mRNA_E-fasciculatus_F_contig15870.4027.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15870.4027.1
Unique NamemRNA_E-fasciculatus_F_contig15870.4027.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15870.4027.1 vs. uniprot
Match: A0A6H5KCD7_9PHAE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD7_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.090e-44
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:   13 QLVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 237
            Q VYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG
Sbjct:   58 QFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 132
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BLAST of mRNA_E-fasciculatus_F_contig15870.4027.1 vs. uniprot
Match: A0A6G0XIX2_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIX2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.420e-25
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:   13 QLVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 237
            Q VYCVLVG+FPFNSFL+GF STVG FVLTVSLRMQ+  ++        RS +R FA+Y+ CN +LFLVVMNFMG
Sbjct:   54 QFVYCVLVGTFPFNSFLSGFLSTVGVFVLTVSLRMQIDPSNQQAFAASPRSPQRAFADYLFCNCILFLVVMNFMG 128
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BLAST of mRNA_E-fasciculatus_F_contig15870.4027.1 vs. uniprot
Match: T0PSD9_SAPDV (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0PSD9_SAPDV)

HSP 1 Score: 97.8 bits (242), Expect = 1.510e-24
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:   13 QLVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 237
            Q VYC+LVG+FPFNSFL+GF STVG FVLTVSLRMQ+   + +      R+ ER FA+Y+ CN +LFLVVMNFMG
Sbjct:   51 QFVYCMLVGTFPFNSFLSGFISTVGVFVLTVSLRMQINPTNADAFSSAPRTPERAFADYLFCNFILFLVVMNFMG 125
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BLAST of mRNA_E-fasciculatus_F_contig15870.4027.1 vs. uniprot
Match: A0A485L3R2_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3R2_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.670e-24
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:   13 QLVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 237
            Q +YC+LVG+FPFNSFL+GF +TVG FVLTVSLRMQ+  ++        RS +R FA+Y+ CN+VLFLVVMNFMG
Sbjct:   54 QFLYCLLVGTFPFNSFLSGFIATVGVFVLTVSLRMQIDPSNAAAFAADPRSPQRAFADYLFCNLVLFLVVMNFMG 128
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BLAST of mRNA_E-fasciculatus_F_contig15870.4027.1 vs. uniprot
Match: A0A835YRC1_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.020e-24
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   13 QLVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 237
            Q+VYC LVGSFPFNSFLAG   +VG FVLTVSLR+ +  + D    +R  S++  FAEYV CNM+LFL VMNFMG
Sbjct:   44 QVVYCGLVGSFPFNSFLAGIMCSVGVFVLTVSLRLHLAPSGDGVAALRRDSVKNAFAEYVFCNMILFLAVMNFMG 118
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BLAST of mRNA_E-fasciculatus_F_contig15870.4027.1 vs. uniprot
Match: F0W9F1_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9F1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.740e-24
Identity = 49/75 (65.33%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   13 QLVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 237
            Q VYC+LVGSFPFNSFL+GF  TVG FVLTVSLRMQV    D       RS +R FA+Y+ CN++LFLVV NFMG
Sbjct:   51 QFVYCILVGSFPFNSFLSGFICTVGVFVLTVSLRMQV----DASNKFTDRSEQRAFADYLFCNLILFLVVFNFMG 121
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BLAST of mRNA_E-fasciculatus_F_contig15870.4027.1 vs. uniprot
Match: K3WS81_GLOUD (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS81_GLOUD)

HSP 1 Score: 92.4 bits (228), Expect = 1.450e-22
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:   13 QLVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 237
            Q +YCVLVG+FPFNSFLAGF  TVG FVL VSLRMQ+   ++     + RS +R FA+Y+ CN++LFLVV NFMG
Sbjct:   43 QFIYCVLVGTFPFNSFLAGFVCTVGVFVLGVSLRMQINPENE----FKDRSEQRAFADYLFCNIILFLVVFNFMG 113
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BLAST of mRNA_E-fasciculatus_F_contig15870.4027.1 vs. uniprot
Match: A0A1V9ZDH4_9STRA (Acyl-CoA synthetase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDH4_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.530e-22
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:   13 QLVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 237
            Q VYC+LVG+FPFNSFL+GF STVG FVLTVSLRMQ+   +        RS ER FA+Y+ CN++LFLVVMNFMG
Sbjct:  511 QFVYCMLVGTFPFNSFLSGFISTVGVFVLTVSLRMQINPTNAEAFDSAPRSSERAFADYLFCNLILFLVVMNFMG 585
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BLAST of mRNA_E-fasciculatus_F_contig15870.4027.1 vs. uniprot
Match: A0A024G6Z8_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6Z8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.800e-22
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   13 QLVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 237
            Q VYCVLVG+FPFNSFL+GF  TVG FVLTVSLRMQV    D       R+ +R FA+Y+ CN++LFLVV NFMG
Sbjct:   51 QFVYCVLVGNFPFNSFLSGFICTVGVFVLTVSLRMQV----DPTNEFVDRTEQRAFADYLFCNLILFLVVFNFMG 121
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15870.4027.1 vs. uniprot
Match: D0NLD6_PHYIT (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NLD6_PHYIT)

HSP 1 Score: 91.3 bits (225), Expect = 4.480e-22
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:   13 QLVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 237
            Q +YC+LVG+FPFNSFLAGF  TVG FVL VSLRMQ+   ++ G     R+ +R FA+Y+ CN++LFLVV NFMG
Sbjct:   46 QFIYCLLVGNFPFNSFLAGFVCTVGVFVLAVSLRMQINPENNFGD----RTEQRAFADYLFCNIILFLVVFNFMG 116
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15870.4027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCD7_9PHAE3.090e-4498.67Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A6G0XIX2_9STRA1.420e-2565.33Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
T0PSD9_SAPDV1.510e-2464.00Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A485L3R2_9STRA4.670e-2462.67Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A835YRC1_9STRA5.020e-2462.67Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
F0W9F1_9STRA7.740e-2465.33Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
K3WS81_GLOUD1.450e-2261.33Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A1V9ZDH4_9STRA1.530e-2265.33Acyl-CoA synthetase n=1 Tax=Thraustotheca clavata ... [more]
A0A024G6Z8_9STRA1.800e-2264.00Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
D0NLD6_PHYIT4.480e-2260.00Dolichyl-diphosphooligosaccharide--protein glycosy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15870contigE-fasciculatus_F_contig15870:11..603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue7e-18
Seed eggNOG ortholog112098.XP_008621413.1
Preferred nameDAD1
KEGG koko:K12668
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
GOsGO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009790,GO:0009792,GO:0009987,GO:0009991,GO:0010941,GO:0012505,GO:0016020,GO:0016021,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0031224,GO:0031667,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0042493,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0060548,GO:0065007,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.dolichyl-diphosphooligosaccharide-protein glycotransferase activity
EggNOG OGsKOG1746@1,KOG1746@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionOligosaccharyltransferase, DAD1 subunit (or epsilon subunit)
Ec32 orthologEc-07_004230.1
Exons2
Model size240
Cds size240
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.524291-CDS-E-fasciculatus_F_contig15870:10..1131622928054.524291-CDS-E-fasciculatus_F_contig15870:10..113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15870 11..113 +
1695995805.2221668-CDS-E-fasciculatus_F_contig15870:10..1131695995805.2221668-CDS-E-fasciculatus_F_contig15870:10..113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15870 11..113 +
1622928054.5381215-CDS-E-fasciculatus_F_contig15870:466..6031622928054.5381215-CDS-E-fasciculatus_F_contig15870:466..603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15870 467..603 +
1695995805.2350419-CDS-E-fasciculatus_F_contig15870:466..6031695995805.2350419-CDS-E-fasciculatus_F_contig15870:466..603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15870 467..603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15870.4027.1prot_E-fasciculatus_F_contig15870.4027.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15870 11..603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15870.4027.1

>prot_E-fasciculatus_F_contig15870.4027.1 ID=prot_E-fasciculatus_F_contig15870.4027.1|Name=mRNA_E-fasciculatus_F_contig15870.4027.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=80bp
MLLPQLVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGV
VRGRSLERCFAEYVVCNMVLFLVVMNFMG*
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mRNA from alignment at E-fasciculatus_F_contig15870:11..603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15870.4027.1 ID=mRNA_E-fasciculatus_F_contig15870.4027.1|Name=mRNA_E-fasciculatus_F_contig15870.4027.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=593bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15870:11..603+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTTGCCGCAGTTGGTATATTGCGTGCTGGTGGGGTCCTTCCCGTT
CAACTCGTTTCTGGCTGGGTTCTCGTCAACGGTTGGGGCCTTCGTATTGA
CAGGTTGGTTTCGTGTTCGTTAAAGCTGCTGCTGCTGCGAGAGGTCGGAC
CGCAGCTGCAGACGCCACGTACTGTTGGGTATGTACGGGGTCTATATTCG
TCACAACGCCACTACAACAAATGCTGCAGCCCTTCTTCATGCAGGACTGA
TTTCTCTTGGGGACTCGTTTCGATGTTGCTGCGGAGTTTTCTTCCAAGTT
GCGATCCCCCCGTCCCCTTTCGGCTTGTGGGCTGGACCGCAGGCCCGCCT
TTTGGCAACATGCGTACCCTCTTGTCATAAAAAAACACGCCTACACTCCG
CAGAACCGTCATTTTTTGTGGATTCTCTCCGTTCGTCCCCTCTTGCTTTT
CCCAAGTGTCTTTGAGAATGCAGGTGATGGAAGCGAGCGATAACGGGGGG
GTCGTGCGGGGGCGGTCGCTGGAGCGATGCTTCGCGGAGTACGTGGTGTG
CAACATGGTCCTCTTCTTGGTGGTGATGAACTTCATGGGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15870:11..603+

>mRNA_E-fasciculatus_F_contig15870.4027.1 ID=mRNA_E-fasciculatus_F_contig15870.4027.1|Name=mRNA_E-fasciculatus_F_contig15870.4027.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15870:11..603+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTTGCCGCAGTTGGTATATTGCGTGCTGGTGGGGTCCTTCCCGTT
CAACTCGTTTCTGGCTGGGTTCTCGTCAACGGTTGGGGCCTTCGTATTGA
CAGATGTTGTTGCCGCAGTTGGTATATTGCGTGCTGGTGGGGTCCTTCCC
GTTCAACTCGTTTCTGGCTGGGTTCTCGTCAACGGTTGGGGCCTTCGTAT
TGACAGTGTCTTTGAGAATGCAGGTGATGGAAGCGAGCGATAACGGGGGG
GTCGTGCGGGGGCGGTCGCTGGAGCGATGCTTCGCGGAGTACGTGGTGTG
CAACATGGTCCTCTTCTTGGTGGTGATGAACTTCATGGGGTGATGTCTTT
GAGAATGCAGGTGATGGAAGCGAGCGATAACGGGGGGGTCGTGCGGGGGC
GGTCGCTGGAGCGATGCTTCGCGGAGTACGTGGTGTGCAACATGGTCCTC
TTCTTGGTGGTGATGAACTTCATGGGGTGA
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