mRNA_E-fasciculatus_F_contig15868.4023.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15868.4023.1
Unique NamemRNA_E-fasciculatus_F_contig15868.4023.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15868.4023.1 vs. uniprot
Match: D7FW63_ECTSI (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW63_ECTSI)

HSP 1 Score: 411 bits (1056), Expect = 2.940e-141
Identity = 204/218 (93.58%), Postives = 212/218 (97.25%), Query Frame = 1 
Query:   73 MRKQRVVRNRVPADILENAALNRAIERLPANYNFEIHKTVWRIREDKATNVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTNHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFDTVAVPQAKPLSPGEVLGCTSPVIDGKDALVFVADGRFHLEVGLL 726
            MRK R VRNR+PADILE+AALNRAIERLPANYNFEIHKTVWRIREDKA NVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKAL+CDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDT+HLAECIRRTFSRTTRLAVMGTIQFAGAVHESC+QLADHFD VAVPQAKPLSPGEVLGCTSPVI+GKDALVFVADGRFHLE  ++
Sbjct:    1 MRKHRAVRNRIPADILEDAALNRAIERLPANYNFEIHKTVWRIREDKANNVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALNCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTDHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCSQLADHFDAVAVPQAKPLSPGEVLGCTSPVIEGKDALVFVADGRFHLESAMI 218
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15868.4023.1 vs. uniprot
Match: A0A6H5JDJ2_9PHAE (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDJ2_9PHAE)

HSP 1 Score: 415 bits (1066), Expect = 7.020e-141
Identity = 207/218 (94.95%), Postives = 212/218 (97.25%), Query Frame = 1 
Query:   73 MRKQRVVRNRVPADILENAALNRAIERLPANYNFEIHKTVWRIREDKATNVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTNHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFDTVAVPQAKPLSPGEVLGCTSPVIDGKDALVFVADGRFHLEVGLL 726
            MRKQRVVRNR+PADILENAALNRAIERLP NYNFEI KTVWRIREDKA NVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDT+HLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFD VAVPQAKPLSPGEVLGCTSPVI+GKDALVFVADGRFHLE  ++
Sbjct:    1 MRKQRVVRNRIPADILENAALNRAIERLPVNYNFEIQKTVWRIREDKANNVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTDHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFDAVAVPQAKPLSPGEVLGCTSPVIEGKDALVFVADGRFHLESAMI 218
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15868.4023.1 vs. uniprot
Match: K3WYL2_GLOUD (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYL2_GLOUD)

HSP 1 Score: 298 bits (763), Expect = 1.890e-94
Identity = 143/224 (63.84%), Postives = 182/224 (81.25%), Query Frame = 1 
Query:   55 KKPAGRMRKQRVVRNRVPADILENAALNRAIERLPANYNFEIHKTVWRIREDKATNVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTNHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFDTVAVPQAKPLSPGEVLGCTSPVIDGKDALVFVADGRFHLEVGLL 726
            +KP+    K+R+  N++P DI  ++ L +A+E+LP NYNFEI KTVWRIR+  +  VALQFPEGLL+Y+CVISDI+E+F G  ++ILGDVTYGACC+DDLTA AL  D +VHYGHSCLVPI VT +K+LYVFV+ISID +HL EC++ TF   T++A+MGTIQFA ++H +  +LA HF  ++VPQAKPLSPGEVLGCTSPVIDG DALVF+ADGRFHLE  ++
Sbjct:   36 RKPSEAALKRRMA-NQIPEDIQNDSELTKAMEQLPWNYNFEIRKTVWRIRQANSKRVALQFPEGLLLYSCVISDIIERFTGADTIILGDVTYGACCVDDLTAIALGADFMVHYGHSCLVPIDVTTIKMLYVFVDISIDVDHLVECMKLTFKPDTKIALMGTIQFASSIHVASTKLAAHFSHLSVPQAKPLSPGEVLGCTSPVIDGVDALVFIADGRFHLEATMI 258
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15868.4023.1 vs. uniprot
Match: A0A6A4Z0R1_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z0R1_9STRA)

HSP 1 Score: 293 bits (751), Expect = 2.800e-94
Identity = 142/228 (62.28%), Postives = 182/228 (79.82%), Query Frame = 1 
Query:   43 KLGTKKPAGRMRKQRVVRNRVPADILENAALNRAIERLPANYNFEIHKTVWRIREDKATNVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTNHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFDTVAVPQAKPLSPGEVLGCTSPVIDGKDALVFVADGRFHLEVGLL 726
            KL  +KP+   +++++  N++P +I  +  L +AIE+LP NYNFEI KT+W+I++  A  VALQFPEGLL+YACVISDILE+FAG  S+I+GDVTYGACC+DDLTAKAL  D +VHYGHSCLVPI VT +K+LYVFV+I+ID +HL EC++ TF + T+LA+MGTIQFA A+H +  +L  HF  + VPQAKPLSPGEVLGCTSP    +DALVFVADGRFHLE  ++
Sbjct:   43 KLVKRKPSAAAQRRKMA-NQIPDEIQNDPQLTKAIEQLPWNYNFEIRKTIWKIKQAGAKRVALQFPEGLLLYACVISDILERFAGATSIIMGDVTYGACCVDDLTAKALGADFMVHYGHSCLVPIDVTTIKMLYVFVDITIDVSHLVECMKLTFPQHTKLALMGTIQFATAMHVAVTELKHHFHDIVVPQAKPLSPGEVLGCTSPQFPDRDALVFVADGRFHLESAMI 269
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15868.4023.1 vs. uniprot
Match: W4H661_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H661_9STRA)

HSP 1 Score: 293 bits (751), Expect = 1.280e-92
Identity = 142/228 (62.28%), Postives = 182/228 (79.82%), Query Frame = 1 
Query:   43 KLGTKKPAGRMRKQRVVRNRVPADILENAALNRAIERLPANYNFEIHKTVWRIREDKATNVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTNHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFDTVAVPQAKPLSPGEVLGCTSPVIDGKDALVFVADGRFHLEVGLL 726
            KL  +KP+   +++++  N++P +I  +  L +AIE+LP NYNFEI KT+W+I++  A  VALQFPEGLL+YACVISDILE+FAG  S+I+GDVTYGACC+DDLTAKAL  D +VHYGHSCLVPI VT +K+LYVFV+I+ID +HL EC++ TF + T+LA+MGTIQFA A+H +  +L  HF  + VPQAKPLSPGEVLGCTSP    +DALVFVADGRFHLE  ++
Sbjct:   41 KLVKRKPSAAAQRRKMA-NQIPDEIQNDPQLTKAIEQLPWNYNFEIRKTIWKIKQAGAKRVALQFPEGLLLYACVISDILERFAGATSIIMGDVTYGACCVDDLTAKALGADFMVHYGHSCLVPIDVTTIKMLYVFVDITIDVSHLVECMKLTFPQHTKLALMGTIQFATAMHVAVTELKHHFHDIVVPQAKPLSPGEVLGCTSPQFPDRDALVFVADGRFHLESAMI 267
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15868.4023.1 vs. uniprot
Match: A0A3R7MRI0_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MRI0_9STRA)

HSP 1 Score: 293 bits (751), Expect = 2.060e-92
Identity = 138/220 (62.73%), Postives = 181/220 (82.27%), Query Frame = 1 
Query:   55 KKPAGRMRKQRVVRNRVPADILENAALNRAIERLPANYNFEIHKTVWRIREDKATNVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTNHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFDTVAVPQAKPLSPGEVLGCTSPVIDGKDALVFVADGRFHLE 714
            +KP+    ++R+  N++P DI+++  L +AIE+LP NYNFE+ KTVWRIR+  +  VALQFPEGLL+YACVISDI+E+F G  S+ILGDVTYGACC+DDLTA AL  D +VHYGHSCLVPI +T +K+LYVFV+I+ID +HL +C++ TF+  T+LA+MGTIQF+ ++H   ++L D+F ++ VPQ KPLSPGEVLGCTSPVI+G DALVF+ADGRFHLE
Sbjct:   55 RKPSAAALRRRMA-NQIPDDIMKDPELTKAIEQLPWNYNFELRKTVWRIRQAGSKRVALQFPEGLLLYACVISDIIERFTGADSIILGDVTYGACCVDDLTALALGADFMVHYGHSCLVPITITTIKMLYVFVDIAIDVDHLVDCVKLTFTPDTKLALMGTIQFSSSIHLVQSRLKDYFSSLVVPQVKPLSPGEVLGCTSPVIEGVDALVFIADGRFHLE 273
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15868.4023.1 vs. uniprot
Match: A0A485LIZ1_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIZ1_9STRA)

HSP 1 Score: 292 bits (748), Expect = 4.060e-92
Identity = 139/228 (60.96%), Postives = 182/228 (79.82%), Query Frame = 1 
Query:   43 KLGTKKPAGRMRKQRVVRNRVPADILENAALNRAIERLPANYNFEIHKTVWRIREDKATNVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTNHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFDTVAVPQAKPLSPGEVLGCTSPVIDGKDALVFVADGRFHLEVGLL 726
            K+  +KP+   +++++  N++P +I  +  L +AIE+LP NYNFEI KT+W+I++  A  VALQFPEGLL+Y+CVISDI+E+FAG  S+I+GDVTYGACC+DDLTAKAL  D +VHYGHSCLVPI +T +K+LYVFV+I+ID  HL EC++ TF   T+LA+MGTIQFA A+H +  QL  HF+ + VPQAKPLSPGEVLGCTSP+   +DALVFVADGRFHLE  ++
Sbjct:   47 KMVKRKPSAAAQRRKMA-NQIPDEIQNDPELTKAIEQLPWNYNFEIRKTIWKIKQADAKRVALQFPEGLLLYSCVISDIIERFAGATSIIMGDVTYGACCVDDLTAKALGADFMVHYGHSCLVPIDITTIKMLYVFVDITIDVTHLIECMKLTFQPDTKLALMGTIQFATAMHVALNQLKQHFNDIVVPQAKPLSPGEVLGCTSPLFPDRDALVFVADGRFHLESAMI 273
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15868.4023.1 vs. uniprot
Match: A0A835ZHS6_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHS6_9STRA)

HSP 1 Score: 291 bits (746), Expect = 4.300e-92
Identity = 142/216 (65.74%), Postives = 173/216 (80.09%), Query Frame = 1 
Query:  100 RVPADILENAALNRAIERLPANYNFEIHKTVWRIRE---DKATN---VALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTNHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFDTVAVPQAKPLSPGEVLGCTSPVIDGKDALVFVADGRFHLEVGLLD 729
            RVP  I  +  L  A+  LPANYNFEI KT+W+I+E   + A     VALQFPEGLLMY+C I+DILE+FAGC+ V+LGDVTYGACCIDDLTAK+L CDM+VHYGHSCLVP++ T ++ LYVFVEI+ID +HL EC+++TF+  T +A+MGTIQFA AVHE+  +LA+H    +VPQAKPLSPGEVLGCTSP IDGK ALVFVADGRFHLE  ++ 
Sbjct:   37 RVPDSITNDPQLAVAMAALPANYNFEIPKTIWKIQELVREAAVGMPKVALQFPEGLLMYSCAIADILERFAGCECVVLGDVTYGACCIDDLTAKSLGCDMMVHYGHSCLVPVSATVIRCLYVFVEIAIDVDHLCECVKKTFAAGTEVALMGTIQFASAVHEARTRLAEHLPGTSVPQAKPLSPGEVLGCTSPAIDGKTALVFVADGRFHLESAMIQ 252
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15868.4023.1 vs. uniprot
Match: A0A3M6V8U3_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8U3_9STRA)

HSP 1 Score: 290 bits (743), Expect = 3.900e-91
Identity = 139/224 (62.05%), Postives = 181/224 (80.80%), Query Frame = 1 
Query:   55 KKPAGRMRKQRVVRNRVPADILENAALNRAIERLPANYNFEIHKTVWRIREDKATNVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTNHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFDTVAVPQAKPLSPGEVLGCTSPVIDGKDALVFVADGRFHLEVGLL 726
            +KP+    K+R+  N +P +I  ++ L +AIE+LP NYNFEI KTVWRIR+  +  VALQFPEGLL+YACVISDI+E+F G  S+ILGDVTYGACC+DDL+A AL  D +VHYGHSCLVPI VT++K+LYVFV+I+ID +HL +C++ TF+  T+LA+MGTIQF+ ++H   ++L D+F ++ VPQ KPLSPGEVLGCTSPVI G DALVF+ADGRFHLE  ++
Sbjct:   62 RKPSAAALKRRMA-NHIPDEITNDSELTKAIEQLPWNYNFEIRKTVWRIRQAGSKRVALQFPEGLLLYACVISDIIERFTGADSIILGDVTYGACCVDDLSALALGADFMVHYGHSCLVPIDVTSIKMLYVFVDIAIDVDHLVDCMKLTFAPDTKLALMGTIQFSSSIHLISSRLKDYFTSMVVPQVKPLSPGEVLGCTSPVIKGVDALVFIADGRFHLESAMI 284
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15868.4023.1 vs. uniprot
Match: A0A067CU80_SAPPC (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU80_SAPPC)

HSP 1 Score: 290 bits (741), Expect = 4.560e-91
Identity = 140/235 (59.57%), Postives = 182/235 (77.45%), Query Frame = 1 
Query:   34 CCRKLGT----KKPAGRMRKQRVVRNRVPADILENAALNRAIERLPANYNFEIHKTVWRIREDKATNVALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALDCDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTNHLAECIRRTFSRTTRLAVMGTIQFAGAVHESCAQLADHFDTVAVPQAKPLSPGEVLGCTSPVIDGKDALVFVADGRFHLEVGLL 726
            CC    T    KKP+    ++++  N++P +I  +  L +AIE+LP NYNFEI KT+W++++  +  VALQFPEGLL+YACVISDI+E+FAG   +I+GDVTYGACC+DDLTAKAL  D +VHYGHSCLVPI VT +K+LYVFV+ISID  HL EC++ TF+ +T+LA+MGTIQFA A+H +  +L  +F  + VPQAKPLSPGEVLGCTSP+   +DALVFVADGRFHLE  ++
Sbjct:   36 CCNSEATTLVKKKPSAAALRRKMA-NQIPDEIQNDPELGKAIEQLPWNYNFEIRKTIWKLKQANSKRVALQFPEGLLLYACVISDIIERFAGATCIIMGDVTYGACCVDDLTAKALGADFMVHYGHSCLVPIDVTTIKMLYVFVDISIDVTHLIECMKLTFAPSTKLALMGTIQFATAMHLALTELKSYFSDIVVPQAKPLSPGEVLGCTSPLFPDRDALVFVADGRFHLESAMI 269
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15868.4023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW63_ECTSI2.940e-14193.582-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A6H5JDJ2_9PHAE7.020e-14194.952-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
K3WYL2_GLOUD1.890e-9463.842-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A6A4Z0R1_9STRA2.800e-9462.282-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
W4H661_9STRA1.280e-9262.282-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A3R7MRI0_9STRA2.060e-9262.732-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A485LIZ1_9STRA4.060e-9260.962-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A835ZHS6_9STRA4.300e-9265.742-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A3M6V8U3_9STRA3.900e-9162.052-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A067CU80_SAPPC4.560e-9159.572-(3-amino-3-carboxypropyl)histidine synthase subu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15868contigE-fasciculatus_F_contig15868:111..2908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score416.0
Seed ortholog evalue1.1e-113
Seed eggNOG ortholog2880.D7FW63
Preferred nameDPH1
KEGG rclassRC00021,RC03180
KEGG koko:K07561
KEGG ReactionR10455
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006417,GO:0006448,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0030054,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:1900247,GO:1901564,GO:2000112,GO:2000765
EggNOG free text desc.Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2
EggNOG OGsCOG1736@1,KOG2648@2759
EC2.5.1.108
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDiphthamide biosynthesis protein 1, putative
Ec32 orthologEc-01_003550.1
Exons3
Model size1194
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15868.4023.1prot_E-fasciculatus_F_contig15868.4023.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15868 183..2464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.1219923-UTR-E-fasciculatus_F_contig15868:110..1821622928054.1219923-UTR-E-fasciculatus_F_contig15868:110..182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15868 111..182 +
1695995804.9249184-UTR-E-fasciculatus_F_contig15868:110..1821695995804.9249184-UTR-E-fasciculatus_F_contig15868:110..182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15868 111..182 +
1622928054.1721208-UTR-E-fasciculatus_F_contig15868:2464..29081622928054.1721208-UTR-E-fasciculatus_F_contig15868:2464..2908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15868 2465..2908 +
1695995804.9837584-UTR-E-fasciculatus_F_contig15868:2464..29081695995804.9837584-UTR-E-fasciculatus_F_contig15868:2464..2908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15868 2465..2908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.1391892-CDS-E-fasciculatus_F_contig15868:182..3171622928054.1391892-CDS-E-fasciculatus_F_contig15868:182..317Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15868 183..317 +
1695995804.9455943-CDS-E-fasciculatus_F_contig15868:182..3171695995804.9455943-CDS-E-fasciculatus_F_contig15868:182..317Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15868 183..317 +
1622928054.1504755-CDS-E-fasciculatus_F_contig15868:1518..18211622928054.1504755-CDS-E-fasciculatus_F_contig15868:1518..1821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15868 1519..1821 +
1695995804.95657-CDS-E-fasciculatus_F_contig15868:1518..18211695995804.95657-CDS-E-fasciculatus_F_contig15868:1518..1821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15868 1519..1821 +
1622928054.160279-CDS-E-fasciculatus_F_contig15868:2224..24641622928054.160279-CDS-E-fasciculatus_F_contig15868:2224..2464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15868 2225..2464 +
1695995804.9716678-CDS-E-fasciculatus_F_contig15868:2224..24641695995804.9716678-CDS-E-fasciculatus_F_contig15868:2224..2464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15868 2225..2464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15868.4023.1

>prot_E-fasciculatus_F_contig15868.4023.1 ID=prot_E-fasciculatus_F_contig15868.4023.1|Name=mRNA_E-fasciculatus_F_contig15868.4023.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=226bp
MRKQRVVRNRVPADILENAALNRAIERLPANYNFEIHKTVWRIREDKATN
VALQFPEGLLMYACVISDILEQFAGCQSVILGDVTYGACCIDDLTAKALD
CDMLVHYGHSCLVPIAVTAVKVLYVFVEISIDTNHLAECIRRTFSRTTRL
AVMGTIQFAGAVHESCAQLADHFDTVAVPQAKPLSPGEVLGCTSPVIDGK
DALVFVADGRFHLEVGLLDLLEFAR*
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mRNA from alignment at E-fasciculatus_F_contig15868:111..2908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15868.4023.1 ID=mRNA_E-fasciculatus_F_contig15868.4023.1|Name=mRNA_E-fasciculatus_F_contig15868.4023.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2798bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15868:111..2908+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCAACCTTTGGAGCCTATCCACCACAGGCGCTGCTGCAGGAAATTGGG
CACCAAAAAGCCAGCCGGCCGCATGAGGAAGCAACGCGTTGTGCGTAACC
GTGTACCGGCTGATATCTTGGAGAATGCTGCGCTGAATCGGGCCATCGAG
CGGTTGCCCGCGAACTACAACTTCGAAATCCACAAGACTGTTTGGCGAAT
TCGCGAGGTAGGCCACAAGTAGCCACCCGTGCTTCAGCAGCATACCAGTA
GGCAAGCGCGCAATTGAGCAGGGACTATACGCGAATCGGTAAAGCGCAAA
CTCCACCTGTCCTAAAAACCACGGCTACAGCCACCAAAGCACGTAAAATG
CAGATAAACTTGCCCCTAACTGTCCAAGGGAAGGTAGGGGGTCTCGGGTG
AATTCTACACTACACAATACATGCATAGCATACCATACACCCCATCGCCC
AGTACCATTTCGAGGTCCCTGTTTGTGCCGGTTGAATAGTGCCGGTGCCC
AGTACCGTGCCGGTGTTTTCGGCAGGAACACCTGGATTTCCAAGGCATTC
TCAAAACATTCGACCCCGCTTTAAGGACACCCATGAGTTTCTTGCCGGGG
TCAACGGAGGCGTAACGTACGTCGAAAGACGCGCAATTGCAGGGATACTG
TACATGTAGACGAGAAGGAGTATGCTAAATCGATCACAGTGTCATGATGG
GTGAAAGTCGCACGTCAGTTCTAATATACTACGGCGTTTGCCGTTGAACT
TTTGCATTGTACTTCGAACAGTTGGTGCAGTGCTGCAGAACGAGGTATGC
AACCTTCATTACATAGTACCTCCGCCAGCAGGCTACGCGGTACGCGGCAT
TTCAATTTTTGAGGGCTGTGTTAGCAGTGTCGATGCAGAGCTCAACAACA
CTCCCCGTCCCGCGCTGTTTATGGCCAATGCGTGGAAGACGTGCGTAGAG
AGCTTCCTCACCAAACTGCTGTATTGTGGAACAGGCTCAAGCAAGACGAA
GATATTCTTGCATCCTTTGAAGCCTGGGAGTGTTCATCTTCAGGTTTCAG
TCCCGCCGACCAGACCAATCGCGCTATGTATGTCACTTTGGAAAAAATGA
TACACAAGTCAAATGAGGAGGCCAGCCGTACATCGCCGGTAGCAATTGTT
GTGGACTATACATTGTAGGAGAACTCGTGCAATGCTTGTACAACATACAC
AGGTAATCTCCTTTTTTTGTTGCCTTCTCCGCTGACGAGGTGGTGTGAGC
AACGGCTTAAAAACACCCAACGTTGTTCAACTCCGATTCCTATGACCTAA
CGGACCACCCGTTTGTGTGGTTATGATTGAAAGCATTCATGTCTGAATAC
ACCACACTTTCGACGATCGGTTGGCATCTGTGTCGGTCCTAACGCTGCGT
TTATCCAGGACAAAGCAACCAATGTGGCTCTGCAGTTTCCTGAAGGGCTC
CTGATGTATGCCTGCGTCATTTCAGACATCCTTGAGCAATTCGCTGGGTG
CCAGTCCGTGATTCTTGGTGACGTTACGTACGGCGCCTGCTGCATCGACG
ACCTCACGGCAAAGGCACTGGACTGCGATATGCTAGTCCACTACGGGCAC
AGCTGCTTGGTGCCCATCGCAGTAACAGCGGTGAAGGTCCTCTACGTATT
CGTGGAGATATCCATCGACACGAACCACTTGGCAGAGTGCATCCGACGCA
CTTTCTCGCGGGTGAGGCTTCCCTTGTATTTTAGACCAATGGCACGTAGG
AACACATCACTACAGTATAATTCCGTATAAAACGTTCGACAGTTTGTCTA
AGGGTAGTATTGTAATTTTGACTTGCGTTGAGGTGACGAATTGCATTGCC
GCCTGGTTCAGGGAGTGAAATCATCAGTAATGTCTTGTATTTTCTGTTTT
TCTTGGTGAATCCCATCTATTAGTGTGAACGCGTGCTGAGATTGCACCTT
TCAGTGTTATGCGAACGTCACAAGCGGGAACACAAGAATGAATATTCTCT
TGACAAGAAAACGGGAAAGCATCATACCGGTAAGTGTTTCCTGTCCTTCC
TTAGCATCGTGCGCCATACTCACGGCATCACCCTGCCGTGCCCGTCTACC
GCACTACTATGCAGACGACCCGCCTAGCCGTCATGGGAACTATTCAGTTC
GCGGGCGCAGTTCACGAAAGCTGTGCACAGCTGGCAGACCATTTCGACAC
AGTGGCAGTTCCCCAAGCCAAGCCTCTGTCGCCCGGCGAGGTTCTGGGGT
GCACGTCACCCGTGATTGACGGGAAGGACGCATTGGTGTTTGTGGCTGAC
GGGCGATTTCATCTTGAGGTGGGTTTACTTGACCTGTTGGAGTTTGCGCG
GTAGACCGCCGAAGGTATTTCATTTTTGGTTCGAATTATCTTGACAAGTC
GTATTTATTAGCAAACAGCAGTGCTTCGATTCGACTACTGATTGGAGGGC
TTGCAACACGAAACCGTGTCGACCCTTCGGCATAGCACCTGCGGTTCCCT
GCGACTTGCCCGGTTACGCTGCCAGATCGCTAGGCTGCACGGTGACTTGC
GCCACTATCATGCGGTGGTGTTCCCGAGCCTGTTCGTGCTTGGTGAACAA
TCCGTATTGTACGCTCTCAGGAAGGCCAATAGTTCAAATTCCACGAAATC
AAGATCAACCTTTGTTTTTCGGCCCGAAACCTTCGATGGTGTTTCGAGCA
AAATCCAGGTCTCAAGCGACAATATTTACCCACGACGACGGGCACCCTGG
AGTAGGGGGGGGGGGTGTACTCAGTATCATGCATGCCGTAGTCGTTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15868:111..2908+

>mRNA_E-fasciculatus_F_contig15868.4023.1 ID=mRNA_E-fasciculatus_F_contig15868.4023.1|Name=mRNA_E-fasciculatus_F_contig15868.4023.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15868:111..2908+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGAAGCAACGCGTTGTGCGTAACCGTGTACCGGCTGATATCTTGGA
GAATGCTGCGCTGAATCGGGCCATCGAGCGGTTGCCCGCGAACTACAACT
TCGAAATCCACAAGACTGTTTGGCGAATTCGCGAGATGAGGAAGCAACGC
GTTGTGCGTAACCGTGTACCGGCTGATATCTTGGAGAATGCTGCGCTGAA
TCGGGCCATCGAGCGGTTGCCCGCGAACTACAACTTCGAAATCCACAAGA
CTGTTTGGCGAATTCGCGAGGACAAAGCAACCAATGTGGCTCTGCAGTTT
CCTGAAGGGCTCCTGATGTATGCCTGCGTCATTTCAGACATCCTTGAGCA
ATTCGCTGGGTGCCAGTCCGTGATTCTTGGTGACGTTACGTACGGCGCCT
GCTGCATCGACGACCTCACGGCAAAGGCACTGGACTGCGATATGCTAGTC
CACTACGGGCACAGCTGCTTGGTGCCCATCGCAGTAACAGCGGTGAAGGT
CCTCTACGTATTCGTGGAGATATCCATCGACACGAACCACTTGGCAGAGT
GCATCCGACGCACTTTCTCGCGGGACAAAGCAACCAATGTGGCTCTGCAG
TTTCCTGAAGGGCTCCTGATGTATGCCTGCGTCATTTCAGACATCCTTGA
GCAATTCGCTGGGTGCCAGTCCGTGATTCTTGGTGACGTTACGTACGGCG
CCTGCTGCATCGACGACCTCACGGCAAAGGCACTGGACTGCGATATGCTA
GTCCACTACGGGCACAGCTGCTTGGTGCCCATCGCAGTAACAGCGGTGAA
GGTCCTCTACGTATTCGTGGAGATATCCATCGACACGAACCACTTGGCAG
AGTGCATCCGACGCACTTTCTCGCGGACGACCCGCCTAGCCGTCATGGGA
ACTATTCAGTTCGCGGGCGCAGTTCACGAAAGCTGTGCACAGCTGGCAGA
CCATTTCGACACAGTGGCAGTTCCCCAAGCCAAGCCTCTGTCGCCCGGCG
AGGTTCTGGGGTGCACGTCACCCGTGATTGACGGGAAGGACGCATTGGTG
TTTGTGGCTGACGGGCGATTTCATCTTGAGGTGGGTTTACTTGACCTGTT
GGAGTTTGCGCGGTAGACGACCCGCCTAGCCGTCATGGGAACTATTCAGT
TCGCGGGCGCAGTTCACGAAAGCTGTGCACAGCTGGCAGACCATTTCGAC
ACAGTGGCAGTTCCCCAAGCCAAGCCTCTGTCGCCCGGCGAGGTTCTGGG
GTGCACGTCACCCGTGATTGACGGGAAGGACGCATTGGTGTTTGTGGCTG
ACGGGCGATTTCATCTTGAGGTGGGTTTACTTGACCTGTTGGAGTTTGCG
CGGTAG
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