mRNA_E-fasciculatus_F_contig15869.4024.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15869.4024.1
Unique NamemRNA_E-fasciculatus_F_contig15869.4024.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15869.4024.1 vs. uniprot
Match: D7FLG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG3_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 6.030e-35
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1
Query:    7 RYDKLKEDFKFNLGLIEDRDAELGRYEAALQGLKESLRDKEVEASEVKMRLDEALCVNRQAAARENEQQGY 219
            RYDKLKEDFKFNLGLIEDRD ELGRYEAALQGLKESLRDKEVEASEVKMRLDEALCVNRQAAARENEQQGY
Sbjct:  200 RYDKLKEDFKFNLGLIEDRDVELGRYEAALQGLKESLRDKEVEASEVKMRLDEALCVNRQAAARENEQQGY 270          
BLAST of mRNA_E-fasciculatus_F_contig15869.4024.1 vs. uniprot
Match: A0A7S2WNF5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WNF5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.880e-10
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    7 RYDKLKEDFKFNLGLIEDRDAELGRYEAALQGLKESLRDKEVEASEVKMRLDEALCVNRQAAARENEQQGY 219
            R+ KLKEDF++NL LIEDRD EL +Y+AA   +K  +RDKE E S++K+++ E     ++A  + NE +GY
Sbjct:  133 RFSKLKEDFQYNLKLIEDRDTELTKYDAAFAQVKSVVRDKEGEVSDLKIQVAEVETQLKRATNKSNELEGY 203          
BLAST of mRNA_E-fasciculatus_F_contig15869.4024.1 vs. uniprot
Match: A0A7S4DI13_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DI13_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 7.150e-10
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 ANRYDKLKEDFKFNLGLIEDRDAELGRYEAALQGLKESLRDKEVEASEVKMRLDEALCVNR 183
            A R+ KLKEDFKFNL LIE+RDAEL RY+  +  LK SLR  E  ASE     DEA    R
Sbjct:  114 AARFKKLKEDFKFNLNLIEERDAELQRYDTTVLALKASLRGAEAAASEAAAARDEAEAQRR 174          
BLAST of mRNA_E-fasciculatus_F_contig15869.4024.1 vs. uniprot
Match: A0A2R5GES0_9STRA (Proteasome assembly chaperone 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GES0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.490e-8
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    7 RYDKLKEDFKFNLGLIEDRDAELGRYEAALQGLKESLRDKEVEASEVKMRLDEALCVNRQAA--ARENE 207
            ++ KL EDF +NL LI DRDAEL +++ A   +KE + DKE EASE++M++D+       AA  ARENE
Sbjct:  387 KFAKLSEDFNYNLQLIADRDAELDKFDTAFAKVKEIISDKEAEASELRMQIDDLEAQLEAAAVRARENE 455          
BLAST of mRNA_E-fasciculatus_F_contig15869.4024.1 vs. uniprot
Match: A0A813RYQ2_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813RYQ2_9BILA)

HSP 1 Score: 57.0 bits (136), Expect = 9.710e-8
Identity = 26/58 (44.83%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    7 RYDKLKEDFKFNLGLIEDRDAELGRYEAALQGLKESLRDKEVEASEVKMRLDEALCVN 180
            ++++LKEDFKFNL L+E+RD+EL ++E  L  +++ L DK  E SE+K+++D+   +N
Sbjct:   45 KFNQLKEDFKFNLKLLEERDSELEKFEQTLTNVRKQLSDKNAEISELKIKIDDFKKLN 102          
BLAST of mRNA_E-fasciculatus_F_contig15869.4024.1 vs. uniprot
Match: A0A433T866_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433T866_ELYCH)

HSP 1 Score: 56.6 bits (135), Expect = 1.330e-7
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    4 NRYDKLKEDFKFNLGLIEDRDAELGRYEAALQGLKESLRDKEVEASEVKMRLDEAL-CVNRQAAARENEQQGY 219
            +++ +LKE FK+NL L+EDRD EL +Y+ + Q ++ SL  K  E SE+K+R+D+    +NR+   ++  Q  Y
Sbjct:   47 SKFHELKEHFKYNLKLLEDRDRELEKYDISFQEMRSSLNSKNAELSELKIRIDDLKNVINREEKTKDELQANY 119          
BLAST of mRNA_E-fasciculatus_F_contig15869.4024.1 vs. uniprot
Match: UPI001E1D61AE (coiled-coil domain-containing protein 57-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D61AE)

HSP 1 Score: 56.2 bits (134), Expect = 1.820e-7
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    7 RYDKLKEDFKFNLGLIEDRDAELGRYEAALQGLKESLRDKEVEASEVKMRLDEALC-VNRQAAARENEQQGY 219
            ++ KLKEDFK+NL L+E RD EL RY+A    +K  L  K  E SE K+ +DE    VN +  +RE  Q  Y
Sbjct:   50 KFQKLKEDFKYNLRLLEQRDQELDRYDATFSDIKAQLNAKNAEVSECKIHVDELRTQVNCEVKSREELQLHY 121          
BLAST of mRNA_E-fasciculatus_F_contig15869.4024.1 vs. uniprot
Match: C3Y945_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y945_BRAFL)

HSP 1 Score: 53.9 bits (128), Expect = 7.300e-7
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    7 RYDKLKEDFKFNLGLIEDRDAELGRYEAALQGLKESLRDKEVEASEVKMRLDEA-LCVNRQAAARENEQQGY 219
            ++ KLKEDFK+NL L+E+RD EL RY+A    +K     K  E SE+K+  D+    V+R+ AAR   Q+ Y
Sbjct:   51 KFQKLKEDFKYNLRLLEERDKELERYDAVFAEMKAKESAKNAEMSELKIAQDDLRTAVSREEAARAELQKHY 122          
BLAST of mRNA_E-fasciculatus_F_contig15869.4024.1 vs. uniprot
Match: A0A1S3HQW7_LINUN (coiled-coil domain-containing protein 57-like n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HQW7_LINUN)

HSP 1 Score: 54.3 bits (129), Expect = 8.710e-7
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    7 RYDKLKEDFKFNLGLIEDRDAELGRYEAALQGLKESLRDKEVEASEVKMRLDEALCVN--RQAAARENEQQGY 219
            ++ KLKEDFK+NL L+E+RD EL RY+A    LK ++  K  E SE+K++ DE LC +  R+  A+E  Q  Y
Sbjct:   51 KFMKLKEDFKYNLKLLEERDVELERYDAIFGELKAAINAKNGEISEMKIQQDE-LCASLKREEHAKEQLQMHY 122          
BLAST of mRNA_E-fasciculatus_F_contig15869.4024.1 vs. uniprot
Match: A0A6P4XUC6_BRABE (coiled-coil domain-containing protein 57-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4XUC6_BRABE)

HSP 1 Score: 54.3 bits (129), Expect = 8.710e-7
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    7 RYDKLKEDFKFNLGLIEDRDAELGRYEAALQGLKESLRDKEVEASEVKMRLDEA-LCVNRQAAARENEQQGY 219
            ++ KLKEDFK+NL L+E+RD EL RY+A    LK     K  E SE+K++ DE    V+R+  AR   Q+ Y
Sbjct:   51 KFQKLKEDFKYNLRLLEERDKELERYDAVFAELKAVENAKNAEMSELKIQQDELRTAVSREETARVELQKHY 122          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15869.4024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLG3_ECTSI6.030e-3598.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WNF5_9STRA1.880e-1047.89Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S4DI13_HETAK7.150e-1057.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2R5GES0_9STRA1.490e-849.28Proteasome assembly chaperone 2 n=1 Tax=Hondaea fe... [more]
A0A813RYQ2_9BILA9.710e-844.83Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A433T866_ELYCH1.330e-739.73Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
UPI001E1D61AE1.820e-745.83coiled-coil domain-containing protein 57-like n=1 ... [more]
C3Y945_BRAFL7.300e-744.44Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
A0A1S3HQW7_LINUN8.710e-746.58coiled-coil domain-containing protein 57-like n=2 ... [more]
A0A6P4XUC6_BRABE8.710e-745.83coiled-coil domain-containing protein 57-like n=4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15869contigE-fasciculatus_F_contig15869:1792..2445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.20565-CDS-E-fasciculatus_F_contig15869:1791..19171622928054.20565-CDS-E-fasciculatus_F_contig15869:1791..1917Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15869 1792..1917 +
1695995804.993576-CDS-E-fasciculatus_F_contig15869:1791..19171695995804.993576-CDS-E-fasciculatus_F_contig15869:1791..1917Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15869 1792..1917 +
1622928054.2186112-CDS-E-fasciculatus_F_contig15869:2352..24451622928054.2186112-CDS-E-fasciculatus_F_contig15869:2352..2445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15869 2353..2445 +
1695995805.0034828-CDS-E-fasciculatus_F_contig15869:2352..24451695995805.0034828-CDS-E-fasciculatus_F_contig15869:2352..2445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15869 2353..2445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15869.4024.1prot_E-fasciculatus_F_contig15869.4024.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15869 1792..2445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15869.4024.1

>prot_E-fasciculatus_F_contig15869.4024.1 ID=prot_E-fasciculatus_F_contig15869.4024.1|Name=mRNA_E-fasciculatus_F_contig15869.4024.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=73bp
ANRYDKLKEDFKFNLGLIEDRDAELGRYEAALQGLKESLRDKEVEASEVK
MRLDEALCVNRQAAARENEQQGY
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mRNA from alignment at E-fasciculatus_F_contig15869:1792..2445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15869.4024.1 ID=mRNA_E-fasciculatus_F_contig15869.4024.1|Name=mRNA_E-fasciculatus_F_contig15869.4024.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15869:1792..2445+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCAACAGGTACGACAAATTGAAGGAAGACTTCAAGTTTAACCTGGGTCT GATCGAGGACCGCGATGCTGAGCTGGGGCGGTACGAGGCTGCCTTGCAAG GGCTCAAGGAGAGCCTGCGAGATAAGGTCAGAATGAACTTGTTGCTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAACTGCTGTGGTTGTT TCTGTTGCTGCTGTTCTTGTTGTTGTCTGTGGTGGTGGTGCTGCTGCTGC CGCTGCTGCTGTTGTTGGTACTGATCTTGCTGCCGCTCGTCGAGACGTCG ATGTTTGTTCTTTGTGGGCACAACTGCCGTTGTTTGGGTGTCACACCGAT GTTCCCCGGAACCAAGAGGGCGCCCGTGAGTTCGCTCGCTTTCCTTCAAA GACGGGAACAGTAGCGATCGCCGTGCCGCGCGATGCCGTGGCTCCTAGGC ATCTCCTGAGTCCGAATATTGCTAGCGGGCTGCTTTCATGAGATAGTCGT CCATATTAGGAACTTTTCCTAACTTGCAATAAACAACAAATACAACGAAA CAAAATGACAGGAAGTCGAGGCTAGCGAGGTGAAGATGCGACTGGACGAG GCGTTGTGCGTGAACAGGCAGGCTGCGGCAAGGGAGAATGAACAGCAGGG CTAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15869:1792..2445+

>mRNA_E-fasciculatus_F_contig15869.4024.1 ID=mRNA_E-fasciculatus_F_contig15869.4024.1|Name=mRNA_E-fasciculatus_F_contig15869.4024.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15869:1792..2445+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCAACAGGTACGACAAATTGAAGGAAGACTTCAAGTTTAACCTGGGTCT
GATCGAGGACCGCGATGCTGAGCTGGGGCGGTACGAGGCTGCCTTGCAAG
GGCTCAAGGAGAGCCTGCGAGATAAGGCCAACAGGTACGACAAATTGAAG
GAAGACTTCAAGTTTAACCTGGGTCTGATCGAGGACCGCGATGCTGAGCT
GGGGCGGTACGAGGCTGCCTTGCAAGGGCTCAAGGAGAGCCTGCGAGATA
AGGAAGTCGAGGCTAGCGAGGTGAAGATGCGACTGGACGAGGCGTTGTGC
GTGAACAGGCAGGCTGCGGCAAGGGAGAATGAACAGCAGGGCTACGAAGT
CGAGGCTAGCGAGGTGAAGATGCGACTGGACGAGGCGTTGTGCGTGAACA
GGCAGGCTGCGGCAAGGGAGAATGAACAGCAGGGCTAC
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