mRNA_E-fasciculatus_F_contig15872.4030.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15872.4030.1
Unique NamemRNA_E-fasciculatus_F_contig15872.4030.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15872.4030.1 vs. uniprot
Match: D7G6M1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M1_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 3.520e-80
Identity = 132/151 (87.42%), Postives = 136/151 (90.07%), Query Frame = 1 
Query:    1 KGDGGWDSAVAAAENTHLDLGGLNEGILSLAWLPGADSVLLAGTGFKSLKSIDVRGRGDDALRSADSSNIVVRTMEAHKGTVSGIAVLPEDPRIVATWSDTVGEPVKLWKSRSLLGRNAGGGNVKGRDASQSSNPVATLRPPDKTSFVVDV 453
            KGDGGWDSAVAAAEN H DLGG NEG  SLAWLPG DSVLLAGTG K LKSIDVRGRGDDALRSADSSN+V RTME HKG V  IAVLPEDPRIVATWSD+VGEPVKLWKSRSL+GRN GGGNVK RDASQSSNPVATLRPPDKTSFVVD+
Sbjct:  290 KGDGGWDSAVAAAENAHADLGG-NEGYASLAWLPGTDSVLLAGTGSKFLKSIDVRGRGDDALRSADSSNVVPRTMEVHKGGVIRIAVLPEDPRIVATWSDSVGEPVKLWKSRSLVGRNGGGGNVKARDASQSSNPVATLRPPDKTSFVVDI 439
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BLAST of mRNA_E-fasciculatus_F_contig15872.4030.1 vs. uniprot
Match: A0A6H5KKS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS1_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 1.530e-73
Identity = 128/151 (84.77%), Postives = 132/151 (87.42%), Query Frame = 1 
Query:    1 KGDGGWDSAVAAAENTHLDLGGLNEGILSLAWLPGADSVLLAGTGFKSLKSIDVRGRGDDALRSADSSNIVVRTMEAHKGTVSGIAVLPEDPRIVATWSDTVGEPVKLWKSRSLLGRNAGGGNVKGRDASQSSNPVATLRPPDKTSFVVDV 453
            KGD GWDSAVAAAENTH DLGGLNEG +SLAWLPG DSVLLAGTG K LKSIDVRGRG      ADSSN V+R ME HKG V GIAVLPEDPRIVATWSD+ GEPVKLWKSRSL+GRNAGGGNVK RDASQSSNPVATLRPPDKTSFVVDV
Sbjct:  703 KGDCGWDSAVAAAENTHADLGGLNEGYVSLAWLPGTDSVLLAGTGSKFLKSIDVRGRG------ADSSNSVLRIMEVHKGGVVGIAVLPEDPRIVATWSDSAGEPVKLWKSRSLVGRNAGGGNVKARDASQSSNPVATLRPPDKTSFVVDV 847
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15872.4030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6M1_ECTSI3.520e-8087.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKS1_9PHAE1.530e-7384.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15872contigE-fasciculatus_F_contig15872:104..2149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-00_009950.1
Exons3
Model size453
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15872.4030.1prot_E-fasciculatus_F_contig15872.4030.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15872 104..2149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.6898313-CDS-E-fasciculatus_F_contig15872:103..2761622928054.6898313-CDS-E-fasciculatus_F_contig15872:103..276Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15872 104..276 +
1695995805.2708123-CDS-E-fasciculatus_F_contig15872:103..2761695995805.2708123-CDS-E-fasciculatus_F_contig15872:103..276Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15872 104..276 +
1622928054.703663-CDS-E-fasciculatus_F_contig15872:721..8571622928054.703663-CDS-E-fasciculatus_F_contig15872:721..857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15872 722..857 +
1695995805.285741-CDS-E-fasciculatus_F_contig15872:721..8571695995805.285741-CDS-E-fasciculatus_F_contig15872:721..857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15872 722..857 +
1622928054.7176385-CDS-E-fasciculatus_F_contig15872:2005..21491622928054.7176385-CDS-E-fasciculatus_F_contig15872:2005..2149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15872 2006..2149 +
1695995805.2962391-CDS-E-fasciculatus_F_contig15872:2005..21491695995805.2962391-CDS-E-fasciculatus_F_contig15872:2005..2149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15872 2006..2149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15872.4030.1

>prot_E-fasciculatus_F_contig15872.4030.1 ID=prot_E-fasciculatus_F_contig15872.4030.1|Name=mRNA_E-fasciculatus_F_contig15872.4030.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=151bp
KGDGGWDSAVAAAENTHLDLGGLNEGILSLAWLPGADSVLLAGTGFKSLK
SIDVRGRGDDALRSADSSNIVVRTMEAHKGTVSGIAVLPEDPRIVATWSD
TVGEPVKLWKSRSLLGRNAGGGNVKGRDASQSSNPVATLRPPDKTSFVVD
V
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mRNA from alignment at E-fasciculatus_F_contig15872:104..2149+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15872.4030.1 ID=mRNA_E-fasciculatus_F_contig15872.4030.1|Name=mRNA_E-fasciculatus_F_contig15872.4030.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2046bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15872:104..2149+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGGGGACGGCGGCTGGGACTCGGCCGTGGCGGCAGCGGAGAACACCCA
CTTGGACCTCGGGGGGTTGAACGAGGGGATACTGTCGCTGGCCTGGCTGC
CTGGGGCCGACTCCGTGCTCCTGGCTGGCACCGGGTTCAAGTCCCTCAAG
AGCATCGACGTCCGGGGCAGGGGGTGAGAGCAGGCGTTGCTGCTGGTGCT
GGTGCTGCTGGTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTGATGGTGGTAGTGCTCTGCTGTTGCTGCTGTTGCTGCTGGG
GTGGTGGTGTTGTTGTTGTGGGTGGTAGCACCTGTATTGGTGATACATGC
CGTTGTCGTTTGTCTGGTGATTATGATTATGGGCGTTGGTGTTGTTCTTG
TCGTTCTTGCTACGTAGCAGCAACAACGGAACCCGGAACGATAGCTGCTG
CTACTACTGCTGCTGCTGCTGCTGCTGCTGCTTGCTGGCGCCGGGTTTAC
ACAACCTTATCGCCTCGGCGGGGGGATGATCGATCGCTTTTGCCGTTTGT
GATGACAACGTCAACCCCTATCACGCCCCCCCTCACCCCCCCTCCCTACC
CTGCTTCCATTCCGCCAGAGACGATGCCCTTCGCAGCGCCGACAGCAGCA
ACATCGTTGTCCGAACGATGGAGGCCCACAAGGGGACCGTTAGCGGTATC
GCGGTGCTGCCGGAGGACCCTAGGATAGTCGCCACCTGGTCGGACACTGT
GGGGGTAAGTGTGTTTGCTTGTGTGTGTTTTATTTATTGTTTGCGTCGAC
CGACCGCGCTAACCGGCTGACCAATGAAAATACAAAGGACGTCAGTCTCC
GAGGGTTGGAAGACACTAAATGCTTCCATAGTCTACAATCTGGGAACCTG
ACCGAGCGTCGTGGGGGAGTCTGCGTTACTCTCCGGATTAAAGACAGATA
CCGTAGCAATAACAGACGAAAACTGTACGCGTTTACGATGGCTGCTGCTA
CTTTGGATGCGCCTGCGCTTTGGGTTGCTTTTCATCGTCCTCCCTGCATT
CACTGCCACCACTCTCGTTGCCAGTTGCCAGTATTCCCGTTACTCTTTGG
CAGGTCCTCTCCAGTGTGTGTGTGTGTTTGCTTTTTATCATCGACCGCGA
TATCCGGCTGACCAATGAAAATACGTCGATGCTTCTGCAGGACATGATCT
GGACCATGTGCGCGTATGTGTGTTCTCTGTCTCGCTGTACATAGTCGTAT
GGGACATACACGAATGACTGTATTGCCTCTGCGGTGACTGGTGCTGCTGC
TGCTGCTGCTGTGGCCTTACGCTGTTTTCCTTCTTTTTTTTTTCACGGGG
TGGGCTTTCCGTGTAAGCTTTCTTTCTTCCGATGATTGTGTAAGCTTTCT
TTCTTTCGATTATTGTGTAAGCTTTCTTTCTTTCGATGATTGTGTAAGCT
TTCTTTCTTCCGATGATTGTGTTTTCGGCCACGATTGTGCGGACCACCTC
CTTCCTTCTCTCCCCGTCGTTGCGTGTCGTTTTTTTCGTTTCAATTCCTT
TCTTTTTGAGCCCGTTTCAAATTCTTTTGTTTGGCCCCCTCAAGCGTGTT
AAGTGATACGATGAGGCGCCCAGACATACACTACTGCTGTACGTACGGCA
GCATTGCCCAAGATGTACGATCCATCGAGCCGCAGAAACCTTTGGACGGG
ATGACGACTATCCCTGGCTCATTCACTCACTCACTCAACGTTGCTGCTTT
TTTCGGAGGCGTGTTTGTTCCAGGGGCTGCGGGTATGTTTCACCTTTCAC
TTGTTTTTTTTTTTTCTGTGAGAGGATAATATTTTGGGAGGTTCGTGGAG
CAAACAACCCCCGTGTTCTCTTACTTTTTCTGCAATTTTTTTCTCGAAAC
AGGAGCCCGTAAAGCTGTGGAAATCGCGCAGTCTGCTGGGCCGCAACGCC
GGCGGCGGCAACGTGAAGGGCCGCGACGCGAGCCAAAGCTCGAACCCCGT
GGCGACCCTACGCCCTCCCGACAAGACAAGCTTCGTCGTGGACGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15872:104..2149+

>mRNA_E-fasciculatus_F_contig15872.4030.1 ID=mRNA_E-fasciculatus_F_contig15872.4030.1|Name=mRNA_E-fasciculatus_F_contig15872.4030.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15872:104..2149+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGGGGACGGCGGCTGGGACTCGGCCGTGGCGGCAGCGGAGAACACCCA
CTTGGACCTCGGGGGGTTGAACGAGGGGATACTGTCGCTGGCCTGGCTGC
CTGGGGCCGACTCCGTGCTCCTGGCTGGCACCGGGTTCAAGTCCCTCAAG
AGCATCGACGTCCGGGGCAGGGGAAGGGGGACGGCGGCTGGGACTCGGCC
GTGGCGGCAGCGGAGAACACCCACTTGGACCTCGGGGGGTTGAACGAGGG
GATACTGTCGCTGGCCTGGCTGCCTGGGGCCGACTCCGTGCTCCTGGCTG
GCACCGGGTTCAAGTCCCTCAAGAGCATCGACGTCCGGGGCAGGGGAGAC
GATGCCCTTCGCAGCGCCGACAGCAGCAACATCGTTGTCCGAACGATGGA
GGCCCACAAGGGGACCGTTAGCGGTATCGCGGTGCTGCCGGAGGACCCTA
GGATAGTCGCCACCTGGTCGGACACTGTGGGGAGACGATGCCCTTCGCAG
CGCCGACAGCAGCAACATCGTTGTCCGAACGATGGAGGCCCACAAGGGGA
CCGTTAGCGGTATCGCGGTGCTGCCGGAGGACCCTAGGATAGTCGCCACC
TGGTCGGACACTGTGGGGGAGCCCGTAAAGCTGTGGAAATCGCGCAGTCT
GCTGGGCCGCAACGCCGGCGGCGGCAACGTGAAGGGCCGCGACGCGAGCC
AAAGCTCGAACCCCGTGGCGACCCTACGCCCTCCCGACAAGACAAGCTTC
GTCGTGGACGTGGAGCCCGTAAAGCTGTGGAAATCGCGCAGTCTGCTGGG
CCGCAACGCCGGCGGCGGCAACGTGAAGGGCCGCGACGCGAGCCAAAGCT
CGAACCCCGTGGCGACCCTACGCCCTCCCGACAAGACAAGCTTCGTCGTG
GACGTG
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