mRNA_E-fasciculatus_F_contig15871.4029.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15871.4029.1
Unique NamemRNA_E-fasciculatus_F_contig15871.4029.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15871.4029.1 vs. uniprot
Match: A0A6H5L0I5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.480e-21
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 VCRVDFLRPDSGDIWYLRLLLHHIAASNWTDLRLYNGELHGSHQAAARARGLVADTEEYDLTFREAIDFSTPRELRCLFVTLIIAGAPANTLWETHQDALVAD 309
            V RV  + PD GD++YLRLLLHH  A ++  LR ++  ++ + Q AARA G++   +EY +  +EA+ F+T R+LR LFVTLI+ GAPA  LWE        D
Sbjct:  286 VARVSAMSPDKGDVFYLRLLLHHKPARSFEQLRTHDDTVYDTFQDAARAMGIIKHDDEYRICLQEAVIFNTGRQLRELFVTLILDGAPAKILWEQFNQDFTED 388          
BLAST of mRNA_E-fasciculatus_F_contig15871.4029.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.770e-21
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 VCRVDFLRPDSGDIWYLRLLLHHIAASNWTDLRLYNGELHGSHQAAARARGLVADTEEYDLTFREAIDFSTPRELRCLFVTLIIAGAPANTLWETHQDALVAD 309
            V RV  + PD GD+++LRLLLHH  A ++  LR ++  ++ + Q AARA G++   +EY +  +EA+ F+T R+LR LFVTLI+ GAPA  LWE        D
Sbjct:  123 VARVSVMSPDKGDVFFLRLLLHHKPARSFEQLRTHDDTVYDTFQDAARAMGIIKHDDEYRICLQEAVIFNTGRQLRELFVTLILDGAPAKILWEQFNQDFTED 225          
BLAST of mRNA_E-fasciculatus_F_contig15871.4029.1 vs. uniprot
Match: A0A8H3XFJ6_GIGMA (ATP-dependent DNA helicase PIF1 n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3XFJ6_GIGMA)

HSP 1 Score: 86.7 bits (213), Expect = 6.090e-18
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 VCRVDFLRPDSGDIWYLRLLLHHIAASNWTDLRLYNGELHGSHQAAARARGLVADTEEYDLTFREAIDFS-TPRELRCLFVTLIIAGAPANTLWETHQDALVADY 312
            + R++ +RP  G  +YLR+LL++ AA ++TDL + NG L+ + Q AARA GL+ +T E +  F EA+D   TP +LR LF  LI+ G  A   W+ +++ L ADY
Sbjct:  231 ITRMNIIRPCVGKKYYLRMLLNYRAARSFTDLLIVNGILYSNFQDAARAFGLLENTNENEQCFAEAMDNKCTPAQLRLLFCRLILEGMAAQFFWQNYRELLSADY 335          
BLAST of mRNA_E-fasciculatus_F_contig15871.4029.1 vs. uniprot
Match: A0A8H7UP69_9FUNG (ATP-dependent DNA helicase n=2 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UP69_9FUNG)

HSP 1 Score: 84.3 bits (207), Expect = 8.120e-17
Identity = 44/105 (41.90%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    7 RVDFLRPDSGDIWYLRLLLHHI-AASNWTDLRLYNGELHGSHQAAARARGLVADTEEYDLTFREAIDFSTPRELRCLFVTLIIAGAPANT--LWETHQDALVADY 312
            R+  + P   + ++LRLLL+++  A ++ D+R ++G +H + QAAARA+GL+AD E++DL  RE+  F +P  LR LFVT++I   P++   L  TH+D+L  DY
Sbjct:  853 RIYSVSPKESEKYFLRLLLNYVRGAKSFEDVRTFDGVVHETFQAAARAKGLLADDEQWDLCLRESATFQSPIMLRRLFVTILIFCEPSSPFQLGNTHKDSLSDDY 957          
BLAST of mRNA_E-fasciculatus_F_contig15871.4029.1 vs. uniprot
Match: A0A6A4XGJ7_AMPAM (ATP-dependent DNA helicase n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4XGJ7_AMPAM)

HSP 1 Score: 82.4 bits (202), Expect = 3.790e-16
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    7 RVDFLRPDSGDIWYLRLLLHHI-AASNWTDLRLYNGELHGSHQAAARARGLVADTEEYDLTFREAIDFSTPRELRCLFVTLIIAGAPANT--LWETHQDALVADY 312
            RV  + P  GD++YLRLLLHH+  A+++ +LR   G +  +HQ A R RGL+ +  E+D+T +EA     PR+LR L VT+++   PA+   L+E H  AL  D+
Sbjct:   93 RVVSVSPRQGDVFYLRLLLHHVPGATSFAELRTVAGVVCATHQEACRRRGLLQEDAEWDVTMQEAALVQMPRQLRQLLVTILLFCEPADPAGLFERHYPALAEDF 197          
BLAST of mRNA_E-fasciculatus_F_contig15871.4029.1 vs. uniprot
Match: UPI001ED8AC21 (uncharacterized protein LOC124159721 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8AC21)

HSP 1 Score: 82.4 bits (202), Expect = 3.870e-16
Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    1 VCRVDFLRPDSGDIWYLRLLLHHIAASNWTDLRLYNGELHGSHQAAARARGLVADTEEYDLTFREAIDFSTPRELRCLFVTLIIAGAPANTLWETHQDALVAD 309
            VCR+ ++ P+ G+++YLR+LL  I    + DL    G    + Q  AR  GL+ D EEY+   REA  F     LR LFV L   GAPA  LWET +D++  D
Sbjct: 1158 VCRIHWVSPNRGELYYLRILLMSINCRGYEDLLSRGGNDCRTFQDLARTMGLIEDEEEYNHVIREASTFMVGYRLRSLFVLLCNMGAPAALLWETFKDSICED 1260          
BLAST of mRNA_E-fasciculatus_F_contig15871.4029.1 vs. uniprot
Match: A0A8H7UQJ6_9FUNG (ATP-dependent DNA helicase n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UQJ6_9FUNG)

HSP 1 Score: 81.6 bits (200), Expect = 7.050e-16
Identity = 43/105 (40.95%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    7 RVDFLRPDSGDIWYLRLLLHHI-AASNWTDLRLYNGELHGSHQAAARARGLVADTEEYDLTFREAIDFSTPRELRCLFVTLIIAGAPANT--LWETHQDALVADY 312
            R+  + P   + +YLRLLL+++  A ++ D+R   G L+ ++QAAARA+GL+AD E++D    E+  F +P  LR LFVT+++   P++   LW TH+D L  DY
Sbjct:  342 RIYSVSPKESEKYYLRLLLNYVRGAKSFEDMRTVEGVLYETYQAAARAKGLLADDEQWDTCLLESDTFQSPFMLRRLFVTILVFCNPSSPFQLWITHKDNLAYDY 446          
BLAST of mRNA_E-fasciculatus_F_contig15871.4029.1 vs. uniprot
Match: UPI001C913DCF (uncharacterized protein LOC122382858 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C913DCF)

HSP 1 Score: 80.9 bits (198), Expect = 1.290e-15
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    7 RVDFLRPDSGDIWYLRLLLHHI-AASNWTDLRLYNGELHGSHQAAARARGLVADTEEYDLTFREAIDFSTPRELRCLFVTLIIAGAPAN--TLWETHQDALVADY 312
            RV  L P  GD++YLR+LLHH+  A+ + DLR  +G++  +HQ A R RGL+ D +E+  T  EA+    P +LR LFV L++  APA+  TL    Q A+  D+
Sbjct:  366 RVVSLTPRHGDVFYLRVLLHHVPGATTFADLRTVDGQVCDTHQEACRRRGLLQDDQEWAETLAEAVRTQRPGQLRQLFVVLLLFCAPADPATLLHRFQAAMGEDF 470          
BLAST of mRNA_E-fasciculatus_F_contig15871.4029.1 vs. uniprot
Match: A0A6A4VRF7_AMPAM (ATP-dependent DNA helicase n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VRF7_AMPAM)

HSP 1 Score: 80.5 bits (197), Expect = 1.590e-15
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    7 RVDFLRPDSGDIWYLRLLLHHI-AASNWTDLRLYNGELHGSHQAAARARGLVADTEEYDLTFREAIDFSTPRELRCLFVTLIIAGAPAN--TLWETHQDALVAD 309
            RV  L P  GD++YLR+LLHH+  A+ +TDLR  +G++  +HQ A R RGL+ D +E+  T  EA+    P +L+ LFV L++  APA+  TL    Q A+  D
Sbjct:   78 RVVSLTPRHGDVFYLRVLLHHVPGATTFTDLRTVDGQVCDTHQEACRRRGLLQDDQEWAETLAEAVRTQRPGQLKQLFVVLLLFCAPADPVTLLHPFQAAMGED 181          
BLAST of mRNA_E-fasciculatus_F_contig15871.4029.1 vs. uniprot
Match: A0A6A4X3W9_AMPAM (ATP-dependent DNA helicase n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4X3W9_AMPAM)

HSP 1 Score: 79.7 bits (195), Expect = 3.350e-15
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    7 RVDFLRPDSGDIWYLRLLLHHI-AASNWTDLRLYNGELHGSHQAAARARGLVADTEEYDLTFREAIDFSTPRELRCLFVTLIIAGAPAN--TLWETHQDALVADY 312
            RV  L P  GD++YLR+LLHH+  A+ + DLR  +G++  +HQ A R RGL+ D +E+  T  EA+    P +LR LFV +++  APA+  TL    Q A+  D+
Sbjct:  684 RVVSLTPRHGDVFYLRVLLHHVPGATTFADLRTVDGQVCDTHQEACRRRGLLQDDQEWAETLAEAVRTQRPGQLRQLFVVVLLFCAPADPATLLHRFQAAMGEDF 788          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15871.4029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0I5_9PHAE1.480e-2145.63ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JZJ6_9PHAE3.770e-2144.66ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A8H3XFJ6_GIGMA6.090e-1842.86ATP-dependent DNA helicase PIF1 n=1 Tax=Gigaspora ... [more]
A0A8H7UP69_9FUNG8.120e-1741.90ATP-dependent DNA helicase n=2 Tax=Mucor saturninu... [more]
A0A6A4XGJ7_AMPAM3.790e-1641.90ATP-dependent DNA helicase n=1 Tax=Amphibalanus am... [more]
UPI001ED8AC213.870e-1641.75uncharacterized protein LOC124159721 n=1 Tax=Ischn... [more]
A0A8H7UQJ6_9FUNG7.050e-1640.95ATP-dependent DNA helicase n=1 Tax=Mucor saturninu... [more]
UPI001C913DCF1.290e-1542.86uncharacterized protein LOC122382858 n=1 Tax=Amphi... [more]
A0A6A4VRF7_AMPAM1.590e-1543.27ATP-dependent DNA helicase n=2 Tax=Amphibalanus am... [more]
A0A6A4X3W9_AMPAM3.350e-1541.90ATP-dependent DNA helicase n=1 Tax=Amphibalanus am... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15871contigE-fasciculatus_F_contig15871:1184..1495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score76.6
Seed ortholog evalue7.4e-12
Seed eggNOG ortholog4558.Sb07g020600.1
KEGG koko:K07466,ko:K15255
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs37I5H@33090,3GMSB@35493,3M24Q@4447,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.D
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.6065764-CDS-E-fasciculatus_F_contig15871:1183..14951622928054.6065764-CDS-E-fasciculatus_F_contig15871:1183..1495Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15871 1184..1495 +
1695995805.2590199-CDS-E-fasciculatus_F_contig15871:1183..14951695995805.2590199-CDS-E-fasciculatus_F_contig15871:1183..1495Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15871 1184..1495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15871.4029.1prot_E-fasciculatus_F_contig15871.4029.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15871 1184..1495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15871.4029.1

>prot_E-fasciculatus_F_contig15871.4029.1 ID=prot_E-fasciculatus_F_contig15871.4029.1|Name=mRNA_E-fasciculatus_F_contig15871.4029.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
VCRVDFLRPDSGDIWYLRLLLHHIAASNWTDLRLYNGELHGSHQAAARAR
GLVADTEEYDLTFREAIDFSTPRELRCLFVTLIIAGAPANTLWETHQDAL
VADY
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mRNA from alignment at E-fasciculatus_F_contig15871:1184..1495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15871.4029.1 ID=mRNA_E-fasciculatus_F_contig15871.4029.1|Name=mRNA_E-fasciculatus_F_contig15871.4029.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=312bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15871:1184..1495+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGTAGGGTTGACTTCCTCAGGCCGGACTCTGGTGACATTTGGTATCT GCGTCTTCTTTTGCACCACATTGCGGCATCCAACTGGACTGACCTCCGCC TTTATAACGGAGAACTCCATGGTTCACACCAAGCCGCGGCACGTGCACGT GGTTTGGTTGCTGACACCGAGGAATACGACTTGACTTTCAGGGAGGCCAT CGATTTTTCAACTCCACGAGAGTTGCGGTGCCTGTTCGTTACTCTCATTA TCGCAGGTGCACCAGCAAATACCCTGTGGGAAACGCACCAAGACGCCCTC GTTGCAGATTAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15871:1184..1495+

>mRNA_E-fasciculatus_F_contig15871.4029.1 ID=mRNA_E-fasciculatus_F_contig15871.4029.1|Name=mRNA_E-fasciculatus_F_contig15871.4029.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15871:1184..1495+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGTAGGGTTGACTTCCTCAGGCCGGACTCTGGTGACATTTGGTATCT
GCGTCTTCTTTTGCACCACATTGCGGCATCCAACTGGACTGACCTCCGCC
TTTATAACGGAGAACTCCATGGTTCACACCAAGCCGCGGCACGTGCACGT
GGTTTGGTTGCTGACACCGAGGAATACGACTTGACTTTCAGGGAGGCCAT
CGATTTTTCAACTCCACGAGAGTTGCGGTGCCTGTTCGTTACTCTCATTA
TCGCAGGTGCACCAGCAAATACCCTGTGGGAAACGCACCAAGACGCCCTC
GTTGCAGATTACGTGTGTAGGGTTGACTTCCTCAGGCCGGACTCTGGTGA
CATTTGGTATCTGCGTCTTCTTTTGCACCACATTGCGGCATCCAACTGGA
CTGACCTCCGCCTTTATAACGGAGAACTCCATGGTTCACACCAAGCCGCG
GCACGTGCACGTGGTTTGGTTGCTGACACCGAGGAATACGACTTGACTTT
CAGGGAGGCCATCGATTTTTCAACTCCACGAGAGTTGCGGTGCCTGTTCG
TTACTCTCATTATCGCAGGTGCACCAGCAAATACCCTGTGGGAAACGCAC
CAAGACGCCCTCGTTGCAGATTAC
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