mRNA_E-fasciculatus_F_contig1588.4032.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1588.4032.1
Unique NamemRNA_E-fasciculatus_F_contig1588.4032.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1588.4032.1 vs. uniprot
Match: D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 7.130e-34
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 MGVAYYLVGVSYHVAHGGSRKNHFVTQLRVRGRWHKYDCLAGGSVTSSDTFDDDWNSSSQ 180
            MG AY LVGVSYH+AHGGSRKNHFVTQLRVRGRWHKYDCLAGG++TSSDTFD DWNSSSQ
Sbjct:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQ 60
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BLAST of mRNA_E-fasciculatus_F_contig1588.4032.1 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.360e-32
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 MGVAYYLVGVSYHVAHGGSRKNHFVTQLRVRGRWHKYDCLAGGSVTSSDTFDDDWNSSSQ 180
            MG AY LVGVSYH+AHGGSRKNHFVTQLRVRGRWHKYDCLAGG+VTS+DTFD DWNSSSQ
Sbjct:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSSQ 60
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BLAST of mRNA_E-fasciculatus_F_contig1588.4032.1 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.680e-14
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 MGVAYYLVGVSYHVAHGGS-RKNHFVTQLRVRGRWHKYDCLAGGSVTSSDTFDDDWNSSS 177
            MGV Y LVG+S  +A GG   +NHFV+Q+ +RGRWHK DCL GG VTSSD F   W+ SS
Sbjct:  102 MGVTYSLVGISCFLALGGGPNRNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSS 161
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BLAST of mRNA_E-fasciculatus_F_contig1588.4032.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 5.530e-5
Identity = 20/28 (71.43%), Postives = 22/28 (78.57%), Query Frame = 1 
Query:   94 GRWHKYDCLAGGSVTSSDTFDDDWNSSS 177
            GRWHKYDCL GG VTSSD +D  W+ SS
Sbjct:  576 GRWHKYDCLQGGIVTSSDAYDSGWHVSS 603
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1588.4032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSJ9_ECTSI7.130e-3490.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7U5_ECTSI2.360e-3290.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDI5_9PHAE7.680e-1460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV6_9PHAE5.530e-571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1588contigE-fasciculatus_F_contig1588:7067..7246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.804935-CDS-E-fasciculatus_F_contig1588:7066..72461622928054.804935-CDS-E-fasciculatus_F_contig1588:7066..7246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 7067..7246 +
1695995805.3488126-CDS-E-fasciculatus_F_contig1588:7066..72461695995805.3488126-CDS-E-fasciculatus_F_contig1588:7066..7246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1588 7067..7246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1588.4032.1prot_E-fasciculatus_F_contig1588.4032.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1588 7067..7246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1588.4032.1

>prot_E-fasciculatus_F_contig1588.4032.1 ID=prot_E-fasciculatus_F_contig1588.4032.1|Name=mRNA_E-fasciculatus_F_contig1588.4032.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=60bp
MGVAYYLVGVSYHVAHGGSRKNHFVTQLRVRGRWHKYDCLAGGSVTSSDT
FDDDWNSSSQ
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mRNA from alignment at E-fasciculatus_F_contig1588:7067..7246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1588.4032.1 ID=mRNA_E-fasciculatus_F_contig1588.4032.1|Name=mRNA_E-fasciculatus_F_contig1588.4032.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=180bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1588:7067..7246+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGTTGCATATTACTTGGTCGGCGTATCTTACCATGTTGCGCATGG
TGGGTCGCGGAAGAACCACTTCGTCACTCAACTGCGTGTCAGAGGAAGGT
GGCACAAGTATGACTGCCTGGCGGGAGGATCCGTAACTTCTTCAGACACC
TTCGATGACGACTGGAACAGCTCGTCCCAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1588:7067..7246+

>mRNA_E-fasciculatus_F_contig1588.4032.1 ID=mRNA_E-fasciculatus_F_contig1588.4032.1|Name=mRNA_E-fasciculatus_F_contig1588.4032.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=360bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1588:7067..7246+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGTTGCATATTACTTGGTCGGCGTATCTTACCATGTTGCGCATGG
TGGGTCGCGGAAGAACCACTTCGTCACTCAACTGCGTGTCAGAGGAAGGT
GGCACAAGTATGACTGCCTGGCGGGAGGATCCGTAACTTCTTCAGACACC
TTCGATGACGACTGGAACAGCTCGTCCCAAATGGGGGTTGCATATTACTT
GGTCGGCGTATCTTACCATGTTGCGCATGGTGGGTCGCGGAAGAACCACT
TCGTCACTCAACTGCGTGTCAGAGGAAGGTGGCACAAGTATGACTGCCTG
GCGGGAGGATCCGTAACTTCTTCAGACACCTTCGATGACGACTGGAACAG
CTCGTCCCAA
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