mRNA_E-fasciculatus_F_contig1587.4026.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1587.4026.1
Unique NamemRNA_E-fasciculatus_F_contig1587.4026.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1587.4026.1 vs. uniprot
Match: D8LBY4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY4_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.090e-28
Identity = 71/116 (61.21%), Postives = 76/116 (65.52%), Query Frame = 1 
Query:    1 PIPNAWGALEGRAHLAQGSNRLAG-LPPTIFSIFVLL---LGVLS---RTDTKELGALTGLKGSHPSLKGGLLAGSIPNAWRALEGLAHLALGS------IPPELGNLAALTCLAL 309
            PIPNAWGAL+G AH A GSN+LAG +PP + S   L    LG  S   RT  KELGALT LK S PS    L    IPNAW AL+GLAHLALGS      IPPELGNLAAL CL L
Sbjct:    5 PIPNAWGALQGLAHRALGSNQLAGSIPPELGSFAALTHLELGENSQTMRTIPKELGALTELKESFPSYNQLLDTRPIPNAWGALQGLAHLALGSNQLAGSIPPELGNLAALACLDL 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1587.4026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBY4_ECTSI2.090e-2861.21Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1587contigE-fasciculatus_F_contig1587:10238..14091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-20_003740.1
Exons4
Model size309
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1587.4026.1prot_E-fasciculatus_F_contig1587.4026.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1587 10238..14091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.4249701-CDS-E-fasciculatus_F_contig1587:10237..102901622928054.4249701-CDS-E-fasciculatus_F_contig1587:10237..10290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1587 10238..10290 -
1695995805.1780798-CDS-E-fasciculatus_F_contig1587:10237..102901695995805.1780798-CDS-E-fasciculatus_F_contig1587:10237..10290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1587 10238..10290 -
1622928054.4381917-CDS-E-fasciculatus_F_contig1587:12007..120711622928054.4381917-CDS-E-fasciculatus_F_contig1587:12007..12071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1587 12008..12071 -
1695995805.1894617-CDS-E-fasciculatus_F_contig1587:12007..120711695995805.1894617-CDS-E-fasciculatus_F_contig1587:12007..12071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1587 12008..12071 -
1622928054.4514012-CDS-E-fasciculatus_F_contig1587:12269..123891622928054.4514012-CDS-E-fasciculatus_F_contig1587:12269..12389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1587 12270..12389 -
1695995805.1998894-CDS-E-fasciculatus_F_contig1587:12269..123891695995805.1998894-CDS-E-fasciculatus_F_contig1587:12269..12389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1587 12270..12389 -
1622928054.4753819-CDS-E-fasciculatus_F_contig1587:14019..140911622928054.4753819-CDS-E-fasciculatus_F_contig1587:14019..14091Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1587 14020..14091 -
1695995805.2095332-CDS-E-fasciculatus_F_contig1587:14019..140911695995805.2095332-CDS-E-fasciculatus_F_contig1587:14019..14091Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1587 14020..14091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1587.4026.1

>prot_E-fasciculatus_F_contig1587.4026.1 ID=prot_E-fasciculatus_F_contig1587.4026.1|Name=mRNA_E-fasciculatus_F_contig1587.4026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=103bp
PIPNAWGALEGRAHLAQGSNRLAGLPPTIFSIFVLLLGVLSRTDTKELGA
LTGLKGSHPSLKGGLLAGSIPNAWRALEGLAHLALGSIPPELGNLAALTC
LAL
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mRNA from alignment at E-fasciculatus_F_contig1587:10238..14091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1587.4026.1 ID=mRNA_E-fasciculatus_F_contig1587.4026.1|Name=mRNA_E-fasciculatus_F_contig1587.4026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3854bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1587:10238..14091- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCATCCCCAACGCGTGGGGAGCCCTTGAAGGACGCGCGCATCTTGCCCA
GGGTAGCAACCGACTCGCAGGAGTCTTACACGCCCAGCATGAGCAGGATC
ACCTAGCGCCGCACGACACCCCGCACACACCTTCGACGCTGCCACGCCAT
TTTTCAACGCCGATCTTTCTGGGGGGGGTCTGTGGACCAATAATCGTCAA
TGCTGTCCTAAGATTTGAACAGAATACCCGGGCTAATTCTGTACCGCCCG
CTAAGTTAGACACGATGGACACGTGATGTGGATTCCCATAAAACTTCAAC
GTGACAATACACCACGATACTGTTGACAAAATTCTTCTCACGCACGCGTC
GGCGGGACATTACTTTAAAAGCCGGCAGAGAGCATTTTCAAACATGCACG
CCCGGTATTAGCTACCTGTAAGCCTGTTGGAGTAGAGAGACAGATCCCGC
AGGTTGCTGAGAGCTCCCAGCGCCTCGGGGATAGGCCCTGCGTACGGATG
AAAGCAGGGGGAACACAGAATAGAGAAATCTAAGAATACCCGAAAACATC
TTGTCCCGACCAGCTTCTAAAACATGCACGGCCTCGTCGGAGATTCAACC
GCGCGTCGAGTGAGTGGCAACATCACCTGTTGCACAGGCCCCATTCCCGA
GCCCCTGGGAGCCCTCAGTGAGCCAACGAATTTTGACTGAACGAAAACAA
GCTCACCAGCAAGGGAGGAAGAGGTACACGTCTGCTTTCTAGAATATGAG
TCACATCTCTGCAAGGGGGGACTCACCTTCTAGAAGGCGAACCTTAGTGA
AAGGTCGGCATTGAACTGTCCACTCTACATTGTTTCGAATTTACTACAGG
GTCTACCGCCGGACCTTGGGGAGCTGGGGCTCTGGCGCCCTCTGTGTCTG
CTTTCACAGCTAGCTGAGCGGTGAGATTCACCGGTTTCGATTAATGAATC
TTTGTAGGACAACTGCTGGTCTTCCTTTTGGGAAACGTGATGGGGCTAGC
AGGTGTTCTGCAACATTTGTGACAAGTTTGATACATTCTCACCAGTCAGC
TGGTTAAAGTAGAGCCAAAGGGTCTGCAGCTGGCTCAGGCCTCCTAGCTC
CTGTGGGATGTATCCTGCTCAAGAAGCACAGCAAATAAGACACGACATTT
CTACGTCATCGAGATTGCAGAGCACTAAAACACACGTGGTGTGTTCAAAT
TTGAGTGACTCGCCCGGTGACAAAATGTTCTAGAACCTGGGGGGTTTCAT
GACCGCTCCCGCACTAACTTCGAATGACCTTGTTCGCCAAAGGTTCCATC
CCGCCGGGGCTTTCGAACCCTCCCGACCCTGACATACGTCGTCCTTCTAC
GCGGTGAGCCACGATCGACACATGTTGTGCCTTCCCACAAAATTGTAACA
TGACCCACAACAACGATATATTTATCTTCAACACGCCTCTCACCCACGCG
TCCGGACGACAAGCCGTTTTCACCTTGAAACCACTTACCACTGAGCTTGT
TCCAAGAGAGATCGAGATGTTGCAGGTTGCCGAGCTGTCCTAGCGTTGCT
GGAATCTCGTCTGCATGGTGGTAAAATAACGAGTATGGTGAAATGTTGCA
CTTTAGATCTATGTGCTGAGACTTCCCGAAAGTGTGCCTCGCCTGCGTAT
GTTCTACAACACCGACTCGCCCACGGCGTCGGCAGAACACATATTACTCA
AGCTTCCTCCCACCATTTTCTCGATTTTCGTGTTGCTGTTAGGCGTTTTG
TCCAGGACTGATACCAAGGAGCTGGGAGCGCTCACAGGGCTTAAGGGGTC
TCATCCGAGCTTAAAAGGCGGGGTCATACAATATTCTTACCATCTCTAAG
CCTGCCGCTTCCACACTACCTACTCACCCACTCCCGTCAAGCTTCTAGAC
GCTTGATGTTCTTGAAGCCAGGGGACCTCACTTTCTAGTCCGCGCAAAAC
CTTCACTCGTTTGTACCCGTGAGTGGATGAAACAAGTCCGTTGGTATGCG
ACAAGTGTCGACTATTGTAGCTGCTCGCAGGATCCATCCCCAACGCGTGG
AGAGCCCTTGAAGGACTCGCGCATCTTGCCCTGGGTAGCAACAAGGATAT
GAACTAATTTTTGTTCAACCCAACTTCCACCACACTACCACCACCGACTC
ACCAACCCCAAGGTGACGGTAGGTATTTCGTAAGGCGTTGGCGCAACATT
TCCTCCTAACGCGAAGGTGGGACGCACGTTCAAGAAGCCGGTGCCTTGAT
GACTTGTCTGGAGCTAATGGACCATTCTACATGAAGTTGAACCCACCACA
GGACCTAACCGCTGGAGTTTGGGAACCTGGGCAATCTGTAAAGAACGTCA
CCTTCATCCCAAACAGCTGAGCGTCGAGGTCCGATCTGCCGGCATCAGTG
AATGGCTTTGTCGAGCGCATGTTATGTATGACCAACCAACCATGTACTGT
CTCTCAAACATGGGTCTCACGCACGCCAGGACACATTTTTATTGAGCCAG
CGAAAGCACTTTAAAGCTGCAACACCCGCCCATTATTAAGATACCTGTGA
GCTGGTTGGAGCTGAGCAACAGCTCCCGCAGGTTGCCGAGAGCTCCCAGC
ACCTCGGGGATAGGCCCTGTACACGAAAGTCAGCCAGGGAAACAGAGCAT
GGAGAAATCTACGAAGTGAATTTATCGAAAAACACCCCGTCCAAGCTTCT
AAAACATGCTTGGTCTTGTAAGCGGCGGCGTCGAGTGAGTGGTGTATTTC
TGACAAACTTCGTCTACCTGTTGCGCGGGCCGGATCCCTGAGGAACTGGC
AACCCACAACGAGTCGAACGAGCCTTAGCTTTGGCTCACGAGAACAAGCT
TACCCCTGAGAGGAGAGGAGAGGATGAGACTTTAAGGTTTGATTTCCAGA
ACAGTGTGGGCGTGGTCAAGCCTTCTGCAAGCCGCAATTTGGGTGAAATG
TCGGCGTTGAATTGTCCACTCTACATCATGTCAACCGCCCGAGCTTGGGA
ACCTGGGGCTCTTGCGACACCCATGGACACACGCCGAACCCTCTTGCAAG
TACCGTGGGTCAGCTGCCTCTCACTCTCACTCCACATGTTCTTCCTCTAC
AGACGCCTACCTTGACTGAAATCGTCCCGTCGATACTTCGACCTTTCGAT
TGTCGAGCGACATGTATGCGTTGTTGTTCAGCACGCTTGGAGCAAGCCCA
CAACAACACACGTCATACATGTATACCGAACCACCACTGACGTTCATTGT
GCACGCCAAGCGAAGCAACAAATCCAACTACAGACTGACATTCACTGCTA
TTGCATTCCTGTTTGTTGGCGCACGCGCAGCGGAAGTAGAGTGCGTGCTG
AACGCGTACCGGGCGGCGATCAAAGTGCGGATGGGTCCAGAAAACGCGCA
GTCGTGAATATCCTTCGACCTTTCGCTACACCACCATCACAAAACGATGG
GAGGCTTTTTCAGTATGGTCTGTCTCGGAAAACAAACTCAAAGAACAATA
AAAATGAAACGCTTTAGGGAGATGCGCCTAGAGACAGGAGGTTCGACGGT
ACTTTCGTAGTTCGGAACACCCACGCCCCTACCCCCAAAAAAGTGTACCT
TTCCGGAGGGAATTTGTTGGACATGTTCCTGTGCATGGACCGTATGGTTG
CTTCAAAATTCAGCTTCGTACTGTAGCTTGCGTCGTGGATTTGGTAGATT
GATGCCTCCTTTCTAAACAGTGGCCTAAAAAAGCGGGAACAGAAACGCAA
TTCTCTTGAGAACGTCCCCGCGCCAACTACGGATGCGCTTTTTCGCTACA
GGTTCCATCCCGCCGGAGCTGGGAAACCTCGCCGCCCTAACATGCCTCGC
CCTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1587:10238..14091-

>mRNA_E-fasciculatus_F_contig1587.4026.1 ID=mRNA_E-fasciculatus_F_contig1587.4026.1|Name=mRNA_E-fasciculatus_F_contig1587.4026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1587:10238..14091- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCATCCCCAACGCGTGGGGAGCCCTTGAAGGACGCGCGCATCTTGCCCA
GGGTAGCAACCGACTCGCAGGACCCATCCCCAACGCGTGGGGAGCCCTTG
AAGGACGCGCGCATCTTGCCCAGGGTAGCAACCGACTCGCAGGACTTCCT
CCCACCATTTTCTCGATTTTCGTGTTGCTGTTAGGCGTTTTGTCCAGGAC
TGATACCAAGGAGCTGGGAGCGCTCACAGGGCTTAAGGGGTCTCATCCGA
GCTTAAAAGGCGGGCTTCCTCCCACCATTTTCTCGATTTTCGTGTTGCTG
TTAGGCGTTTTGTCCAGGACTGATACCAAGGAGCTGGGAGCGCTCACAGG
GCTTAAGGGGTCTCATCCGAGCTTAAAAGGCGGGCTGCTCGCAGGATCCA
TCCCCAACGCGTGGAGAGCCCTTGAAGGACTCGCGCATCTTGCCCTGGCT
GCTCGCAGGATCCATCCCCAACGCGTGGAGAGCCCTTGAAGGACTCGCGC
ATCTTGCCCTGGGTTCCATCCCGCCGGAGCTGGGAAACCTCGCCGCCCTA
ACATGCCTCGCCCTTGTTCCATCCCGCCGGAGCTGGGAAACCTCGCCGCC
CTAACATGCCTCGCCCTT
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