mRNA_E-fasciculatus_F_contig1584.4012.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1584.4012.1 vs. uniprot
Match: D8LR82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR82_ECTSI) HSP 1 Score: 770 bits (1989), Expect = 1.450e-276 Identity = 391/426 (91.78%), Postives = 404/426 (94.84%), Query Frame = 2
Query: 302 MKVSVEVGGQSMEIPCGQGGQNVRWLALTASQRLQLMQPKGRQRMREAGDARRGFALPKAVLVKGGGNLDDPYSTISDVLEDGAEVEVFLMDAVEVDDVGAPVASEWFLKAFGSGEATKRRLNGIRAREEHEAKLASDEAAGIGSRG-MLGGFDVTVEGVAISGPLETPGEIRAATEHDWRSADIGGLVTDPKEASAVKGLLQNHLPALNQVHASLSGGRMPGGSSPAMSFQDFAHGLHRYGIMSYVRDAEAGEAKGDESSDPPDPVRTVFRNANRGNWPGDVTVLSRAQFLAALVLVARGKGGGVVEALREIVEEVLLPTHVETMSDEIGVEITSPEVQQYISDNRRLLHSVYLLYAEPFDGGALITLDHFRELMDDCGVMSAMTATTSGRAKFDFQAETCFLQVQGKPPLPSLVFTECIEAACR 1576
MKVSVEVGGQSMEIPCGQGGQNVRWLAL ASQRLQLMQPKGRQRMREAGDARRGFALPKAVLVKGGG+LDDPYSTI DVLEDGAEVEV LMDAVEVDDVGAPVASEWFLKAFGSGEATKRRLNGI AREEHEAKLASDEAAGIGSRG MLGGFDVTV+GVAISGPLETPGEIRAATEHDWRSADIGGLV DPKEA A LLQ+HLPALNQVHASLSGGRMPGGSSPAMS QDFAHGLHRYGIM YVRDA+AGEAKGDES DPPDPVR VFR+A RG+WPGDVTVLSRAQFLAALVL+ARGKGGG VE++REIVEEVLLPTH TMSDE+GVEIT PEVQ+YISDNRRLLHSVYLLYAE +GGALITL HFRELMDDCGVMSAMTATTSGRAKFDFQAETCFL+VQGKPPLPSLVFTECIEAACR
Sbjct: 1 MKVSVEVGGQSMEIPCGQGGQNVRWLALAASQRLQLMQPKGRQRMREAGDARRGFALPKAVLVKGGGSLDDPYSTIGDVLEDGAEVEVVLMDAVEVDDVGAPVASEWFLKAFGSGEATKRRLNGIHAREEHEAKLASDEAAGIGSRGIMLGGFDVTVDGVAISGPLETPGEIRAATEHDWRSADIGGLVNDPKEALAAMRLLQSHLPALNQVHASLSGGRMPGGSSPAMSLQDFAHGLHRYGIMPYVRDAQAGEAKGDESRDPPDPVRAVFRDAKRGHWPGDVTVLSRAQFLAALVLIARGKGGGTVESMREIVEEVLLPTHTLTMSDEVGVEITRPEVQRYISDNRRLLHSVYLLYAEASEGGALITLGHFRELMDDCGVMSAMTATTSGRAKFDFQAETCFLEVQGKPPLPSLVFTECIEAACR 426
BLAST of mRNA_E-fasciculatus_F_contig1584.4012.1 vs. uniprot
Match: A0A6H5KXL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL3_9PHAE) HSP 1 Score: 343 bits (881), Expect = 1.910e-111 Identity = 187/239 (78.24%), Postives = 198/239 (82.85%), Query Frame = 2
Query: 491 KGGGNLDDPYSTISDVLEDGAEVEVFLMDAVEVDDVGAPVASEWFLKAFGSGEATKRRLNGIRAREEHEAKLASDEAAGIGSRG-MLGGFDVTVEGVAISGPLETPGEIRAATEHDWRSADIGG-LVTDPKEASAVKGLLQNHLPALNQVHASLSGGRMPGGSSPAMSFQDFAHGLHRYGIMSYVRDAEAGEAKGDESSDPPDPVRTVFRNANRGNWPGDVTV-------LSRAQFLAA 1180
+GGGNLDDPYSTI DVL+DGAEVEV LMDAVEVDDVGAPVASEWFLKAFGSGEATKRRLNGIRAREEHEAKLASDEAAGIGS G MLGGFDVTVEGVAISGPLETPGEIRAA EHDWRSADIGG + +P+ AS G L V+ SGGRMPGGSSPAMSFQDFAHGLHRYGIM YVRDA+AG+AKGDE DPP+PVR VFR+A RG+WPGDVTV L R FL A
Sbjct: 21 QGGGNLDDPYSTIGDVLKDGAEVEVVLMDAVEVDDVGAPVASEWFLKAFGSGEATKRRLNGIRAREEHEAKLASDEAAGIGSHGIMLGGFDVTVEGVAISGPLETPGEIRAAMEHDWRSADIGGESLRNPRLASV--GCL---------VYRG-SGGRMPGGSSPAMSFQDFAHGLHRYGIMPYVRDAQAGDAKGDERRDPPNPVRAVFRDAKRGHWPGDVTVRMSRFALLRRGLFLTA 247
BLAST of mRNA_E-fasciculatus_F_contig1584.4012.1 vs. uniprot
Match: A0A6H5KY40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY40_9PHAE) HSP 1 Score: 186 bits (471), Expect = 1.710e-51 Identity = 91/106 (85.85%), Postives = 97/106 (91.51%), Query Frame = 2
Query: 1205 GGGVVEALREIVEEVLLPTHVETMSDEIGVEITSPEVQQYISDNRRLLHSVYLLYAEPFDGGALITLDHFRELMDDCGVMSAMTATTSGRAKFDFQAETCFLQVQG 1522
GGG VEA+REIVEEV+LPTH TMSD++GVEIT PEVQQYISDNRRLLHS +LLYAE +GGALITLDHFRELMDDCGVMSAMTATTSGRAKFDFQAETCFLQ G
Sbjct: 19 GGGTVEAMREIVEEVMLPTHTLTMSDDVGVEITRPEVQQYISDNRRLLHSAFLLYAEASEGGALITLDHFRELMDDCGVMSAMTATTSGRAKFDFQAETCFLQTTG 124
BLAST of mRNA_E-fasciculatus_F_contig1584.4012.1 vs. uniprot
Match: A0A8J2SXB3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXB3_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 3.200e-18 Identity = 137/508 (26.97%), Postives = 205/508 (40.35%), Query Frame = 2
Query: 302 MKVSVEVGG-----QSMEIPCGQGGQNVRWLALTASQRLQLM--QPKGRQRMREAG--DARRGFALPKAVLVKGGGNLDDPYSTISDVLEDGAEVEVFLMDAVEVDDVGAPVASEWFLKAFGSGEATKRRLNGIRAREE---HEAKLASDEAAGI-GSRGMLGGFDVTVEG-------------VAISGPLETPGEIRAATEHDW----RSADIGGLVTDPKEASAVKGLLQNHLPALNQVHASLSG-GRM--PGGSSPAMSFQDFAHGLHRYGIMSYVRDAEAGEAKGDESSDPPDPVRTVFRNANRGNWP-----------GDVT----VLSRAQFLAALVLVARGKGGGVVEALREI------------------------VEEVLLPTHVETM----SDEIGVEITSPEVQQYISDNRRLLHSVYLLYAEPFDGGALITLDHFRELMDDCGVMSAMTATTS-GRAKFDFQAETCFLQVQGKPP----LPSLVFTECIEAACRLA 1582
MKV V+VGG + MEIP G G Q+++WL L A+QR L+ K +R ++ D +GF LP+ ++ GG P S I DV+ +G ++V L +VE+D++ APV + W + AF G A +R GI +RE HEA + ++ A I G + + V ++G L ++ AA + DW R+ + A + LQ LN V +G GR+ P G++P +D AH H + AE A D V F A RG + VT +LSRA+F+AAL+ +AR G L E EVL HV + + + +Q + + + L + YA+ G +TL F ++ + + A G D + F QG P L +LVF E +EA C A
Sbjct: 22 MKVLVDVGGAGLSRRRMEIPVGPGTQSLKWLGLVAAQRHALLAKHTKTGRRSKQGAQPDEGQGFFLPEDMIGPGGRLA--PTSIIRDVIREGDVIQVDLQTSVELDEINAPVQTPWQVAAFECGAAGAQRRRGIESREAIAAHEASIKAEVDARIEGDERYRRAYAASALALRRHVPPPGTDYHVVVAGRLVDQADLDAALDLDWPVLERALSDLKCPVSGTASEAFRDDLQEVYGDLNAVFCLYAGLGRVGAPHGATP----RDLAHVAHACRLALVRYGAEDRRADRDR-------VHQTFEGARRGRFAEAKECDEEDDAATVTTPAALLSRAEFVAALIALARSADPGAPTLLDEAQGDDDVHGEGPKKTTRPAPSSTIDALEVLATRHVAPLLARRRESVVACFDGAAIQDAVFERQAPLRRAFDHYAD----GDGMTLAGFGSVVRASSLGELVLADEEEGDRALDDRCRAAFRGAQGAPAGVLALDALVFGEFLEAYCAAA 512 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1584.4012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1584.4012.1 >prot_E-fasciculatus_F_contig1584.4012.1 ID=prot_E-fasciculatus_F_contig1584.4012.1|Name=mRNA_E-fasciculatus_F_contig1584.4012.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=488bp MKVSVEVGGQSMEIPCGQGGQNVRWLALTASQRLQLMQPKGRQRMREAGDback to top mRNA from alignment at E-fasciculatus_F_contig1584:6094..15171+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1584.4012.1 ID=mRNA_E-fasciculatus_F_contig1584.4012.1|Name=mRNA_E-fasciculatus_F_contig1584.4012.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=9078bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1584:6094..15171+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1584:6094..15171+ >mRNA_E-fasciculatus_F_contig1584.4012.1 ID=mRNA_E-fasciculatus_F_contig1584.4012.1|Name=mRNA_E-fasciculatus_F_contig1584.4012.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2928bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1584:6094..15171+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |