mRNA_E-fasciculatus_F_contig1586.4020.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1586.4020.1 vs. uniprot
Match: D7G7A8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A8_ECTSI) HSP 1 Score: 397 bits (1020), Expect = 3.520e-134 Identity = 205/233 (87.98%), Postives = 210/233 (90.13%), Query Frame = 1
Query: 745 MRGATTIKIGEGGRGSHRQVILQGATAASKEGHLRLPDQFYQGVHFGVSAWDVWGEKLTDAENRRRNGALRQMLEGQDPQPTGIYPTTFEGGVEGFTVAFLAGSLGRQEMRSVRERSDPAWAEAETSVFAAARHFQQLTVTKWHPKVWGPGHERDPDLHTSVLQEVLPTRTGLRTLASTVVVYRVETAVPLPAAATLGDTATTTTT--KVSVTAARAERKARKTDAEASRPGN 1437
MRGATTI IG+GGRGSHRQVILQGAT A KEGHLRLPDQF+QGVHFGVSAWDVWGEKL DAENR+RNGALRQ+LEGQDPQPT IYPT FEGGVEGFTVAFLAGSL RQEMRSVRERSDPAWAEAETSV AARHFQQLTVTKWHPKVWGPGHERD +LHTSVLQEVLPTRTGLR L S VVVYRVETAVPLPAA T DTA KVSVTAARAERKARKTDAEASRPGN
Sbjct: 1 MRGATTITIGDGGRGSHRQVILQGATVAPKEGHLRLPDQFFQGVHFGVSAWDVWGEKLMDAENRKRNGALRQVLEGQDPQPTFIYPTMFEGGVEGFTVAFLAGSLSRQEMRSVRERSDPAWAEAETSVLTAARHFQQLTVTKWHPKVWGPGHERDENLHTSVLQEVLPTRTGLRALTSAVVVYRVETAVPLPAATTTEDTAXXXXXXXKVSVTAARAERKARKTDAEASRPGN 233
BLAST of mRNA_E-fasciculatus_F_contig1586.4020.1 vs. uniprot
Match: A0A7S2SW41_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW41_9STRA) HSP 1 Score: 105 bits (261), Expect = 3.870e-21 Identity = 59/166 (35.54%), Postives = 92/166 (55.42%), Query Frame = 1
Query: 841 HLRLPDQFYQGVHFGVSAWDVWGEKLTDAENRRRNGALRQMLEGQDPQPTGIYPTTFEGG-----VEGFTVAFLAGSLGRQEMRSVRERSDPA-WAEAETSVFAAARHFQQLTVTKWHPKVWGPGHERDPDLHTSVLQEVLPTRTGLRTLASTVVVYRVETAVPLP 1320
H++LPD++Y+ VH GVS +D+ T + R+++ L L P+PT + P E +EG+ V F L Q++ +R D A WA+A +V + AR + QL + +W+ WG + D H+SVLQE++P R+GL+ L S+ V YRV +P P
Sbjct: 170 HMKLPDEWYKCVHIGVSTYDMVSPNNTREDQRQQSSELYDALISLTPEPTAVLPWVCETNTTYWTIEGWAVRFCYDHL--QDLGFLRPGVDKARWAKASKAVESVARRYDQLLIMQWYSYEWGHPPDDSSDPHSSVLQEIVPIRSGLQPLRSSAVAYRVNAELPPP 333
BLAST of mRNA_E-fasciculatus_F_contig1586.4020.1 vs. uniprot
Match: A0A836CRC1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRC1_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 2.250e-11 Identity = 42/97 (43.30%), Postives = 50/97 (51.55%), Query Frame = 1
Query: 1024 EGFTVAFLAGSLGRQEMRSVRERSDPAWAEAETSVFAAARHFQQLTVTKWHPKVWGPGHER-------DPDLHTSVLQEVLPTRTGLRTLASTVVVY 1293
EGF V + SL + R+ P W A +V ARHFQQ V +W+P VWG G D HTSVLQ V PTRTGL+ L S+ V Y
Sbjct: 254 EGFIVEYALSSLAAAAGGAKHTRAAPIWGPAREAVLRTARHFQQFAVYEWYPTVWGEGAAAAAAGVGGDAHRHTSVLQVVTPTRTGLQALRSSAVAY 350
BLAST of mRNA_E-fasciculatus_F_contig1586.4020.1 vs. uniprot
Match: A0A7S2CPZ2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPZ2_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 9.690e-11 Identity = 65/253 (25.69%), Postives = 103/253 (40.71%), Query Frame = 1
Query: 697 RRIPPADEQAFLHDSRMRGATTIKIGEGGRGSHRQVILQGATAASKEGHLRLPDQFYQGVHFGVSA---------------WD---------------VWGEKLTDAENRRR-----NGA--LRQMLEGQDPQPTGIYP-------TTFEGGVEGFTVAFLAGSLGRQEMRSVRERSDPAWAEAETSVFAAARHFQQLTVTKWHPKVWGPGHERDPDLHTSVLQEVLPTRTGLRTLASTVVVYRVETAVPLPA 1323
RRIP EQ + + + + + + G++ + + + RLP+ +Y +H GVSA WD W E+ +A R+ N L Q+ + + +P+ + T++ V+G+ V F L Q + A V AR F Q V W+P WG G D LHT+VLQE++PTR+G++ + S VV+R+ VP PA
Sbjct: 186 RRIPAEHEQMAMKRALLYSHSVVGVSADEEGTNVTLGMFARSDFEDVAQARLPEVWYHCMHVGVSALDFFDPDLASLSVSDWDDDEFYSTLHESPDDREWHEERGEAWKARKLEVDQNSVEMLEQLWDLRPARPSAVLNWDIASNVTSWPWRVQGWVVRFCPEDLAAQGELGSGPTPKSRFEHAAEGVAVVARRFGQNIVLHWYPHQWGKGALHDEHLHTNVLQEIVPTRSGMQAVRSHGVVWRIGGPVPKPA 438 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1586.4020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1586.4020.1 >prot_E-fasciculatus_F_contig1586.4020.1 ID=prot_E-fasciculatus_F_contig1586.4020.1|Name=mRNA_E-fasciculatus_F_contig1586.4020.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=404bp MTLDDQPGERQPVQRRVSYRRLRGEDNSEANTGNGGGGTNLDSHSGPDGSback to top mRNA from alignment at E-fasciculatus_F_contig1586:8660..13449+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1586.4020.1 ID=mRNA_E-fasciculatus_F_contig1586.4020.1|Name=mRNA_E-fasciculatus_F_contig1586.4020.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4790bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1586:8660..13449+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1586:8660..13449+ >mRNA_E-fasciculatus_F_contig1586.4020.1 ID=mRNA_E-fasciculatus_F_contig1586.4020.1|Name=mRNA_E-fasciculatus_F_contig1586.4020.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2424bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1586:8660..13449+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |