mRNA_E-fasciculatus_F_contig15881.4034.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15881.4034.1
Unique NamemRNA_E-fasciculatus_F_contig15881.4034.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15881.4034.1 vs. uniprot
Match: A0A6H5KDN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDN1_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 1.850e-106
Identity = 163/186 (87.63%), Postives = 168/186 (90.32%), Query Frame = 1 
Query:   13 RALFV-SGVLGGAAAIGVLGSSSPVSAAGFFTKDRMELEQVPTRTVVGKTQSISWADVAPKIAAMRAEAREHFAQTPGAEGGREFTTFSNQTPEGAEVTVGLEVSDAKGSPAVSNGFTASVISPPGQYLRDDHDGKPGMTPWISFMARLAKDGYTMEEPLAMFEVYSGQGGEESVTMYASVKGPAK 567
            RA F+  GVLGGAAAIGVLGS SPVSAAG FTKDRM LEQVP RTV+GKTQS SWADVAPKIAAMRAEAREHFAQTPGAEGGRE T FSNQ  E  +VTVGLEV DAKGSPA+SNGFTASVISPPGQYLRDDHDGKPG+TPWISFMARLAKDGYTM EPLAMFEVYSGQGGEESVTMY SV GPAK
Sbjct:   80 RAGFIRGGVLGGAAAIGVLGSPSPVSAAGLFTKDRMVLEQVPLRTVIGKTQSTSWADVAPKIAAMRAEAREHFAQTPGAEGGRELTAFSNQNAESVDVTVGLEVVDAKGSPAISNGFTASVISPPGQYLRDDHDGKPGVTPWISFMARLAKDGYTMTEPLAMFEVYSGQGGEESVTMYTSVNGPAK 265
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15881.4034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDN1_9PHAE1.850e-10687.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15881contigE-fasciculatus_F_contig15881:1287..2777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_003210.1
Exons3
Model size570
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15881.4034.1prot_E-fasciculatus_F_contig15881.4034.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15881 1287..2777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928055.002417-CDS-E-fasciculatus_F_contig15881:1286..14001622928055.002417-CDS-E-fasciculatus_F_contig15881:1286..1400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15881 1287..1400 +
1695995805.48371-CDS-E-fasciculatus_F_contig15881:1286..14001695995805.48371-CDS-E-fasciculatus_F_contig15881:1286..1400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15881 1287..1400 +
1622928055.0162609-CDS-E-fasciculatus_F_contig15881:1712..19081622928055.0162609-CDS-E-fasciculatus_F_contig15881:1712..1908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15881 1713..1908 +
1695995805.4926572-CDS-E-fasciculatus_F_contig15881:1712..19081695995805.4926572-CDS-E-fasciculatus_F_contig15881:1712..1908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15881 1713..1908 +
1622928055.0320985-CDS-E-fasciculatus_F_contig15881:2517..27771622928055.0320985-CDS-E-fasciculatus_F_contig15881:2517..2777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15881 2518..2777 +
1695995805.5019026-CDS-E-fasciculatus_F_contig15881:2517..27771695995805.5019026-CDS-E-fasciculatus_F_contig15881:2517..2777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15881 2518..2777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15881.4034.1

>prot_E-fasciculatus_F_contig15881.4034.1 ID=prot_E-fasciculatus_F_contig15881.4034.1|Name=mRNA_E-fasciculatus_F_contig15881.4034.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=190bp
MSVLRALFVSGVLGGAAAIGVLGSSSPVSAAGFFTKDRMELEQVPTRTVV
GKTQSISWADVAPKIAAMRAEAREHFAQTPGAEGGREFTTFSNQTPEGAE
VTVGLEVSDAKGSPAVSNGFTASVISPPGQYLRDDHDGKPGMTPWISFMA
RLAKDGYTMEEPLAMFEVYSGQGGEESVTMYASVKGPAK*
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mRNA from alignment at E-fasciculatus_F_contig15881:1287..2777+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15881.4034.1 ID=mRNA_E-fasciculatus_F_contig15881.4034.1|Name=mRNA_E-fasciculatus_F_contig15881.4034.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1491bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15881:1287..2777+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTGTCCTCCGCGCCCTGTTTGTTTCAGGCGTTCTGGGCGGAGCAGC
GGCGATTGGAGTCCTGGGGTCGTCGAGCCCCGTGTCTGCCGCAGGTTTCT
TCACCAAGGACCGGGTGAGTCGCGTCGAACCACCTCTACATACGTAGGTA
GCTGCAGCAGTTGTTTCCGTAATCGTGACGTTTTTGGCGGACCTGCAAGT
AGACATCCCCCCGCTGGGATTTTCCGGCCGGCAGTACCTTACAACACAGA
TAACGATAGAGGTGGAAGGGGAGGTTAAGGTCTCAAGGGGCCCAACACGT
TTGCCTGCCGGACAGCAACATGGTAACGCAACACATCGTACACAAGTGTG
CTGCGCCCACGACTCGTTGCAAGGATAATTTTACAACGCGAAACATGTCA
CGCCGCCTTGTTTTTTCCCTGCGAAGATGGAGCTGGAACAAGTTCCCACG
CGCACGGTGGTCGGCAAGACCCAGTCCATCAGCTGGGCGGACGTGGCTCC
CAAGATCGCCGCGATGCGCGCGGAGGCTCGCGAGCACTTCGCGCAGACCC
CCGGCGCTGAGGGCGGCCGCGAGTTCACCACGTTTTCCAACCAAACGCCT
GAAGGCGCGGAAGTCACCGTCGGTAAGGAGGGCTACTGCTGCTGTGGTAT
TTGTTGTTGTCACCGTGAAGGCTGTGTCTCATGCCACCATCCCCTCCGCC
TCCCGATCGCCAGAGAGGGCAAGGGTAGACGAAAAGCGTCTGTATTGCCT
GAGAGGGGGGCAAATCCACCACACGCGTGGTTCGCCACAATATTGCATGC
TTGCCGTGCTTCCTACATGAGAGTTGATTAGGCTAGTGCTCCCCGGTTAA
CTCGGTACAATCTCATTCCACCGATATCGCGGGATCAGATGGCCCGCCTC
ACGGAGGTATCTAGCGCATGCGGCAGGTGCAGTCTGTCGGGCCTGTGAGC
CGATCGTTTCCGCATTGTTTTGCGGTGCAAACCTGCGGCTTCCCCGTGGC
CCGGAGTGGTGTGCTACTGCTGTTGCGCGAGGAGGTAGATTGCCGCAGTT
GTCCCGCAATGTAGCGGGGGAAAACCAGAGCAGCTTGTATGATGCGTGTT
CGGGGGTGCACCGGTTGTGTCGACGTACCCCAAAACGCGAACGACATGGC
AAGTCGTTTCCCTCTCGCCGACGGCTGAAAAATAGCAAAAAAACACGGGC
GTTGGCTCTAATAATTGCACCGCACCCACAGGACTGGAGGTCAGCGATGC
CAAGGGTTCTCCCGCAGTCTCGAACGGTTTCACCGCCAGCGTAATCTCCC
CGCCGGGGCAGTACCTGCGGGACGACCACGACGGGAAGCCCGGCATGACT
CCCTGGATCTCGTTCATGGCGCGACTGGCGAAGGACGGGTACACCATGGA
GGAGCCCCTGGCGATGTTCGAGGTCTACTCCGGGCAGGGAGGAGAGGAGT
CGGTTACGATGTACGCCTCCGTTAAAGGCCCGGCCAAGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15881:1287..2777+

>mRNA_E-fasciculatus_F_contig15881.4034.1 ID=mRNA_E-fasciculatus_F_contig15881.4034.1|Name=mRNA_E-fasciculatus_F_contig15881.4034.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15881:1287..2777+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTGTCCTCCGCGCCCTGTTTGTTTCAGGCGTTCTGGGCGGAGCAGC
GGCGATTGGAGTCCTGGGGTCGTCGAGCCCCGTGTCTGCCGCAGGTTTCT
TCACCAAGGACCGGATGTCTGTCCTCCGCGCCCTGTTTGTTTCAGGCGTT
CTGGGCGGAGCAGCGGCGATTGGAGTCCTGGGGTCGTCGAGCCCCGTGTC
TGCCGCAGGTTTCTTCACCAAGGACCGGATGGAGCTGGAACAAGTTCCCA
CGCGCACGGTGGTCGGCAAGACCCAGTCCATCAGCTGGGCGGACGTGGCT
CCCAAGATCGCCGCGATGCGCGCGGAGGCTCGCGAGCACTTCGCGCAGAC
CCCCGGCGCTGAGGGCGGCCGCGAGTTCACCACGTTTTCCAACCAAACGC
CTGAAGGCGCGGAAGTCACCGTCGATGGAGCTGGAACAAGTTCCCACGCG
CACGGTGGTCGGCAAGACCCAGTCCATCAGCTGGGCGGACGTGGCTCCCA
AGATCGCCGCGATGCGCGCGGAGGCTCGCGAGCACTTCGCGCAGACCCCC
GGCGCTGAGGGCGGCCGCGAGTTCACCACGTTTTCCAACCAAACGCCTGA
AGGCGCGGAAGTCACCGTCGGACTGGAGGTCAGCGATGCCAAGGGTTCTC
CCGCAGTCTCGAACGGTTTCACCGCCAGCGTAATCTCCCCGCCGGGGCAG
TACCTGCGGGACGACCACGACGGGAAGCCCGGCATGACTCCCTGGATCTC
GTTCATGGCGCGACTGGCGAAGGACGGGTACACCATGGAGGAGCCCCTGG
CGATGTTCGAGGTCTACTCCGGGCAGGGAGGAGAGGAGTCGGTTACGATG
TACGCCTCCGTTAAAGGCCCGGCCAAGTAGGACTGGAGGTCAGCGATGCC
AAGGGTTCTCCCGCAGTCTCGAACGGTTTCACCGCCAGCGTAATCTCCCC
GCCGGGGCAGTACCTGCGGGACGACCACGACGGGAAGCCCGGCATGACTC
CCTGGATCTCGTTCATGGCGCGACTGGCGAAGGACGGGTACACCATGGAG
GAGCCCCTGGCGATGTTCGAGGTCTACTCCGGGCAGGGAGGAGAGGAGTC
GGTTACGATGTACGCCTCCGTTAAAGGCCCGGCCAAGTAG
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