mRNA_E-fasciculatus_F_contig15836.4007.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15836.4007.1
Unique NamemRNA_E-fasciculatus_F_contig15836.4007.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15836.4007.1 vs. uniprot
Match: D7G183_ECTSI (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G183_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.470e-49
Identity = 86/98 (87.76%), Postives = 93/98 (94.90%), Query Frame = 1 
Query:    1 GEPAGAKSDAARAVSEATKGAKTLQPIHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEELPRRARPPPRLMPFFLDHGRRGYLAPEV 294
            G+  GA+++ ARA SEATKGAK+L P+HLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEELPRRARPPPRLMPFFLDHGRRGYLAP+V
Sbjct:  189 GDATGAENEVARAASEATKGAKSLPPVHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEELPRRARPPPRLMPFFLDHGRRGYLAPDV 286
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BLAST of mRNA_E-fasciculatus_F_contig15836.4007.1 vs. uniprot
Match: A0A836CA06_9STRA (Ribosomal protein L18e/L15P (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA06_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.620e-27
Identity = 65/90 (72.22%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:   31 ARAVSEATKGAKTLQPIHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEE--LPRRARPPPRLMPFFLDHGRRGYLAPEV 294
            ARAV E+   A    P+HLEVS ASAGAI AVEA+GGTVTCAHFNRLALRALLKP KF    LPRRARPPPRLM  FL   +RGYL+PEV
Sbjct:  143 ARAVPESAYAA----PLHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEV 228
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BLAST of mRNA_E-fasciculatus_F_contig15836.4007.1 vs. uniprot
Match: A0A4D9D510_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D510_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.250e-27
Identity = 58/87 (66.67%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:   76 PIHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFE--------------ELPRRARPPPRLMPFFLDHGRRGYLAPEV 294
            P H+EVSRAS GAI+AVE  GGTVTC HFNRLALRALLKPE F               +LPRRARPPPRLMP +LD  RRGYL+PEV
Sbjct:  150 PFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPVLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEV 236
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BLAST of mRNA_E-fasciculatus_F_contig15836.4007.1 vs. uniprot
Match: W7U3I7_9STRA (Ribosomal protein L18e/L15P n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3I7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.660e-26
Identity = 58/87 (66.67%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:   76 PIHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFE--------------ELPRRARPPPRLMPFFLDHGRRGYLAPEV 294
            P H+EVSRAS GAI+AVE  GGTVTC HFNRLALRALLKPE F               +LPRRARPPPRLMP +LD  RRGYL+PEV
Sbjct:  240 PFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEV 326
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BLAST of mRNA_E-fasciculatus_F_contig15836.4007.1 vs. uniprot
Match: A0A8J2SDD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDD0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.050e-24
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:   79 IHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEELPRRARPPPRLMPFFLDHGRRGYLAPEV 294
            +H+EVSRASA AI+AVE  GGTVTCAH+NRLALRALLKP KFE++PRRARPPPRLM +++   +RG  +P V
Sbjct:  158 VHIEVSRASASAIKAVEDAGGTVTCAHYNRLALRALLKPHKFEQMPRRARPPPRLMRYYVSDEKRGEYSPLV 229
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BLAST of mRNA_E-fasciculatus_F_contig15836.4007.1 vs. uniprot
Match: A0A1Z5JC23_FISSO (Ribosomal_L18e/L15P domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JC23_FISSO)

HSP 1 Score: 99.8 bits (247), Expect = 1.570e-23
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:   73 QPIHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEELPRRARPPPRLMPFFLDHGRRGYLAPEV 294
            QP+HL+VSRAS  AI+AVE  GGTVT  H+NRLALRAL++PEKF+++PR ARPPP+  P++   G RGYL P+V
Sbjct:  164 QPVHLKVSRASKSAIDAVEKAGGTVTTVHYNRLALRALMRPEKFDQVPRFARPPPKYQPYYTSWGNRGYLNPQV 237
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BLAST of mRNA_E-fasciculatus_F_contig15836.4007.1 vs. uniprot
Match: A0A7S3PZE5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZE5_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.300e-22
Identity = 49/81 (60.49%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:   55 KGAKTLQ-PIHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEELPRRARPPPRLMPFFLDHGRRGYLAPEV 294
            KG + L+ P+ +E+SRAS GAI+AVEA GG +T  H+NRLALRALLKPEKF+ +P+RARPPP+LM ++ D  +RGYL+ +V
Sbjct:  177 KGKERLRTPVKIEISRASEGAIKAVEAVGGEITTVHYNRLALRALLKPEKFDIIPKRARPPPKLMQYYTDDDKRGYLSSKV 257
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BLAST of mRNA_E-fasciculatus_F_contig15836.4007.1 vs. uniprot
Match: A0A7S3XNS7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNS7_HETAK)

HSP 1 Score: 95.9 bits (237), Expect = 5.060e-22
Identity = 53/83 (63.86%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:   55 KGAKTLQ-PIHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEE--LPRRARPPPRLMPFFLDHGRRGYLAPEV 294
            KG + L+ P+HLEV  AS  AI AVEA+GG VT  ++NRL LRALLKP+KFE   +P+RA PPP+LMPF+LD  RRGYLAPE+
Sbjct:  170 KGKELLRAPVHLEVMGASREAIAAVEARGGAVTARYYNRLGLRALLKPDKFEAKGVPKRAAPPPKLMPFYLDPERRGYLAPEM 252
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BLAST of mRNA_E-fasciculatus_F_contig15836.4007.1 vs. uniprot
Match: A0A6U0WPW9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0WPW9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.920e-22
Identity = 43/73 (58.90%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   76 PIHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEELPRRARPPPRLMPFFLDHGRRGYLAPEV 294
            P+H+EVSRAS  AI A+E  GG++TC ++N +ALR+L+ PEKF+  PR ARPPP+LMPF+LD+  RG+L+PE+
Sbjct:  167 PLHVEVSRASQSAITAIEGAGGSITCVYYNPIALRSLMFPEKFQLAPRIARPPPKLMPFYLDYQNRGFLSPEI 239
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BLAST of mRNA_E-fasciculatus_F_contig15836.4007.1 vs. uniprot
Match: A0A7S1Z8D1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8D1_TRICV)

HSP 1 Score: 95.5 bits (236), Expect = 7.230e-22
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   19 KSDAARAVSEATKGAKTLQ-PIHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEELPRRARPPPRLMPFFLDHGRRGYLAPEV 294
            KS     V    KG + LQ P+ LEVSRAS  AI+AVE  GG +   H NRLAL+ALLKP KF+ +PRRA PPP+LMP++  +  RGYL+PEV
Sbjct:  160 KSSVKHGVKLLAKGRERLQSPLRLEVSRASRSAIDAVEEAGGEIATVHLNRLALKALLKPHKFDVIPRRALPPPKLMPYYTSYENRGYLSPEV 252
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15836.4007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G183_ECTSI1.470e-4987.76Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A836CA06_9STRA1.620e-2772.22Ribosomal protein L18e/L15P (Fragment) n=1 Tax=Tri... [more]
A0A4D9D510_9STRA7.250e-2766.67Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
W7U3I7_9STRA3.660e-2666.67Ribosomal protein L18e/L15P n=1 Tax=Nannochloropsi... [more]
A0A8J2SDD0_9STRA3.050e-2469.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Z5JC23_FISSO1.570e-2363.51Ribosomal_L18e/L15P domain-containing protein n=2 ... [more]
A0A7S3PZE5_9STRA1.300e-2260.49Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3XNS7_HETAK5.060e-2263.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U0WPW9_9STRA6.920e-2258.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1Z8D1_TRICV7.230e-2255.91Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15836contigE-fasciculatus_F_contig15836:383..1244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue4.7e-40
Seed eggNOG ortholog2880.D7G183
Preferred nameMRPL15
KEGG koko:K02876
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000002,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034097,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0070013,GO:0070125,GO:0070126,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0200@1,KOG0846@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L18e/L15P
Ec32 orthologEc-23_002750.1
Exons2
Model size295
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928052.2793088-CDS-E-fasciculatus_F_contig15836:382..5681622928052.2793088-CDS-E-fasciculatus_F_contig15836:382..568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15836 383..568 +
1695995804.1250377-CDS-E-fasciculatus_F_contig15836:382..5681695995804.1250377-CDS-E-fasciculatus_F_contig15836:382..568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15836 383..568 +
1622928052.295646-CDS-E-fasciculatus_F_contig15836:1136..12441622928052.295646-CDS-E-fasciculatus_F_contig15836:1136..1244Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15836 1137..1244 +
1695995804.1390882-CDS-E-fasciculatus_F_contig15836:1136..12441695995804.1390882-CDS-E-fasciculatus_F_contig15836:1136..1244Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15836 1137..1244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15836.4007.1prot_E-fasciculatus_F_contig15836.4007.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15836 383..1244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15836.4007.1

>prot_E-fasciculatus_F_contig15836.4007.1 ID=prot_E-fasciculatus_F_contig15836.4007.1|Name=mRNA_E-fasciculatus_F_contig15836.4007.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=98bp
GEPAGAKSDAARAVSEATKGAKTLQPIHLEVSRASAGAIEAVEAQGGTVT
CAHFNRLALRALLKPEKFEELPRRARPPPRLMPFFLDHGRRGYLAPEV
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mRNA from alignment at E-fasciculatus_F_contig15836:383..1244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15836.4007.1 ID=mRNA_E-fasciculatus_F_contig15836.4007.1|Name=mRNA_E-fasciculatus_F_contig15836.4007.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=862bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15836:383..1244+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGAGCCGGCCGGGGCTAAGAGCGACGCGGCCAGGGCAGTATCGGAGGC
AACCAAGGGAGCGAAGACGCTTCAGCCCATCCACCTGGAGGTTAGCCGCG
CCTCCGCGGGCGCAATTGAGGCGGTCGAGGCGCAGGGGGGCACCGTGACT
TGCGCCCATTTCAACCGCTTGGCGCTCCGGGCGCTGGTGAGAGTCTTCGT
CCTCATCCTCATGATGGTTTTGTCCTCATTATGGTTTTGTGTTCGTCCTG
TTGTCGTGGATGGTTTTTGTCGGGAACGCTCTGCTTGCAGTTGGGCAGGA
AACGTTCGCAGACGAAACACATACACATAACGAATGTGTTGCTACTGGTG
TTGAAATCTGTTGTGCCGCACTGCTCTTGGCAATGTACAGCGGTACGGTA
GCGGAACCCCCACATCTCCAGGCACTGGTCCGCCTCGGACTAAATGGACG
GCTTGAGAGTTGATTTCAGACTTTTGAACGCAGACAGGGTGATGGGGGAG
AGCCAAGGACGACCCCCCGGCCAGGATGAAGGAGCAAAAAACTCTACACA
ACCTCCCGCGAATTATTTGCGCTATCTCTATGTTCTGTTCGTTTTGAGAA
CGAAAGTGACCTTGGCACAAGGAGAGTCGGAGCATTTTTTTGTTCCCGTT
TTATTTTTTATTTTTTTTTCGCTCATGTTTTCGGTCTCATTGTTTTCGTA
CACTCATTTGTTCGGTCTCCCTGTTAATTTACGATTGCGCTGCTGGGCTT
TTAGCTCAAGCCCGAGAAGTTCGAAGAGCTCCCGAGGAGGGCACGCCCGC
CGCCGCGCCTGATGCCGTTCTTCCTCGACCACGGCCGACGGGGATACCTG
GCTCCGGAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15836:383..1244+

>mRNA_E-fasciculatus_F_contig15836.4007.1 ID=mRNA_E-fasciculatus_F_contig15836.4007.1|Name=mRNA_E-fasciculatus_F_contig15836.4007.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=588bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15836:383..1244+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGAGCCGGCCGGGGCTAAGAGCGACGCGGCCAGGGCAGTATCGGAGGC
AACCAAGGGAGCGAAGACGCTTCAGCCCATCCACCTGGAGGTTAGCCGCG
CCTCCGCGGGCGCAATTGAGGCGGTCGAGGCGCAGGGGGGCACCGTGACT
TGCGCCCATTTCAACCGCTTGGCGCTCCGGGCGCTGGGAGAGCCGGCCGG
GGCTAAGAGCGACGCGGCCAGGGCAGTATCGGAGGCAACCAAGGGAGCGA
AGACGCTTCAGCCCATCCACCTGGAGGTTAGCCGCGCCTCCGCGGGCGCA
ATTGAGGCGGTCGAGGCGCAGGGGGGCACCGTGACTTGCGCCCATTTCAA
CCGCTTGGCGCTCCGGGCGCTGCTCAAGCCCGAGAAGTTCGAAGAGCTCC
CGAGGAGGGCACGCCCGCCGCCGCGCCTGATGCCGTTCTTCCTCGACCAC
GGCCGACGGGGATACCTGGCTCCGGAGGTGCTCAAGCCCGAGAAGTTCGA
AGAGCTCCCGAGGAGGGCACGCCCGCCGCCGCGCCTGATGCCGTTCTTCC
TCGACCACGGCCGACGGGGATACCTGGCTCCGGAGGTG
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