mRNA_E-fasciculatus_F_contig1586.4021.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1586.4021.1
Unique NamemRNA_E-fasciculatus_F_contig1586.4021.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1586.4021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1586contigE-fasciculatus_F_contig1586:15797..16417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size621
Cds size504
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928053.460571-CDS-E-fasciculatus_F_contig1586:15796..163001622928053.460571-CDS-E-fasciculatus_F_contig1586:15796..16300Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1586 15797..16300 +
1695995804.7314868-CDS-E-fasciculatus_F_contig1586:15796..163001695995804.7314868-CDS-E-fasciculatus_F_contig1586:15796..16300Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1586 15797..16300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928053.472318-UTR-E-fasciculatus_F_contig1586:16300..164171622928053.472318-UTR-E-fasciculatus_F_contig1586:16300..16417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1586 16301..16417 +
1695995804.7405481-UTR-E-fasciculatus_F_contig1586:16300..164171695995804.7405481-UTR-E-fasciculatus_F_contig1586:16300..16417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1586 16301..16417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1586.4021.1prot_E-fasciculatus_F_contig1586.4021.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1586 15797..16300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1586.4021.1

>prot_E-fasciculatus_F_contig1586.4021.1 ID=prot_E-fasciculatus_F_contig1586.4021.1|Name=mRNA_E-fasciculatus_F_contig1586.4021.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=168bp
ARNPRRQHHRRAPDASEGLDTLHLLHRGNELPAANSRAHRTRSHGAQRSR
TDPSLDGKGTKQASVQGNTTGWRALPAALAWVSQTALVFSNNTRSCCSRM
KKLPTYVTQDTSHPGSNIKARLLHDDDDAENKARCYRKTLHETVRTPPFL
STATTILLIFCCRLIEP*
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mRNA from alignment at E-fasciculatus_F_contig1586:15797..16417+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1586.4021.1 ID=mRNA_E-fasciculatus_F_contig1586.4021.1|Name=mRNA_E-fasciculatus_F_contig1586.4021.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=621bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1586:15797..16417+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAGAAATCCGCGACGCCAACATCACCGTCGCGCACCAGATGCATCTGA
GGGGTTGGATACGCTGCACCTACTACATCGTGGCAATGAACTACCCGCAG
CAAATTCACGGGCACATCGTACACGATCACATGGTGCCCAAAGGTCTCGG
ACCGATCCTAGTCTAGACGGGAAGGGCACCAAACAAGCGAGCGTGCAAGG
GAACACTACCGGCTGGAGGGCACTACCGGCTGCCCTGGCGTGGGTAAGCC
AGACCGCCCTGGTGTTCTCAAATAACACGAGATCCTGCTGCTCCAGAATG
AAGAAACTACCTACGTATGTGACACAAGATACCTCACACCCTGGATCGAA
TATTAAAGCTCGACTACTGCACGACGACGATGATGCCGAAAATAAAGCGA
GATGTTATCGGAAAACTCTCCACGAGACCGTTCGAACGCCGCCCTTTCTC
AGCACCGCCACTACAATACTACTGATTTTCTGCTGCAGACTAATCGAACC
TTGAAACTCGATCCACCAGGAGGTGTGGTGTCCGATGCTACCTACGGTGA
AGCCAAGTGCTACACGCATGTCCCCGCGGTTTTTTCGTTTTCCTTGTCAT
TCGTACCGTACACTTTCACTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1586:15797..16417+

>mRNA_E-fasciculatus_F_contig1586.4021.1 ID=mRNA_E-fasciculatus_F_contig1586.4021.1|Name=mRNA_E-fasciculatus_F_contig1586.4021.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1586:15797..16417+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAGAAATCCGCGACGCCAACATCACCGTCGCGCACCAGATGCATCTGA
GGGGTTGGATACGCTGCACCTACTACATCGTGGCAATGAACTACCCGCAG
CAAATTCACGGGCACATCGTACACGATCACATGGTGCCCAAAGGTCTCGG
ACCGATCCTAGTCTAGACGGGAAGGGCACCAAACAAGCGAGCGTGCAAGG
GAACACTACCGGCTGGAGGGCACTACCGGCTGCCCTGGCGTGGGTAAGCC
AGACCGCCCTGGTGTTCTCAAATAACACGAGATCCTGCTGCTCCAGAATG
AAGAAACTACCTACGTATGTGACACAAGATACCTCACACCCTGGATCGAA
TATTAAAGCTCGACTACTGCACGACGACGATGATGCCGAAAATAAAGCGA
GATGTTATCGGAAAACTCTCCACGAGACCGTTCGAACGCCGCCCTTTCTC
AGCACCGCCACTACAATACTACTGATTTTCTGCTGCAGACTAATCGAACC
TTGAGCGAGAAATCCGCGACGCCAACATCACCGTCGCGCACCAGATGCAT
CTGAGGGGTTGGATACGCTGCACCTACTACATCGTGGCAATGAACTACCC
GCAGCAAATTCACGGGCACATCGTACACGATCACATGGTGCCCAAAGGTC
TCGGACCGATCCTAGTCTAGACGGGAAGGGCACCAAACAAGCGAGCGTGC
AAGGGAACACTACCGGCTGGAGGGCACTACCGGCTGCCCTGGCGTGGGTA
AGCCAGACCGCCCTGGTGTTCTCAAATAACACGAGATCCTGCTGCTCCAG
AATGAAGAAACTACCTACGTATGTGACACAAGATACCTCACACCCTGGAT
CGAATATTAAAGCTCGACTACTGCACGACGACGATGATGCCGAAAATAAA
GCGAGATGTTATCGGAAAACTCTCCACGAGACCGTTCGAACGCCGCCCTT
TCTCAGCACCGCCACTACAATACTACTGATTTTCTGCTGCAGACTAATCG
AACCTTGA
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