mRNA_E-fasciculatus_F_contig1585.4015.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1585.4015.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI) HSP 1 Score: 133 bits (334), Expect = 9.890e-34 Identity = 73/152 (48.03%), Postives = 92/152 (60.53%), Query Frame = 2
Query: 128 MLLLGVALGQSGDPFFVGCFSVDTDTRTFNPVVISDEMTAEVCSQICAGSDFYGIQYSVECWCIDSID---NIGSPCD---------SCGDSDCIIVYKDEDITLDHYRGCYSDPADNRILEPEGSSDNMTAEACASTCLGSAFYGTQYSEE 547
MLLLGVA+GQS DP ++GCFS D+R F+ MTA VCS +CA S FYG QYS ECWC D++D N CD +CG + VY++ D + Y GCYSDPAD+RI E +SD+MT+E C C +YGTQYS +
Sbjct: 1 MLLLGVAVGQSDDPSYLGCFSDPADSRVFDTQYSDSAMTAAVCSVLCASSAFYGTQYSSECWCGDNVDYDANGEGVCDMACSGDSSQTCGGFYAMSVYENPDDS--GYLGCYSDPADSRIFELVATSDDMTSEICLGNCGAYQYYGTQYSTQ 150
BLAST of mRNA_E-fasciculatus_F_contig1585.4015.1 vs. uniprot
Match: D7G4P0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P0_ECTSI) HSP 1 Score: 116 bits (291), Expect = 6.080e-29 Identity = 66/141 (46.81%), Postives = 83/141 (58.87%), Query Frame = 2
Query: 173 FVGCFSVDTDTRTFNPVVISDEMTAEVCSQICAGSDFYGIQYSVECWCID---SIDNIGS------PC-----DSCGDSDCIIVYK-DEDITLDH-YRGCYSDPADNRILEPEGSSDNMTAEACASTCLGSAFYGTQYSEE 547
++GCFS D R F V SD+MT EVCS C+ +YG QYS ECWC D + D G+ PC + CG + VY+ D +I +D YRGCYSDP NR+ + SSD MTA+ CA+ C SAFYGTQYS +
Sbjct: 74 YLGCFSDPADNRIFELVTSSDDMTEEVCSGHCSAYPYYGTQYSTECWCGDGETAYDTNGASEECVMPCAGDASEICGGPYSMSVYQNDVEIPVDPAYRGCYSDPGTNRVFVQDASSDEMTADQCATQCADSAFYGTQYSSQ 214
BLAST of mRNA_E-fasciculatus_F_contig1585.4015.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 120 bits (302), Expect = 7.320e-29 Identity = 66/142 (46.48%), Postives = 83/142 (58.45%), Query Frame = 2
Query: 173 FVGCFSVDTDTRTFNPVVISDEMTAEVCSQICAGSDFYGIQYSVECWC----IDSIDNIGSPCD---------SCGDSDCIIVYKDE----DITLDHYRGCYSDPADNRILEPEGSSDNMTAEACASTCLGSAFYGTQYSEE 547
F+GCFS D+R F + S MTAEVCS+ CAGS +YG QYS ECWC D N CD +CG + +Y+ + + Y GCYSDPAD+R+ E + SSD+MTAE C+ C GSA+YGTQYS E
Sbjct: 98 FLGCFSDPADSRVFVQEISSASMTAEVCSEACAGSAYYGTQYSTECWCGAEGADYDANGAGVCDMPCGGDAGETCGGFYAMSIYEHDVDGGESDDPSYLGCYSDPADSRVFEQKISSDSMTAEVCSEACAGSAYYGTQYSTE 239
BLAST of mRNA_E-fasciculatus_F_contig1585.4015.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE) HSP 1 Score: 120 bits (300), Expect = 1.630e-28 Identity = 65/142 (45.77%), Postives = 86/142 (60.56%), Query Frame = 2
Query: 164 DPFFVGCFSVDTDTRTFNPVVISDEMTAEVCSQICAGSDFYGIQYSVECWCIDSID---NIGSPCDS---------CGDSDCIIVYKDEDI-TLD-HYRGCYSDPADNRILEPEGSSDNMTAEACASTCLGSAFYGTQYSEE 547
DP ++GC++ D+R F+ V +D+MT+E C C +YG QYS +CWC D+ D N CD CG + VY+++D+ +D YRGCYSDPAD+RI GSSD MTAE CA+ C SAFYGTQYS +
Sbjct: 238 DPSYLGCYADPADSRIFDLVATADDMTSENCLGNCGAYQYYGTQYSTQCWCGDNADYDANGAGECDMACSGDSSEICGGFYSMSVYENDDVDAVDLSYRGCYSDPADSRIFVEAGSSDAMTAEYCATLCPDSAFYGTQYSTQ 379
BLAST of mRNA_E-fasciculatus_F_contig1585.4015.1 vs. uniprot
Match: A0A6H5KQV8_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV8_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.100e-26 Identity = 64/144 (44.44%), Postives = 83/144 (57.64%), Query Frame = 2
Query: 152 GQSGDPFFVGCFSVDTDTRTFNPVVISDEMTAEVCSQICAGSDFYGIQYSVECWCIDSIDNIGSPCDS--------CGDSDCIIVYK----DEDITLDHYRGCYSDPADNRILEPEGSSDNMTAEACASTCLGSAFYGTQYSEE 547
G+S DP ++GC+S D+R F + SD MTAEVCS+ CAGS +YG QYS E S +P D+ CG + +Y+ D + Y GCYSDPAD+R+ SS MTAE C++ C GSA+YGTQYS E
Sbjct: 70 GESDDPSYLGCYSDPADSRVFEQKISSDSMTAEVCSEACAGSAYYGTQYSTEV----SGFRYNTPSDNHEEGHDEICGGFYAMSIYENDADDGESDDPSYLGCYSDPADSRVFVQGVSSAAMTAEICSAACAGSAYYGTQYSVE 209
BLAST of mRNA_E-fasciculatus_F_contig1585.4015.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE) HSP 1 Score: 109 bits (273), Expect = 4.770e-26 Identity = 69/148 (46.62%), Postives = 83/148 (56.08%), Query Frame = 2
Query: 164 DPFFVGCFSVDTDTRTFNPVVISDEMTAEVCSQICAGSDFYGIQYSVECWCID-----SIDNIG---SPC-----DSCGDSDCIIVYKDEDITLDHYRGCYSDPADNRILEPEGSSDNMTAEA-------CASTCLGSAFYGTQYSEE 547
DP + GC+S R F SDEMTAEVC+ C S FYG QYS ECWC D S++ +G PC +SCG S + VY + Y GC+SDPAD R+ E S+ MTAEA CAS C GSA+YGTQYS+E
Sbjct: 88 DPAYRGCYSDPGTNRVFVQDDSSDEMTAEVCAAQCDESAFYGTQYSRECWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVYAQDPA----YLGCFSDPADGRMFVWESSNTAMTAEASRRGRQACASRCSGSAYYGTQYSQE 231
BLAST of mRNA_E-fasciculatus_F_contig1585.4015.1 vs. uniprot
Match: A0A6H5KQN6_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN6_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 2.940e-17 Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 2
Query: 101 MHGLSLVLPMLLLGVALGQSGDPFFVGCFSVDTDTRTFNPVVISDEMTAEVCSQICAGSDFYGIQYSVE 307
MH L L LP LLLGVA+GQS DP ++GCFS + R F + MTA+VCS++C+GSDFYG QYS E
Sbjct: 1 MHLLPLALPTLLLGVAVGQSDDPSYLGCFSDPAENRVFEWQSSTSAMTADVCSELCSGSDFYGTQYSTE 69
BLAST of mRNA_E-fasciculatus_F_contig1585.4015.1 vs. uniprot
Match: A0A698XLC6_9EURO (Uncharacterized protein n=2 Tax=Eurotiales TaxID=5042 RepID=A0A698XLC6_9EURO) HSP 1 Score: 78.2 bits (191), Expect = 1.630e-13 Identity = 47/149 (31.54%), Postives = 75/149 (50.34%), Query Frame = 2
Query: 173 FVGCFSVDTDTRTFNPVVISDE-MTAEVCSQICAGSDFYGIQYSVECWCIDSIDNIGS---------PC-----DSCGDSDCIIVYKDEDITLD--------HYRGCYSDPADNRILEPEGSSDN-MTAEACASTCLGSAFYGTQYSEE 547
+VGC++ D D+RTF+ SD MT CS C+G ++G +Y+ +C+C ++ + + PC ++CG D + VY + + Y GCY+D A R L + N MT EACA+ C G+ ++G +Y E
Sbjct: 542 YVGCYTDDVDSRTFSAATNSDNNMTLSECSNFCSGYQYFGTEYTTQCFCGTTLSSSSTEAAEAECSMPCGGDSTETCGGPDRLSVYANNNYVTPGGATIPGYQYVGCYNDTAAARSLSGTYTYTNDMTVEACATFCNGATYFGVEYYNE 690
BLAST of mRNA_E-fasciculatus_F_contig1585.4015.1 vs. uniprot
Match: A0A6H5JVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT8_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 3.380e-13 Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 2
Query: 164 DPFFVGCFSVDTDTRTFNPVVISDEMTAEVCSQICA--GSDFYGIQYSVECWCIDSIDNIGS--------PCDSCGDSDCIIVYKDEDITLD-HYRGCYSDPADNRILEPEGSSDNMTAEA 493
DP + GCF+ D R F+ ++T E C +C+ G FYG+QYS++CWC D + PC C Y + ++D Y GC+SD AD+RI E SS++MTAEA
Sbjct: 225 DPSYRGCFADTADNRVFHQTTSDFDLTTEHCGLLCSIEGFSFYGLQYSIQCWCGDHNTEYSANGDGVCDMPCGGDAYDMCGGFYSMDIYSIDPSYLGCFSDLADSRIFVWEASSNDMTAEA 345
BLAST of mRNA_E-fasciculatus_F_contig1585.4015.1 vs. uniprot
Match: A0A093VLC3_TALMA (Putative fungistatic metabolite n=3 Tax=Talaromyces marneffei TaxID=37727 RepID=A0A093VLC3_TALMA) HSP 1 Score: 76.3 bits (186), Expect = 7.550e-13 Identity = 47/149 (31.54%), Postives = 78/149 (52.35%), Query Frame = 2
Query: 173 FVGCFSVDTDTRTFNPVVISDE-MTAEVCSQICAGSDFYGIQYSVECWCIDSIDNIG---------SPC-----DSCGDSDCIIVYKDEDI------TLDHYR--GCYSDPADNRILEPEGS-SDNMTAEACASTCLGSAFYGTQYSEE 547
++GC++ D ++RTF SD MT CS C+G ++G +Y+ +C+C S+ + PC + CG + + VY + + T+ +Y+ GCY+D A +R L S NMT EACA+ C G+ ++G +Y +E
Sbjct: 543 YLGCYTDDVNSRTFPSATHSDNNMTLAECSNFCSGYQYFGAEYTTQCFCGTSLSSSSIEATESECYMPCGGDSTEICGGPNRLSVYTNNNYVAPGGATIPNYQYLGCYNDTAASRSLSATYKYSSNMTVEACATFCNGATYFGVEYYDE 691 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1585.4015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1585.4015.1 >prot_E-fasciculatus_F_contig1585.4015.1 ID=prot_E-fasciculatus_F_contig1585.4015.1|Name=mRNA_E-fasciculatus_F_contig1585.4015.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=149bp MHGLSLVLPMLLLGVALGQSGDPFFVGCFSVDTDTRTFNPVVISDEMTAEback to top mRNA from alignment at E-fasciculatus_F_contig1585:11638..15024+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1585.4015.1 ID=mRNA_E-fasciculatus_F_contig1585.4015.1|Name=mRNA_E-fasciculatus_F_contig1585.4015.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3387bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1585:11638..15024+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1585:11638..15024+ >mRNA_E-fasciculatus_F_contig1585.4015.1 ID=mRNA_E-fasciculatus_F_contig1585.4015.1|Name=mRNA_E-fasciculatus_F_contig1585.4015.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1585:11638..15024+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |