mRNA_E-fasciculatus_F_contig15857.4017.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15857.4017.1
Unique NamemRNA_E-fasciculatus_F_contig15857.4017.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15857.4017.1 vs. uniprot
Match: D7FPJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPJ3_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 1.250e-120
Identity = 179/182 (98.35%), Postives = 180/182 (98.90%), Query Frame = 1 
Query:    4 QGIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKTCLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNLAQV 549
            QGIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTP SYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIK CLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNLAQ+
Sbjct:  229 QGIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPPSYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKACLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNLAQM 410
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BLAST of mRNA_E-fasciculatus_F_contig15857.4017.1 vs. uniprot
Match: A0A7S2W394_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W394_9STRA)

HSP 1 Score: 268 bits (684), Expect = 2.130e-85
Identity = 127/178 (71.35%), Postives = 146/178 (82.02%), Query Frame = 1 
Query:    7 GIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKTCLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNL 540
            GI+RC+RCRTYINP+V W++NGRQWRCN+CG VN+ P SY CHL+ DG R DR ERPEL K SVE+ AP+EYM+RPPQ PVY+FV+DVS  AVASG++  AA TIK CLD LPG  RT VGF  FDSSVHF+NLK+ LSQPQML VPDL E FLP+PDDLLVNL ESR+VVD LLD L
Sbjct:  181 GIIRCRRCRTYINPFVSWVNNGRQWRCNICGYVNEVPQSYFCHLNTDGTRKDRNERPELCKGSVEIQAPAEYMLRPPQAPVYVFVLDVSAGAVASGVLQTAAATIKACLDKLPGAPRTQVGFIAFDSSVHFFNLKATLSQPQMLTVPDLAELFLPLPDDLLVNLHESRAVVDALLDAL 358
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BLAST of mRNA_E-fasciculatus_F_contig15857.4017.1 vs. uniprot
Match: A0A836CAX8_9STRA (Sec23/Sec24 trunk domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX8_9STRA)

HSP 1 Score: 265 bits (677), Expect = 1.920e-80
Identity = 126/182 (69.23%), Postives = 144/182 (79.12%), Query Frame = 1 
Query:    4 QGIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKTCLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNLAQV 549
            QGI+RCKRCRTYINP+V W++NGRQWRCNVCGMVND P SY CHLD +G R DR +RPEL   SVE+ AP+EYMVRPP  PVY FVIDVS  AV +GMV  A   IK CLD +PG+ER+  G  TFD S+HFYNLKS LSQPQMLVV D+ + FLP PDDLLVNL+ESR+VVD LLD L Q+
Sbjct:  189 QGIVRCKRCRTYINPFVSWMNNGRQWRCNVCGMVNDVPTSYFCHLDANGMRRDRDQRPELAYGSVEIQAPAEYMVRPPVAPVYFFVIDVSANAVNTGMVAAAVAAIKACLDRVPGDERSQFGLITFDGSIHFYNLKSTLSQPQMLVVSDISDLFLPCPDDLLVNLAESRAVVDALLDALPQM 370
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BLAST of mRNA_E-fasciculatus_F_contig15857.4017.1 vs. uniprot
Match: A0A8J2SWF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWF0_9STRA)

HSP 1 Score: 268 bits (685), Expect = 3.400e-80
Identity = 123/181 (67.96%), Postives = 148/181 (81.77%), Query Frame = 1 
Query:    7 GIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKTCLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNLAQV 549
            GI+RCK+CR Y+NP+V W++NGRQWRCNVCG  ND P SY C LD+ GRR DR +RPEL K SVE+VAP EYMVRPPQPPVY+F +DVS P+VASG+V+VAA TIK CLD+LPG  RT V   T+DSSVHFYNLK++L QP ML VPDL + F+P+PDDLLVNL+ESR  +D LLD+L Q+
Sbjct:  517 GIVRCKKCRAYVNPFVAWVNNGRQWRCNVCGFSNDVPNSYFCQLDERGRRRDRDQRPELSKGSVELVAPGEYMVRPPQPPVYVFAVDVSAPSVASGLVNVAASTIKKCLDSLPGAPRTQVAVVTYDSSVHFYNLKASLKQPSMLTVPDLTDLFVPLPDDLLVNLAESRESIDMLLDSLPQM 697
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BLAST of mRNA_E-fasciculatus_F_contig15857.4017.1 vs. uniprot
Match: A0A5D6Y6G2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6G2_9STRA)

HSP 1 Score: 265 bits (677), Expect = 1.340e-79
Identity = 121/183 (66.12%), Postives = 151/183 (82.51%), Query Frame = 1 
Query:    1 PQGIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKTCLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNLAQV 549
            P G++RC+ CRTYINP+V W+ NGR+WRCN+CG+ ND P+SY CHL+ + +R DRAERPEL   SVE+VAPSEYM+RPPQPP YMFV+DVS  AV SG VHVAA+TIK  LDNLPG  RT VGF T+DSS+HFYNLK+ L  PQM+V+ DLDE F+P+PD+LLVNLS+SR +++TLLD+L  +
Sbjct:  355 PSGVVRCRHCRTYINPFVQWVDNGRRWRCNLCGVANDVPSSYFCHLNANQQRQDRAERPEL-MGSVEIVAPSEYMMRPPQPPCYMFVLDVSATAVQSGAVHVAAQTIKEQLDNLPGAPRTRVGFVTYDSSIHFYNLKATLKSPQMMVIADLDELFIPIPDELLVNLSDSREIIETLLDSLPTI 536
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BLAST of mRNA_E-fasciculatus_F_contig15857.4017.1 vs. uniprot
Match: A0A2D4BP64_PYTIN (Putative vesicle coat complex COPII subunit SEC24/subunit SFB2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BP64_PYTIN)

HSP 1 Score: 265 bits (678), Expect = 1.540e-79
Identity = 121/183 (66.12%), Postives = 148/183 (80.87%), Query Frame = 1 
Query:    1 PQGIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKTCLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNLAQV 549
            P G++RC+ CRTY+NP+V W+ NGR+WRCN+CG+ ND P+SY CHL  + +R DR ERPEL   SVE+VAPSEYM+RPPQPP YMFVIDVS PAV+SG V +A ETIK  LDNLPG  RT VGF T+DS++HFYNLKS L  PQM+V+ DL+E F+P+PDDLLVNLS+SR VVD LLD+L  +
Sbjct:  406 PTGVVRCRHCRTYVNPFVQWVDNGRRWRCNLCGVSNDVPSSYFCHLGPNQQRQDREERPELNCGSVEIVAPSEYMMRPPQPPCYMFVIDVSAPAVSSGAVQIAVETIKEQLDNLPGAPRTRVGFLTYDSTIHFYNLKSTLKTPQMMVIADLEELFIPIPDDLLVNLSDSREVVDALLDSLPAI 588
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BLAST of mRNA_E-fasciculatus_F_contig15857.4017.1 vs. uniprot
Match: A0A2G5CTN9_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CTN9_AQUCA)

HSP 1 Score: 263 bits (672), Expect = 4.570e-79
Identity = 119/180 (66.11%), Postives = 147/180 (81.67%), Query Frame = 1 
Query:    1 PQGIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKTCLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNL 540
            P GI+RC+RCRTY+NPYV +   GR+WRCN+C ++ND P  Y CHLD +GRRSD  +RPEL K SVE VAP+EYMVRPP PP+Y F+IDVS  AV SGM+ + A TIK+CLD LPG  RT +GF TFDS++HFYN+KS+L+QPQM+VV DLD+ F+P+PDDLLVNLSESR+VVD  LD+L
Sbjct:  333 PTGIIRCRRCRTYVNPYVTFADGGRKWRCNICALLNDVPGEYFCHLDVNGRRSDADQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSVTAVRSGMLEIVARTIKSCLDTLPGNPRTQIGFITFDSTLHFYNMKSSLTQPQMMVVSDLDDIFVPLPDDLLVNLSESRNVVDVFLDSL 512
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BLAST of mRNA_E-fasciculatus_F_contig15857.4017.1 vs. uniprot
Match: A0A7S4D505_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D505_HETAK)

HSP 1 Score: 257 bits (657), Expect = 8.350e-79
Identity = 120/178 (67.42%), Postives = 142/178 (79.78%), Query Frame = 1 
Query:    7 GIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKTCLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNL 540
            GI+RCKRCRTYINP+V W+ NGR+WRCN+CGMVN+ P +Y CHLD DG+R DR +RPEL K SVE VAP EYMVRPPQPPVY FVIDVS  A  +G V  A  TI+ CL +LPG  RT VGF T+DS+VHFYNLK++LSQPQ  VV DL + FLP P+DLLVNL ESR+VV+ LL++L
Sbjct:   39 GIVRCKRCRTYINPFVSWVENGRRWRCNMCGMVNEVPTAYFCHLDADGQRRDREQRPELCKGSVEFVAPGEYMVRPPQPPVYFFVIDVSAQAAQNGSVAAACATIRRCLSDLPGSPRTQVGFVTYDSTVHFYNLKASLSQPQCYVVSDLADVFLPCPEDLLVNLQESRAVVEALLESL 216
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BLAST of mRNA_E-fasciculatus_F_contig15857.4017.1 vs. uniprot
Match: A0A813A2P3_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A2P3_SYMMI)

HSP 1 Score: 239 bits (611), Expect = 6.230e-78
Identity = 108/172 (62.79%), Postives = 136/172 (79.07%), Query Frame = 1 
Query:    7 GIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKTCLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVD 522
            GI+RCKRCRTYINP+V W+ NGR+WRCN+CGM+ND P SY  HLDQ+G+R D+ +RPEL + SVE +AP +YMVRPPQPPVY FVIDV+  A +SGM+     +I+  LD+LPG  R  VGF TFDSS+HFYNLKS+L  PQMLVV D+ +  +P P+DLLVNLS+SR +V+
Sbjct:   21 GIVRCKRCRTYINPFVSWVDNGRRWRCNICGMLNDVPTSYFSHLDQNGQRRDKDQRPELSRCSVEFIAPGDYMVRPPQPPVYFFVIDVTSGAGSSGMLSHVVSSIRRSLDDLPGNPRAHVGFITFDSSIHFYNLKSSLKAPQMLVVSDITDVIMPSPEDLLVNLSDSREIVE 192
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BLAST of mRNA_E-fasciculatus_F_contig15857.4017.1 vs. uniprot
Match: A0A371EHU7_MUCPR (Protein transport protein Sec24-like (Fragment) n=2 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371EHU7_MUCPR)

HSP 1 Score: 248 bits (632), Expect = 7.550e-78
Identity = 114/180 (63.33%), Postives = 144/180 (80.00%), Query Frame = 1 
Query:    1 PQGIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYQCHLDQDGRRSDRAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKTCLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNL 540
            P  ++RC+RCRTY+NPY+ +   GR++RCNVC ++ND P+ Y   LD  G+R D  +RPEL K ++E VAP+EYMVRPP PPVY F+IDVS  AV SGM+ V A TIK+CLD LPG  RT +GF TFDS++HFYN+KS+L+QPQMLVV DLD+ F+P+PDDLLVNLSESRSVV+T LD+L
Sbjct:  120 PASVVRCRRCRTYVNPYMTFTEAGRKYRCNVCTLLNDVPSEYYAQLDATGKRVDINQRPELTKGTIEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVANTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVETFLDSL 299
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15857.4017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPJ3_ECTSI1.250e-12098.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2W394_9STRA2.130e-8571.35Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A836CAX8_9STRA1.920e-8069.23Sec23/Sec24 trunk domain-containing protein n=1 Ta... [more]
A0A8J2SWF0_9STRA3.400e-8067.96Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5D6Y6G2_9STRA1.340e-7966.12Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BP64_PYTIN1.540e-7966.12Putative vesicle coat complex COPII subunit SEC24/... [more]
A0A2G5CTN9_AQUCA4.570e-7966.11Uncharacterized protein n=1 Tax=Aquilegia coerulea... [more]
A0A7S4D505_HETAK8.350e-7967.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A813A2P3_SYMMI6.230e-7862.79Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A371EHU7_MUCPR7.550e-7863.33Protein transport protein Sec24-like (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15857contigE-fasciculatus_F_contig15857:71..1688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.2
Seed ortholog evalue2.2e-99
Seed eggNOG ortholog2880.D7FPJ3
Preferred nameSEC24B
KEGG koko:K14007
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0022607,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0034613,GO:0034622,GO:0035459,GO:0042175,GO:0042277,GO:0042592,GO:0042632,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045714,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048475,GO:0048518,GO:0048522,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0055088,GO:0055092,GO:0060255,GO:0061024,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070971,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.ER to Golgi vesicle-mediated transport
EggNOG OGsCOG5028@1,KOG1985@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size558
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15857.4017.1prot_E-fasciculatus_F_contig15857.4017.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15857 71..1676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928053.2925508-CDS-E-fasciculatus_F_contig15857:70..2651622928053.2925508-CDS-E-fasciculatus_F_contig15857:70..265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15857 71..265 -
1695995804.6522505-CDS-E-fasciculatus_F_contig15857:70..2651695995804.6522505-CDS-E-fasciculatus_F_contig15857:70..265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15857 71..265 -
1622928053.3074722-CDS-E-fasciculatus_F_contig15857:790..9491622928053.3074722-CDS-E-fasciculatus_F_contig15857:790..949Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15857 791..949 -
1695995804.6628003-CDS-E-fasciculatus_F_contig15857:790..9491695995804.6628003-CDS-E-fasciculatus_F_contig15857:790..949Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15857 791..949 -
1622928053.3219447-CDS-E-fasciculatus_F_contig15857:1484..16761622928053.3219447-CDS-E-fasciculatus_F_contig15857:1484..1676Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15857 1485..1676 -
1695995804.6710284-CDS-E-fasciculatus_F_contig15857:1484..16761695995804.6710284-CDS-E-fasciculatus_F_contig15857:1484..1676Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15857 1485..1676 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928053.3371024-UTR-E-fasciculatus_F_contig15857:1676..16881622928053.3371024-UTR-E-fasciculatus_F_contig15857:1676..1688Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15857 1677..1688 -
1695995804.6818042-UTR-E-fasciculatus_F_contig15857:1676..16881695995804.6818042-UTR-E-fasciculatus_F_contig15857:1676..1688Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15857 1677..1688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15857.4017.1

>prot_E-fasciculatus_F_contig15857.4017.1 ID=prot_E-fasciculatus_F_contig15857.4017.1|Name=mRNA_E-fasciculatus_F_contig15857.4017.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=182bp
MRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYQCHLDQDGRRSD
RAERPELGKASVEMVAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAA
ETIKTCLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEP
FLPVPDDLLVNLSESRSVVDTLLDNLAQVGN*
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mRNA from alignment at E-fasciculatus_F_contig15857:71..1688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15857.4017.1 ID=mRNA_E-fasciculatus_F_contig15857.4017.1|Name=mRNA_E-fasciculatus_F_contig15857.4017.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15857:71..1688- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACAGGGCATCATGCGGTGCAAGCGATGCCGCACGTACATCAACCCGTA
CGTGGGCTGGCTGAGCAACGGCCGTCAGTGGAGGTGTAACGTCTGCGGGA
TGGTCAACGACACCCCGGCTTCGTACCAATGTCACCTGGATCAGGATGGG
CGCAGGTCGGACAGGGCGGAGCGCCCAGAGCTCGGCAAGGCCAGCGTGGA
AATGGTAAGAATGCGTGTGCATAGATGCTGATACGCAGCACCAAGAGATT
GATGCCATCCGTCGTGCTGTATGTACCGTGCACCGTCTGTCGGTGCCGCG
AGTGGCGGTGGCTGATAAGTTGTCCACCTGGACAGACGTTTGGCATGGCG
TCGAGTATTCCGTGCACTTCGGGTGTCCACAGCCCTGAGTGCTTGCCACC
TCACCCTCCTGATATTGGCCGGCAAGCCTCCCAGCAGTCAGTGAGCCCCC
CGTGCTCTTCTAGCCCCGTGGCCTTGAAGTGTCTCTTCCATGCTTAAGGA
CTCCCAATGGCCTTTTGTATTTTTCCTAGTACCTCTCCATTCACACTCGT
GTTCCTTCCTGCTATTCGAAATGACCAACACATATATAGGCCGAAACATT
ACGAAGGTCTTTGTTAACTTTTCCTGTGTCTTCCGCCTAGTTTTCCAACG
GCGAAGACCGTCAACAGTTGTCGCCCCGTTCACACCCCTACTTGCCTGAC
CACCCCCCCCCCGCTCGCGACCGGCCTAACCTTACCAAGGTGGCGCCTTC
GGAGTACATGGTGCGGCCGCCGCAGCCCCCGGTGTACATGTTCGTGATTG
ACGTGTCCCAGCCAGCAGTGGCGAGCGGCATGGTGCACGTTGCCGCGGAG
ACGATCAAGACGTGTCTGGACAACCTTCCGGGGGAGGAACGCACCATGGT
AAGTCGGTGGGGAAAGCCCTGGTAAGTCTGCGTGGAAACCCATGGGCAGT
CCATGTAGAAACCCCATGGTAAGTCGGTGTGGAATCCCCGTCGGCAAAGC
TTTGCTAGATGTGGCCGGAAGCTCTGTGCGAAAACTACTACTCAGTTCAA
TTTATTGTACAGGGCTGGGTAGGCTCGGTACTGGAGGTACTCCAAAATCC
AAAATCCAAAGTCAAAATCGAACTTGAATTAGCCGAAGATGAGAGAAATA
CATTTTCTGAGTTTCGGGCAAAACTCGGTTTTGATTAACCAAGAAATAAA
GCCGGGTGGACTTTCTCATGCTCAGACAATCGAAATAGTAACATTCATTT
GATTATTGGCCCTTTCCCGCCCCAAAGAGCATATAGATATTTATACCAAC
AGTCGTACGATGATATTCAGCGAGCGAAGTCCAGGGTGCCCCCTTGAAAT
GCTGCATCCCCCCTGAAAATCGCTCATCGCCATCTTCTTCCCCCGCCCTC
CGTACATGCGCAAAATAATCCAGGTGGGCTTCTGCACGTTCGACAGCAGC
GTACACTTCTACAATCTCAAGTCCAACCTGTCTCAGCCCCAGATGCTGGT
GGTGCCCGACCTCGACGAGCCCTTTCTGCCGGTGCCCGACGACCTCTTGG
TCAACCTTAGCGAGAGCCGCAGCGTGGTGGACACTCTTCTCGACAACCTC
GCCCAGGTGGGTAACTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15857:71..1688-

>mRNA_E-fasciculatus_F_contig15857.4017.1 ID=mRNA_E-fasciculatus_F_contig15857.4017.1|Name=mRNA_E-fasciculatus_F_contig15857.4017.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1092bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15857:71..1688- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGTGCAAGCGATGCCGCACGTACATCAACCCGTACGTGGGCTGGCT
GAGCAACGGCCGTCAGTGGAGGTGTAACGTCTGCGGGATGGTCAACGACA
CCCCGGCTTCGTACCAATGTCACCTGGATCAGGATGGGCGCAGGTCGGAC
AGGGCGGAGCGCCCAGAGCTCGGCAAGGCCAGCGTGGAAATGATGCGGTG
CAAGCGATGCCGCACGTACATCAACCCGTACGTGGGCTGGCTGAGCAACG
GCCGTCAGTGGAGGTGTAACGTCTGCGGGATGGTCAACGACACCCCGGCT
TCGTACCAATGTCACCTGGATCAGGATGGGCGCAGGTCGGACAGGGCGGA
GCGCCCAGAGCTCGGCAAGGCCAGCGTGGAAATGGTGGCGCCTTCGGAGT
ACATGGTGCGGCCGCCGCAGCCCCCGGTGTACATGTTCGTGATTGACGTG
TCCCAGCCAGCAGTGGCGAGCGGCATGGTGCACGTTGCCGCGGAGACGAT
CAAGACGTGTCTGGACAACCTTCCGGGGGAGGAACGCACCATGGTGGCGC
CTTCGGAGTACATGGTGCGGCCGCCGCAGCCCCCGGTGTACATGTTCGTG
ATTGACGTGTCCCAGCCAGCAGTGGCGAGCGGCATGGTGCACGTTGCCGC
GGAGACGATCAAGACGTGTCTGGACAACCTTCCGGGGGAGGAACGCACCA
TGGTGGGCTTCTGCACGTTCGACAGCAGCGTACACTTCTACAATCTCAAG
TCCAACCTGTCTCAGCCCCAGATGCTGGTGGTGCCCGACCTCGACGAGCC
CTTTCTGCCGGTGCCCGACGACCTCTTGGTCAACCTTAGCGAGAGCCGCA
GCGTGGTGGACACTCTTCTCGACAACCTCGCCCAGGTGGGTAACTGAGTG
GGCTTCTGCACGTTCGACAGCAGCGTACACTTCTACAATCTCAAGTCCAA
CCTGTCTCAGCCCCAGATGCTGGTGGTGCCCGACCTCGACGAGCCCTTTC
TGCCGGTGCCCGACGACCTCTTGGTCAACCTTAGCGAGAGCCGCAGCGTG
GTGGACACTCTTCTCGACAACCTCGCCCAGGTGGGTAACTGA
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