mRNA_E-fasciculatus_F_contig1587.4025.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1587.4025.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI) HSP 1 Score: 166 bits (419), Expect = 7.650e-42 Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 2
Query: 140 MAQTDRDALVALYRATGGENWRESQNWDTDADLTTWHGVEVNDQGRVVKLKLRDNNLEGEIPATLGQLGNLQQLRLSWNKLSGKWF 397
MAQTDRDALV LYRATGGENWRE QNWDTDADL TWHGV+VNDQGRVVKLKLRDNNLEGEIPATLG+LGNLQQL LS NKLSG+WF
Sbjct: 1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGNLQQLHLSSNKLSGRWF 86
BLAST of mRNA_E-fasciculatus_F_contig1587.4025.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE) HSP 1 Score: 149 bits (375), Expect = 2.900e-40 Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 2
Query: 140 MAQTDRDALVALYRATGGENWRESQNWDTDADLTTWHGVEVNDQGRVVKLKLRDNNLEGEIPATLGQLGNLQQ 358
MAQTDRDALVALYRATGGENWRESQNWDTDADL TWHGV+VNDQGRVVKLKLRDNNLEGEIPATLGQL NLQQ
Sbjct: 1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANLQQ 73
BLAST of mRNA_E-fasciculatus_F_contig1587.4025.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.550e-25 Identity = 53/85 (62.35%), Postives = 60/85 (70.59%), Query Frame = 2
Query: 134 STMAQTDRDALVALYRATGGENWRESQNWDTDADLTTWHGVEVNDQGRVVKLKLRDNNLEGEIPATLGQLGNLQQLRLSWNKLSG 388
ST TDR ALVAL+ ATGG NW+++ W+TDA L W+GVEVND GRVVKL LR NNL+G IP LG LG L L L NKL G
Sbjct: 6 STKMSTDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKGHIPRQLGDLGALMTLNLGVNKLEG 90
BLAST of mRNA_E-fasciculatus_F_contig1587.4025.1 vs. uniprot
Match: A0A6H5K3C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C2_9PHAE) HSP 1 Score: 107 bits (266), Expect = 2.400e-25 Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 2
Query: 140 MAQTDRDALVALYRATGGENWRESQNWDTDADLTTWHGVEVNDQGRVVKLKLRDNNLEG 316
MAQTDRDALVA+YRATGGE W SQNWDTD+DL TWHGV VNDQGRVVKL+L NNLEG
Sbjct: 1 MAQTDRDALVAMYRATGGEKWSTSQNWDTDSDLKTWHGVNVNDQGRVVKLELGFNNLEG 59
BLAST of mRNA_E-fasciculatus_F_contig1587.4025.1 vs. uniprot
Match: D8LL09_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI) HSP 1 Score: 108 bits (270), Expect = 3.340e-23 Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 2
Query: 128 VPSTMAQTDRDALVALYRATGGENWRESQNWDTDADLTTWHGVEVNDQGRVVKLKLRDNNLEGEIPATLGQLGNLQQLRLS 370
+ STM QTDRDALVALY A GG NW+ + NW+ DADL+ WHG+ +NDQGRVV++ L NNL+G IP LG L L++L LS
Sbjct: 47 ISSTMPQTDRDALVALYDAAGGFNWKNNGNWNADADLSKWHGININDQGRVVEVHLAANNLQGSIPEALGALSKLERLWLS 127
BLAST of mRNA_E-fasciculatus_F_contig1587.4025.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.340e-22 Identity = 51/86 (59.30%), Postives = 58/86 (67.44%), Query Frame = 2
Query: 134 STMAQTDRDALVALYRATGGENWRESQNWDTDADLTTWHGVEVNDQGRVVKLKLRDNNLEGEIPATLGQLGNLQQLRLSWNKLSGK 391
S + TDRDALVALY AT G NW+ QNW+TD L W GVE NDQGRVV L L DN L G IP+ LG L LQ+L L N+L G+
Sbjct: 106 SAIMSTDRDALVALYDATDGANWKSKQNWNTDLPLGRWRGVEANDQGRVVGLDLPDNKLHGHIPSDLGHLSALQKLNLLSNQLIGE 191
BLAST of mRNA_E-fasciculatus_F_contig1587.4025.1 vs. uniprot
Match: D8LFJ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ9_ECTSI) HSP 1 Score: 104 bits (259), Expect = 1.380e-22 Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 2
Query: 131 PSTMAQTDRDALVALYRATGGENWRESQNWDTDADLTTWHGVEVNDQGRVVKLKLRDNNLEGEIPATLGQLGNLQQLRLSW 373
P TMAQTDR+ALVALY A GG WR ++NW+T A L+ WHGVEVN QGRVV L L DNNL+G IP +LGNL L W
Sbjct: 22 PYTMAQTDREALVALYTAIGGAKWRNNRNWNTSAALSQWHGVEVNSQGRVVNLFLWDNNLQGRIPT---ELGNLHMLDTLW 99
BLAST of mRNA_E-fasciculatus_F_contig1587.4025.1 vs. uniprot
Match: D8LF65_ECTSI (Hypothetical leucine-rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF65_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 5.350e-22 Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 2
Query: 140 MAQTDRDALVALYRATGGENWRESQNWDTDADLTTWHGVEVNDQGRVVKLKLRDNNLEGEIPATLGQLGNLQQLRLS 370
M+ DR AL+AL+R+T G NW+ + NWDTDA+L TW GVEVND+GRVV+L L DNNL G IP LG L L L +S
Sbjct: 1 MSTMDRAALIALFRSTDGANWKTNSNWDTDAELATWAGVEVNDEGRVVQLILPDNNLHGPIPEALGTLNELTHLSMS 77
BLAST of mRNA_E-fasciculatus_F_contig1587.4025.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI) HSP 1 Score: 101 bits (252), Expect = 8.170e-21 Identity = 49/73 (67.12%), Postives = 53/73 (72.60%), Query Frame = 2
Query: 137 TMAQTDRDALVALYRATGGENWRESQNWDTDADLTTWHGVEVNDQGRVVKLKLRDNNLEGEIPATLGQLGNLQ 355
TMAQTDR ALVALY ATGG W+ +QNW T A L+ WHGVEVN QGRVVKL L NNL G IP LG L L+
Sbjct: 70 TMAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRGPIPKELGALSRLE 142
BLAST of mRNA_E-fasciculatus_F_contig1587.4025.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI) HSP 1 Score: 103 bits (257), Expect = 1.770e-20 Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 2
Query: 140 MAQTDRDALVALYRATGGENWRESQNWDTDADLTTWHGVEVNDQGRVVKLKLRDNNLEGEIPATLGQLGNLQQL 361
MA TDR+ALVAL+R+TGG WR+ NWDTDA + TWHGVEVN QGRVV L L N+L G IP LG L LQ+L
Sbjct: 1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAIATWHGVEVNAQGRVVNLSLGGNSLRGHIPPELGALSELQEL 74 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1587.4025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1587.4025.1 >prot_E-fasciculatus_F_contig1587.4025.1 ID=prot_E-fasciculatus_F_contig1587.4025.1|Name=mRNA_E-fasciculatus_F_contig1587.4025.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=305bp MAQTDRDALVALYRATGGENWRESQNWDTDADLTTWHGVEVNDQGRVVKLback to top mRNA from alignment at E-fasciculatus_F_contig1587:770..15121+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1587.4025.1 ID=mRNA_E-fasciculatus_F_contig1587.4025.1|Name=mRNA_E-fasciculatus_F_contig1587.4025.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=14352bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1587:770..15121+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1587:770..15121+ >mRNA_E-fasciculatus_F_contig1587.4025.1 ID=mRNA_E-fasciculatus_F_contig1587.4025.1|Name=mRNA_E-fasciculatus_F_contig1587.4025.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1830bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1587:770..15121+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |