGGGTTGGGAAGGAAA
TCGAGGGCTGGCCACTCCGCCGGCTGGGCGCAATGCCAAAGACGGGGAGG
TTCATCCGTGGCCGTCGTCGCAGTACCCGCTTCTTCCGGCCGGTTGACCA
AGCGACCTTTGCCCATTTACGGTCTATTTTTTTCGCCCCCAAAGAGCGAT
TACTCTCGACACATTTACGCGAGGTCTCAAAGAGAGGAGTAGGGGAAATC
GAGGGCTGGCCACTCCGCCGGCTGGGCGCAATGCCAAAGACGGGGAGGTT
CATCCGTGGCCGTCGTCGCAGTACCCGCTTCTTCCGGCCGGTTGACCAAG
CGACCTTTGCCCATTTACGGTCTATTTTTTTCGCCCCCAAAGAGCGATTA
CTCTCGACACATTTACGCGAGGTCTCAAAGAGAGGAGTAGGG back to top
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