mRNA_E-fasciculatus_F_contig1588.4033.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1588.4033.1
Unique NamemRNA_E-fasciculatus_F_contig1588.4033.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1588.4033.1 vs. uniprot
Match: A0A6H5JSG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG4_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 4.940e-43
Identity = 119/308 (38.64%), Postives = 166/308 (53.90%), Query Frame = 3
Query:  135 DDITAENDQAVIDMWWFASDIASTETDYYDHIAIYMSEEE--PTESTLSFLFVPYTRVESGVSETIYKHTELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVIGRLFLDMKQGSYSLTAVAEVNPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIVTRRRSLSVDSAPSTTSGVEQRPEWEAAFRGNTAAVPQFGGGNTAVPTWPPVPPVNDGAASTATRRASNDSSRNGSTSSALFRRTTSGFSDPHGXXXXXXXXRPVVRDMPRRGSKTG 1052
            D + + + +A I M W ASD A T T Y + +A+  S  +  P    +SF++VPY R  +          +LTIGKTTKK L G  TT FPAL +S++    + T   +S   + + +G L L ++QG +SLT+V EV+PLD+G+F GN+GGFWELLL+LWGL F ATR++R P+++AR+F   +Q  K+IV RRRSLSVDS  S     E+ P+  + F GN              P  PP P            R  N      ST+  +   + +  S P          RPVV D+PRRG + G
Sbjct:   49 DGVPSSDLRATISMNWLASDTADTATIYTEQVAVTASASDDLPEVEDISFVYVPYDRYTTADPIDELNTVDLTIGKTTKKMLDGSSTTVFPALTISTTTTVIQETSLPSSTYAE-YALGYLKLMVRQGPFSLTSVEEVSPLDVGSFFGNLGGFWELLLVLWGLLFFATRQDRTPQLRARNF---IQPLKEIVARRRSLSVDSGASIVQP-EELPQERSFFGGNHP------------PALPPRP------------RGGNTMPGGRSTAVGVSTMSPATLSSP------VSSQRPVVEDVPRRGWRIG 321          
BLAST of mRNA_E-fasciculatus_F_contig1588.4033.1 vs. uniprot
Match: D7FTW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW4_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.760e-26
Identity = 62/83 (74.70%), Postives = 68/83 (81.93%), Query Frame = 3
Query:  345 TIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDG-DDHVIGRLFLDMKQGSYSLTAVAEVNPLDIGTFLGNIGGFW 590
            TIGKTTKK L+GDVTTTFP LVLSSSDF  ENT  T+ DD   D   GRL+LD+KQG YS TA+AEV+PLDIGTFLGNIGGFW
Sbjct:  118 TIGKTTKKKLNGDVTTTFPPLVLSSSDFTAENTWATSEDDSFQDASFGRLYLDIKQGDYSRTAIAEVDPLDIGTFLGNIGGFW 200          
BLAST of mRNA_E-fasciculatus_F_contig1588.4033.1 vs. uniprot
Match: A0A6H5JY22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY22_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 7.100e-17
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 3
Query:  135 DDITAENDQAVIDMWWFASDIASTETDYYDHIAIYMSEEEPTESTLSFLFVPYTRVESGVSETIYKHTEL 344
            DDIT END+  IDMWW  SD+AS ETDY+DHI +YM+EEEPTEST SFL VPY+R+   V E IY   EL
Sbjct:  121 DDITTENDEVTIDMWWIQSDMASDETDYFDHIGMYMAEEEPTESTSSFLHVPYSRILPDV-EVIYTVAEL 189          
BLAST of mRNA_E-fasciculatus_F_contig1588.4033.1 vs. uniprot
Match: D7FTW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.720e-10
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  507 QGSYSLTAVAEVNPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDI-----VTRRRSLSVDSAPSTTSGVEQRPEWEAAFRGNTAAVPQFGGGNTAVPTWPPVPPVNDGAASTATRRASND 911
            QGSYS   + +++PLDIG  LGNIGGFW  +L+ + +FF     E+ P+++AR F  T + T+++      T   S S D++   T   EQ P+W     G          G + V T P +P + +   S   RR+SN+
Sbjct:    8 QGSYSFITIEDIDPLDIGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFY-TKRGTEEMRRRLSATSSTSKSPDASQGATEVREQLPDWADERNGGEGEAE----GKSEVET-PAIPSLKNPTPSMIRRRSSNE 141          
BLAST of mRNA_E-fasciculatus_F_contig1588.4033.1 vs. uniprot
Match: A0A6H5KZM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM8_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.750e-10
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  483 GRLFLDMKQGSYSLTAVAEVNPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIVTR-----RRSLSVDSAPSTTSGVEQRPEWE 779
            G L + + QGSYSL  + +++PLDIG  LGNIGGFW  +L+ + +FF     E+ P+++AR F  T + T +I+ R       S S D++   T   EQ P+WE
Sbjct:  169 GFLNIYVLQGSYSLIIIEDIDPLDIGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFY-TKRGTDEIIRRLSATSSTSKSPDASQGATEVREQPPDWE 271          
BLAST of mRNA_E-fasciculatus_F_contig1588.4033.1 vs. uniprot
Match: D7FU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU22_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 6.410e-10
Identity = 61/175 (34.86%), Postives = 90/175 (51.43%), Query Frame = 3
Query:  336 TELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVIGRLFLDMKQGSYSLTAVAEVNPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIV---TRR---------RSLSVDSAPSTTSGVEQRPE-WEAAFRGNTAAVPQFG 821
            T + IG T +  L  D T ++ AL +SS+ +  + T   T   G       L +++ Q + SL  + E+NPL+I    GN+GGFW+LLL+LW +FFI+   + +P +K R+F K+V    D V   TRR         R  + D   + T   E+RP  WE    G T  +P FG
Sbjct:   11 TYMGIGLTKEDKLYEDDTASYKALEISSALYKDKRTDNIT---GIASPYAWLSMEIAQSTDSLEEITEINPLEIAELFGNVGGFWDLLLLLWPIFFISASRQ-DPHLKGRNFKKSVTRGSDRVVDLTRRVNNATPYRVRRKAGDRKSNATDEDEERPPAWET---GGT--LPAFG 176          
BLAST of mRNA_E-fasciculatus_F_contig1588.4033.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 8.410e-10
Identity = 61/211 (28.91%), Postives = 105/211 (49.76%), Query Frame = 3
Query:  108 CASSMKKVADDITAENDQA---VIDMWWFASDIASTET-------DYYDHI-AIYMSEEEPTESTLSF-LFVPYTRVESGVSETIYKHTELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVIGRLFLDMKQGSYSLTAVAEVNPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIV 704
            C S      D +  E D     +++M+W+    A+  T       ++  H  +++M   +     LS  + V Y+ + S  S  ++  T + IG T +  L  D T ++ AL  SS+ +  + T   T   G       L +++ Q + SL  + E+NPL+I    GN+GGFW+LLL+LW +FFI+   + +P +K R+F K+V    ++V
Sbjct:  118 CVSFETSAVDIVDGERDPEDYILLNMYWYPGGTANASTTCISEEGEWESHSESVFMFLRDSDTGILSAGIQVAYSCMTSESSSHVF--TYMGIGLTKEDKLYEDDTASYKALETSSAIYKDKRTDNIT---GIASPYAWLSMEIAQTTDSLEEITEINPLEIAELFGNVGGFWDLLLMLWPIFFISASRQ-DPHLKVRNFKKSVTRGSEVV 322          
BLAST of mRNA_E-fasciculatus_F_contig1588.4033.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.510e-10
Identity = 66/235 (28.09%), Postives = 113/235 (48.09%), Query Frame = 3
Query:  156 DQAVIDMWWFASDIASTETD-----YYDHIA-IYMSEEEPTESTLSF-LFVPYTRVESGVSETIYKHTELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVI---GRLFLDMKQGSYSLTAVAEVNPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQT------TKDIVTRRRSLSVDSAPSTTSGVEQRPEWEAAFRGNTAAVP 812
            D  ++DM+W+   +    T      +  H   +Y+   +P    +S  + VPY+ + + VS + + HT + IG TT+  L  +      AL +S++         T  D+ +  ++    +L L ++Q   SL  + EV+PLD+    GN+GGFW+LL+I+W +FF+A   + +P +K R+F K+V          D   R      + +P     VE+RP WE   +     VP
Sbjct:  183 DYLLLDMYWYPGGLEVDSTTCVVEGWKTHKQWMYVFLNDPVLGQVSTGIQVPYSCI-TNVSSS-HSHTYVGIGVTTEDKLGQEPIVNNKALSVSTA---------TVKDEVNPAIVKPYAQLSLQVQQEPNSLEVITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQ-DPHLKPRNFKKSVNKGLGGLRVGDSTHRGARDDFNGSPP----VEERPYWEQEGKKEVVEVP 401          
BLAST of mRNA_E-fasciculatus_F_contig1588.4033.1 vs. uniprot
Match: A0A6H5JF84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF84_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-8
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  348 IGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGD-DHVIGRLFLDMKQGSYSLTAVAEVNPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKT 680
            IG T +   +GD+ +++ A+ ++S  +  +        DGD      RL +++KQ   S   + E +P +    LGNIGGFW+L+LILW LFF+A  +  EP +K R+F K+
Sbjct:   49 IGLTNQIKYTGDIISSYKAVSINSGVYKDQA-------DGDITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQP-EPNLKPRNFAKS 152          
BLAST of mRNA_E-fasciculatus_F_contig1588.4033.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.860e-8
Identity = 49/193 (25.39%), Postives = 95/193 (49.22%), Query Frame = 3
Query:  156 DQAVIDMWWFASDIASTETD-----------YYDHIAIYMSEEEPTESTLSFLFVPYTRVESGVSETIYKHTELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVI---GRLFLDMKQGSYSLTAVAEVNPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTT 692
            D  ++DM+W+ S   +T++            + + +  ++++ E      + + + Y+ + S  +  ++    + IG T +   + D  +++ A+ ++S  +          D  D  +     RL +++KQ   S   + E +P +    LGNIGGFW+L+LILW LFF+A  +  EP +K R+F K+V  T
Sbjct:  154 DYILLDMYWYPSGNETTDSTTCVEDGEEWEPHREWVYAFLTDPEDVTMVSTAVQLSYSCITSASTSHVFN--SVGIGLTNQIKYAADDVSSYKAVSINSGVY---------KDQADADITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQP-EPNLKPRNFAKSVTRT 334          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1588.4033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JSG4_9PHAE4.940e-4338.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTW4_ECTSI1.760e-2674.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JY22_9PHAE7.100e-1765.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTW9_ECTSI2.720e-1034.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZM8_9PHAE2.750e-1040.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU22_ECTSI6.410e-1034.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU23_ECTSI8.410e-1028.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K474_9PHAE8.510e-1028.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF84_9PHAE1.070e-835.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXH8_ECTSI1.860e-825.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1588contigE-fasciculatus_F_contig1588:7596..14004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size2317
Cds size1038
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.8452005-UTR-E-fasciculatus_F_contig1588:7595..87971622928054.8452005-UTR-E-fasciculatus_F_contig1588:7595..8797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1588 7596..8797 -
1695995805.363944-UTR-E-fasciculatus_F_contig1588:7595..87971695995805.363944-UTR-E-fasciculatus_F_contig1588:7595..8797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1588 7596..8797 -
1622928054.957956-UTR-E-fasciculatus_F_contig1588:13558..135591622928054.957956-UTR-E-fasciculatus_F_contig1588:13558..13559Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1588 13559..13559 -
1695995805.463938-UTR-E-fasciculatus_F_contig1588:13558..135591695995805.463938-UTR-E-fasciculatus_F_contig1588:13558..13559Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1588 13559..13559 -
1622928054.9689837-UTR-E-fasciculatus_F_contig1588:13928..140041622928054.9689837-UTR-E-fasciculatus_F_contig1588:13928..14004Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1588 13929..14004 -
1695995805.4754112-UTR-E-fasciculatus_F_contig1588:13928..140041695995805.4754112-UTR-E-fasciculatus_F_contig1588:13928..14004Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1588 13929..14004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.8639235-CDS-E-fasciculatus_F_contig1588:8797..89531622928054.8639235-CDS-E-fasciculatus_F_contig1588:8797..8953Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 8798..8953 -
1695995805.3723314-CDS-E-fasciculatus_F_contig1588:8797..89531695995805.3723314-CDS-E-fasciculatus_F_contig1588:8797..8953Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 8798..8953 -
1622928054.8763347-CDS-E-fasciculatus_F_contig1588:9214..95821622928054.8763347-CDS-E-fasciculatus_F_contig1588:9214..9582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 9215..9582 -
1695995805.3835077-CDS-E-fasciculatus_F_contig1588:9214..95821695995805.3835077-CDS-E-fasciculatus_F_contig1588:9214..9582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 9215..9582 -
1622928054.8869104-CDS-E-fasciculatus_F_contig1588:10414..105651622928054.8869104-CDS-E-fasciculatus_F_contig1588:10414..10565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 10415..10565 -
1695995805.3981152-CDS-E-fasciculatus_F_contig1588:10414..105651695995805.3981152-CDS-E-fasciculatus_F_contig1588:10414..10565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 10415..10565 -
1622928054.8968818-CDS-E-fasciculatus_F_contig1588:11097..111931622928054.8968818-CDS-E-fasciculatus_F_contig1588:11097..11193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 11098..11193 -
1695995805.4072986-CDS-E-fasciculatus_F_contig1588:11097..111931695995805.4072986-CDS-E-fasciculatus_F_contig1588:11097..11193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 11098..11193 -
1622928054.9067733-CDS-E-fasciculatus_F_contig1588:11955..120791622928054.9067733-CDS-E-fasciculatus_F_contig1588:11955..12079Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 11956..12079 -
1695995805.4175189-CDS-E-fasciculatus_F_contig1588:11955..120791695995805.4175189-CDS-E-fasciculatus_F_contig1588:11955..12079Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 11956..12079 -
1622928054.9175363-CDS-E-fasciculatus_F_contig1588:12563..126101622928054.9175363-CDS-E-fasciculatus_F_contig1588:12563..12610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 12564..12610 -
1695995805.4286377-CDS-E-fasciculatus_F_contig1588:12563..126101695995805.4286377-CDS-E-fasciculatus_F_contig1588:12563..12610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 12564..12610 -
1622928054.9313898-CDS-E-fasciculatus_F_contig1588:12994..130321622928054.9313898-CDS-E-fasciculatus_F_contig1588:12994..13032Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 12995..13032 -
1695995805.440693-CDS-E-fasciculatus_F_contig1588:12994..130321695995805.440693-CDS-E-fasciculatus_F_contig1588:12994..13032Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 12995..13032 -
1622928054.946105-CDS-E-fasciculatus_F_contig1588:13500..135581622928054.946105-CDS-E-fasciculatus_F_contig1588:13500..13558Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 13501..13558 -
1695995805.453753-CDS-E-fasciculatus_F_contig1588:13500..135581695995805.453753-CDS-E-fasciculatus_F_contig1588:13500..13558Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 13501..13558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1588.4033.1prot_E-fasciculatus_F_contig1588.4033.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1588 8798..13558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1588.4033.1

>prot_E-fasciculatus_F_contig1588.4033.1 ID=prot_E-fasciculatus_F_contig1588.4033.1|Name=mRNA_E-fasciculatus_F_contig1588.4033.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=346bp
MTSTLIHTWRCASSMKKVADDITAENDQAVIDMWWFASDIASTETDYYDH
IAIYMSEEEPTESTLSFLFVPYTRVESGVSETIYKHTELTIGKTTKKDLS
GDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVIGRLFLDMKQGSYSLT
AVAEVNPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGK
TVQTTKDIVTRRRSLSVDSAPSTTSGVEQRPEWEAAFRGNTAAVPQFGGG
NTAVPTWPPVPPVNDGAASTATRRASNDSSRNGSTSSALFRRTTSGFSDP
HGDSSSANFRRPVVRDMPRRGSKTGGNLPEEQPRAPPSYAEMSAN*
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mRNA from alignment at E-fasciculatus_F_contig1588:7596..14004-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1588.4033.1 ID=mRNA_E-fasciculatus_F_contig1588.4033.1|Name=mRNA_E-fasciculatus_F_contig1588.4033.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6409bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1588:7596..14004- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACCGCAGATACGATATGGCAAATCTGGAAAATACTCGACGAGCTGGCAA ATCCGAGCACCAGTCTCAAGATCACGGTGAGGACATGCATGCGTGCCTCC AACATGGTCATCTCTTGTTCTCGTACCGGTTTTGGATGAAACCAACCCAA CGGGTTTCAACGTTTGTTTGAAAATGGCAAATGACTGCCTTGCGTGGTGT CTACGGCCTGCGCTATGATTTGTGAGAGAAGCGTCGTGCTGCTTTCTCCA TCCACCTCTTCTTCATCCTGCTTCGTCATCCGATAATTGGTTTGATATGT AGATCCCATTTTCTTCTAAAAAAACGTCTGGGTTGCCATTTTCCCAATCA GCTGGTTGGTGGGCACGTCCTGTTCCCGCTCCCACCTCACCGGTGCCCCT GCCGTTGCACCCTTCGCCGCCGCTGTTGGTGCCACCGCCGTGCAGAATGA CCTCTACGCTTATCCATACGTGGAGGTGTGCTTCTTCCATGAAGAAGGTT GCGGGTTTGCGGACGGGAGCACGGATTACTGCAGGCAAAGCGCCTTGTTT GAGGGCTTCTCGACAGTTTACTTTGGGGAAGACTTCGACTCCTTTGACGA CCTCGTCGTGGAATCCCAGGTGAGGTTGTCAAAGAAGGAGGCTTGGATGT TTCTCTGGTCTTGAAAGATGTGAGGAAGGTCACCACGTAGACGACCTAGT CGATGCAAGGCCGGATGGATCTAGATTTGGATTACCGTGCCCCGAACATT CGTCCTGAATCTTGTTCCTTTTCAGGGGTGTTCAATGGCAGGAACGAATC CCATGGTGATGCTGCTGTCGGCGCTTGCTTGCTCACCAAGCGCAATATCA CGGATAGGTGGTTCACTTCGGGTGATGTTTGCTCGCTTGATACCTCCCTT GCCCCCGACACGCCGCGCCTTCTCAGTGGAGCAATTGTGTCGGCTTCGAT CTGGGCCGCCTCGAGTTTGGAGATGACATCACCGCGGAGAACGATCAAGC AGTAATCGATGTACGTGTGAAGGCACAGAACGATGTGCCTCCTACCCTTA AAGTGCGAAAGTACGTGCAACGCGTGTTTCTTCGCCTGTACTCGCAGGGT TTTTGGAAAAATATCAAAGGAAGCGATCACCTACAATATTCCAAGAGCCC CGTGAACCCGAAAACCCAGAACCCGAAACTCGTGGTGATTCGCCTCCACC TACGTCGAAGCACACTTGGCTTAACGCGACGGAAACGACAACGATACATG GCTTGACCCGGTTCGCGGTGGGGGCACCGAGCCGTTTGGTAGCCTTGCGT CATTCCATATATGAACCGTTGCTCGTGGTGACTAGCAACCTTACAACACA CCCTCTGTGTTTGCCGCCGCGCCCCCTGCGTTTTTCGTATGCAGATGTGG TGGTTCGCATCTGACATCGCATCTACTGAGACCGACTATTAGTGAGTGGT GGCGTTACTCGTTGTGAGCGCAGGAAGCGCGCTGCTGTAGCCTTTTTCGC TAGGGATCACCGTTTTCACCAAATGAGGAATTACTACATGTATCTGAGGT TGTTCTGTGGCGTTCTCCGGCCGGAACAGTGGCCTCTACTCGTTGGCCGA CCGCGAGGTCGACCCGCGTTCTTTTGAGTAAAATGTACCATCTCCTTAGC TGCAAGGATGCTTCTCCGTCTCCTCAATGTTGCTCAGCTCTCAATTCTTC GGACGACGAGTAGCTTTCGCTAAAAAATGGTGGGAGTACGATTTCGTGTC ATTTTTTAGTCCGATGTTTGAACTCGTCCACGGTGCGTGCGCCTCCCCTT ATCTCATCGGCCTGGCATCGTTTGTCTCATGTCGTCTTCCTGTCGACCGC TGGCCTGGTATCGTCGTTGCTGTTGTTGTTGCTGCTACTGCTACTCTTGG TGTTGTTGTCGATGCTTTCACTCAGCGATCACATTGCGATCTACATGTCG GAAGAGGAGCCCACGGAGAGCACTTTGTCCTTCCTGTTCGTGCCGTACAC CCGAGTGGAGTCTGGTGTCAGCGAGACCATCTATAAGCATACAGAACTGG TACGATACTGCTTTTGCCGCTGTTGGGAACTACTTGTAGGCATACCGTCT GGTTCATAGCATACCGTCTGGTTCATCTATAGACTAGGCTACTAAATCTA CCGCGACATGCTATTATCTACTGCGAATTCCGGAATATACGGAGACCTTC AACAACGGGTATTTCTAATTTGGCTGTCGATCCTGCGGATTCTCCTTGCT TCGACAACTAGTTTGAGCCGCGGATGTCTGTGTGGACTTTAGCAGATGTT ACTGTAGCAGGTCCGGAATGGTTGTTTGGCTACATGCCGTGCTTTGCAGC ACGCTGACCCTGTCCCTGGATCGTCGCTGGCAAAGTGCTGGGAGTTGGAA ATGATCTTCGGACGGACAAAGCGCCTTGGTATAAGCTAGGCCCCGTGGCT GAAACCATCGTCAGCGGCCGCGCACGCTAGGGTGGGAGATCTCGTGTGCG TTTTCGCCGCGTCCAACGTCCAACAAACACCAACGCTTTTTGCATCTTGC CCTTACCATAGTCCCCTTGCCCTCCGAGCTTCGCATGGAATGTGTCGCAC GTCACCTTTCCGTAGAAACGGCTTTAGTTCGTGGACAATGGTATGTCATT GTGGTACCGTTTGGGTTGCTGCTGGCTGTCGGAAGAACCATCCACCGTTC CCGGGCGCAATGATATATATCTGTAGATGTGCCAGTGTTGCATGTGTTCG GTGCAGATTTCCAATGGGCTTGTCTCTCTTGTTCCACTCTGGCTCGCATG TGTTCCCGCAGACCATCGGCAAGACCACGAAAAAGGACCTCAGTGGAGAC GTGACGACCACCTTCCCCGCCCTCGTCCTGTCGTCGTCTGACTTTTTCAC GGAAAATGTGAGCAGGGAAGGGGCGACGCATGCCTGGGTGCGCCCTTTCA CGCTCGAAATCCTTGGCCTTGGTCTGACGCCTTTCATGTGCTCTTTTCCA CAGGAGCAGGTAGCGTTTGTACTTTAAGCCGACCTGGCTTTCGCGCCATC CAAAAGCTCGATGTGTCGACGGTGCTTGTTTGATGTCTTCATATGTTCTA CTCGTGGGTCTCGTCCAGCTGTACTTCTTACCTTTGACTGCACCGAATGC GAGGAAGGCGTCTCCCTAATACCATATCATCAAAGTTTGCCCAAAGCTTG TACCATGGTATGTGCCAGCGATAAAGTCTTGGTATCCACGGGCTGTGAGC GGCGTGTTGTTGGATGGGCTCGAATTCTGCCCATAGAACCTTGGCCGAGA TCCTCATGACCCCCTCCCCACTCTAATTCTCCGCTTGATGTTGCTGTCTC TCTCTCTCTTCGCCCCCACTGTGGATTTGCTACCGCCCGCTTTTGCCCCT TTCCTGCAATCTTCGTTTCTCTCAACACTCCGCGCGCAGACTTTGACGAC AACGTCGGATGATGGCGATGACCACGTTATCGGCAGACTATTTCTCGATA TGAAGCAAGGATCTTACTCACTTACCGCCGTCGCCGAGGTCAACCCGTTG GATATTGGCACCTTTCTCGGCAACATCGGTGGATTCTGGGGTAGGTGGCG GCGAATGACATAACGGCCACTACGTGGTTGTGGAGGTGGTGACCCCAAAC GCTTGAAGGGACGCGATTTCCCCGAACGAACGGCCTTGATGTTTAGCAAG TCGTAAGACGCCAATTATGCATCTGAACCTCAGCGAAACCGCTTCATCGA TGATTTTGCACCGGAGACGGAGAGACAGGAATGGGGGTGGCGCCAAGCTG GGAACGTTTCGCGACTCCCCAGAACTCTGTCCATTCCCTGGTTTCGCTTG AAAAATCCATCCTTACCGGCGTATCGGCTATGACGTTTGGGCGTAACCAA CAAGGGCATCGGAATCCCCCCTCCCTAAGCTGCGTCTTAGATGCATCTCT TTGCGCTGTTTCTTTGATCGATCGTGTCTTCGTCGTGAACAGTGATTGTA GCCTGGCAGAAACAATCGACGGGGCCACCTGCATGGTGTGGACACCCATC GTTTATTCATCATAGGTGTCACAAGCGTGATCCCACAAAGTGCGGTTCCC TCCGTGATCAATATATCTGGTGTTGTCCCAATGCATTCCGCACTGTATAT TTTACGATCATACCAATTAATTAGTGGCCGTCAGAACCCGATCAGTGCTG CAACAGTGAATGTGAATGGCTTAACTTATCGTGCAAGAAATATTTCGTGC CCGTTCAGTGCACCCATACCCTTAGCATCAACCTCACTTGATGTGTATGC TGAGTCTCTTACCAAATCAGTTCTCGACAGAACTCATCCTCACCGCCATT GCCAAAAACCTATGCTCCTCACCCTTTATCCCCTGTGTCATTGGCGTTTC TGTTTCTTCCTGCACCCTGCAGAACTGCTGCTCATTTTGTGGGGGCTCTT CTTCATCGCCACACGGGAGGAACGTGAACCAAAGATGAAGGCTCGCGACT TCGGCAAGACAGTCCAGACCACCAAGGACATTGTGACCAGGCGCAGGAGC CTTTCTGTAGACTCTGCTCCTTCTACGACTTCGGGCGTAGAACAGCGGCC TGAATGGGAAGCCGCATTCCGAGGCAACACCGCCGCCGTCCCCCAGTTCG GCGGAGGTAACACGGCCGTTCCCACCTGGCCTCCTGTGCCTCCCGTGAAC GACGGTGCCGCAAGCACCGCCACTCGCCGAGCTTCCAACGACAGCAGCCG CAATGGCAGCACGAGCAGTGCTCTATTTCGCCGCACTACGGTGAGCTAGG GCGAGAGGGTGACGTTGCTTTCGTGAATCGACGATGCTTTCGTTCATTTG TCCTGGTGCTTGGACTGAACCCAAAGGAGCCTTAACTGGTATTCCAGGTG CTCCGGCGACTTTCCAGCTCGCGCTCAATTTGTTCTGCGTTCTTGTATTG GTGAACACAATGAGCACGGCCTGTTCTTCCCACCTCAACACGTCCTTGTC CCCCCTCTGATGACCATTGCCTCCCACGTCGGTGCCCTATCGTAATACCA GAGTGGGTTTTCTGACCCCCACGGTGATTCCTCGAGCGCCAACTTCAGGC GTCCGGTGGTGCGAGACATGCCCAGGCGGGGGTCGAAAACTGGCGGCAAT CTTCCGGAAGAACAACCCCGCGCCCCCCCAAGCTACGCTGAGATGTCCGC CAATTAGAGCAAGGTCTTTCCGTCCGAGGATGCAGACGATTGTAAACCCA ACCTGCCTCAATGTCCATATCAAACCGTACTTGTGGCGGCGTACGGTGTG GCGGATGACCCCGTAGATTGACCTATAACGATGGGGGTCAACCTTTGAGT GTATGAACGCCAGAGCAATCTCAGCGGCAGCAATAATTCCTCTTCTCAAT GGCCGCCTTGACGACGCTATGTTGATTAATTTGTGAGTTTTGTGAGACGT TTTCATATTCCCGGTGTCAACTTTGTTCAGGGTAGTGCTCAGGATGGTGC GTCACATCATAATGCGTCGCCCAAGTCAGTCTCATCTGCTTTTTGGAACG TGCACCGAAGCGAGGGAGGCATGTAAAAGCTGCCGCAGGTAGTCTCCGTT TTTGTAAGATTGTTCACAGGCTTGATCATTCTTCAGCTGACAGAAGTTTA TAGAAAATGCCGGTGGATCGTCTGTCGTTGGCGTATCCCTAGCTGCCGTG TCGCGGCCATTTAGAATCCGCCATGTAGTTATTTATTATCGTGGGTACAC ACGTGTACCAAATGTTTTTTGGCATGTTGCTAGTGGGTCCATTATAAGTA TACTTTTTACTACTGATAGGTGTATATCTGGCTCGTTGTTGTTGGCTCTC TTTGTGTAACAATTGAGCAGAGGTTTGCGTAGGGGGGAAACAAAGTATTT GGCTCTTTCTTCGCTTGATCTAGTTGTGTGGATGCAAGTGTTGCCTTCGG CACCTCTGTCCGTGTATAAAAAAACCTCAGCAGGTAGAGTGTCCGCCACT GTGGGCGTGAACCAGAGACTGCACAGTAGGAAGAAGGCACGCACTCACTG TAGGTGTTTCAGATAATTATTGTAGTATTGTTGAAAGCAAGCACGACCAA TATCGTCGGCGTTGTTAGTCCCAAGCTGTTTTTATTTGTTTTAGTCGCGT AGTGCGTGTCCCACACGACGAACGAGAAGGACCTTAACTAGCCGACACAC AACGCAATAACGGTCGTGATGGACGCGGGCACGCAATAAAAATACAACAC GTCGGATCGTCGGGAAACACGAAATGCAAGTTCTACAGTACTTTAGAGAC AGGAAGACAAACAACTATACAACAAATCGGATCCCGGGCAACACGAAATG CAACTTCTATAGTAAAGACAGGAAGACAAACAACTAGGAAGTTCGGCCCG AGGGACTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1588:7596..14004-

>mRNA_E-fasciculatus_F_contig1588.4033.1 ID=mRNA_E-fasciculatus_F_contig1588.4033.1|Name=mRNA_E-fasciculatus_F_contig1588.4033.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2076bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1588:7596..14004- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACCTCTACGCTTATCCATACGTGGAGGTGTGCTTCTTCCATGAAGAA
GGTTGCGGATGACCTCTACGCTTATCCATACGTGGAGGTGTGCTTCTTCC
ATGAAGAAGGTTGCGGATGACATCACCGCGGAGAACGATCAAGCAGTAAT
CGATATGACATCACCGCGGAGAACGATCAAGCAGTAATCGATATGTGGTG
GTTCGCATCTGACATCGCATCTACTGAGACCGACTATTAATGTGGTGGTT
CGCATCTGACATCGCATCTACTGAGACCGACTATTACGATCACATTGCGA
TCTACATGTCGGAAGAGGAGCCCACGGAGAGCACTTTGTCCTTCCTGTTC
GTGCCGTACACCCGAGTGGAGTCTGGTGTCAGCGAGACCATCTATAAGCA
TACAGAACTGCGATCACATTGCGATCTACATGTCGGAAGAGGAGCCCACG
GAGAGCACTTTGTCCTTCCTGTTCGTGCCGTACACCCGAGTGGAGTCTGG
TGTCAGCGAGACCATCTATAAGCATACAGAACTGACCATCGGCAAGACCA
CGAAAAAGGACCTCAGTGGAGACGTGACGACCACCTTCCCCGCCCTCGTC
CTGTCGTCGTCTGACTTTTTCACGGAAAATACCATCGGCAAGACCACGAA
AAAGGACCTCAGTGGAGACGTGACGACCACCTTCCCCGCCCTCGTCCTGT
CGTCGTCTGACTTTTTCACGGAAAATACTTTGACGACAACGTCGGATGAT
GGCGATGACCACGTTATCGGCAGACTATTTCTCGATATGAAGCAAGGATC
TTACTCACTTACCGCCGTCGCCGAGGTCAACCCGTTGGATATTGGCACCT
TTCTCGGCAACATCGGTGGATTCTGGGACTTTGACGACAACGTCGGATGA
TGGCGATGACCACGTTATCGGCAGACTATTTCTCGATATGAAGCAAGGAT
CTTACTCACTTACCGCCGTCGCCGAGGTCAACCCGTTGGATATTGGCACC
TTTCTCGGCAACATCGGTGGATTCTGGGAACTGCTGCTCATTTTGTGGGG
GCTCTTCTTCATCGCCACACGGGAGGAACGTGAACCAAAGATGAAGGCTC
GCGACTTCGGCAAGACAGTCCAGACCACCAAGGACATTGTGACCAGGCGC
AGGAGCCTTTCTGTAGACTCTGCTCCTTCTACGACTTCGGGCGTAGAACA
GCGGCCTGAATGGGAAGCCGCATTCCGAGGCAACACCGCCGCCGTCCCCC
AGTTCGGCGGAGGTAACACGGCCGTTCCCACCTGGCCTCCTGTGCCTCCC
GTGAACGACGGTGCCGCAAGCACCGCCACTCGCCGAGCTTCCAACGACAG
CAGCCGCAATGGCAGCACGAGCAGTGCTCTATTTCGCCGCACTACGAACT
GCTGCTCATTTTGTGGGGGCTCTTCTTCATCGCCACACGGGAGGAACGTG
AACCAAAGATGAAGGCTCGCGACTTCGGCAAGACAGTCCAGACCACCAAG
GACATTGTGACCAGGCGCAGGAGCCTTTCTGTAGACTCTGCTCCTTCTAC
GACTTCGGGCGTAGAACAGCGGCCTGAATGGGAAGCCGCATTCCGAGGCA
ACACCGCCGCCGTCCCCCAGTTCGGCGGAGGTAACACGGCCGTTCCCACC
TGGCCTCCTGTGCCTCCCGTGAACGACGGTGCCGCAAGCACCGCCACTCG
CCGAGCTTCCAACGACAGCAGCCGCAATGGCAGCACGAGCAGTGCTCTAT
TTCGCCGCACTACGAGTGGGTTTTCTGACCCCCACGGTGATTCCTCGAGC
GCCAACTTCAGGCGTCCGGTGGTGCGAGACATGCCCAGGCGGGGGTCGAA
AACTGGCGGCAATCTTCCGGAAGAACAACCCCGCGCCCCCCCAAGCTACG
CTGAGATGTCCGCCAATTAGAGTGGGTTTTCTGACCCCCACGGTGATTCC
TCGAGCGCCAACTTCAGGCGTCCGGTGGTGCGAGACATGCCCAGGCGGGG
GTCGAAAACTGGCGGCAATCTTCCGGAAGAACAACCCCGCGCCCCCCCAA
GCTACGCTGAGATGTCCGCCAATTAG
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