mRNA_E-fasciculatus_F_contig1582.4001.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1582.4001.1
Unique NamemRNA_E-fasciculatus_F_contig1582.4001.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1582.4001.1 vs. uniprot
Match: A0A6H5L7K0_9PHAE (Ribosomal_L12 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K0_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.170e-36
Identity = 78/123 (63.41%), Postives = 81/123 (65.85%), Query Frame = 1 
Query:  154 MTLAASMCRGLATGGRRCRTPAPVAAWPLVKRGLDASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGRVLPAGLPPVYRPDAGNSNGGRVRFSTTAGADAATEDTSGPPPAEA 522
            MTLA SMCRGLA+GGRRCRTPAP AAWPLV+RGLD SS                                    ARGRVL AGLPPVYRPDAGN NGGRVRFSTTAGADAATEDTSGPP A+A
Sbjct:    1 MTLATSMCRGLASGGRRCRTPAPAAAWPLVQRGLDVSSKHTAVGPSSTRGCATVVAATPPAVAAAA--------ARGRVLQAGLPPVYRPDAGNGNGGRVRFSTTAGADAATEDTSGPPAAKA 115
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1582.4001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7K0_9PHAE1.170e-3663.41Ribosomal_L12 domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1582contigE-fasciculatus_F_contig1582:16066..17280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue4e-13
Seed eggNOG ortholog2880.D7FPT9
KEGG koko:K02935
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0222@1,KOG1715@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons2
Model size535
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928051.6946557-CDS-E-fasciculatus_F_contig1582:16065..163281622928051.6946557-CDS-E-fasciculatus_F_contig1582:16065..16328Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1582 16066..16328 +
1695995803.838769-CDS-E-fasciculatus_F_contig1582:16065..163281695995803.838769-CDS-E-fasciculatus_F_contig1582:16065..16328Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1582 16066..16328 +
1622928051.7098691-CDS-E-fasciculatus_F_contig1582:17008..172791622928051.7098691-CDS-E-fasciculatus_F_contig1582:17008..17279Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1582 17009..17279 +
1695995803.8538017-CDS-E-fasciculatus_F_contig1582:17008..172791695995803.8538017-CDS-E-fasciculatus_F_contig1582:17008..17279Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1582 17009..17279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1582.4001.1prot_E-fasciculatus_F_contig1582.4001.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1582 16066..17279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1582.4001.1

>prot_E-fasciculatus_F_contig1582.4001.1 ID=prot_E-fasciculatus_F_contig1582.4001.1|Name=mRNA_E-fasciculatus_F_contig1582.4001.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=178bp
HNLCSSLSKKQIAASCTRSCSAPCELQGELLLRRSLSLERPALLLITRSH
TMTLAASMCRGLATGGRRCRTPAPVAAWPLVKRGLDASSSSSSSSKHTAV
GPSSTRGCATAVVVATPPAVAAAAAARGRVLPAGLPPVYRPDAGNSNGGR
VRFSTTAGADAATEDTSGPPPAEAGKGE
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mRNA from alignment at E-fasciculatus_F_contig1582:16066..17280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1582.4001.1 ID=mRNA_E-fasciculatus_F_contig1582.4001.1|Name=mRNA_E-fasciculatus_F_contig1582.4001.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1215bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1582:16066..17280+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACAACCTCTGTAGTTCTCTCTCGAAGAAACAGATAGCTGCCAGTTGCAC
CCGGAGCTGTAGTGCACCTTGCGAGTTGCAAGGTGAGCTCTTGCTGCGCA
GGAGTCTATCGCTGGAACGGCCAGCGCTGTTGCTGATCACTCGATCACAC
ACGATGACTCTTGCGGCGTCGATGTGCAGGGGGCTTGCGACCGGGGGGCG
AAGATGTAGGACGCCAGCGCCGGTGGCGGCATGGCCACTGGTGAAACGGG
GACTAGATGCTAGGTGAGACTGCAAACAAGAAGCCGGAGGCTTCACACGG
AGCGTTCCAAGCAGCATGTTTGTGTTTAGCGCGTGCTGTCCCTCAACGGA
GTGGACTCTGTTTGCGCTTTGCGGCTTTGCGGCACGACAAGCGCGCGCTA
GAAGAGACAGACGTGCGGTGTTGGTTGCTCCACAGGGTGTATCTTGGTCG
GTTGCCTCCGGCGTCTACCGTTGAAGTGACAGGCATTCTGATAACGCACA
CGCGCTTTGCTCCCGAAGCTTCTGTTCTTGACGTGAGACGTGAGAAATGC
GGTGTTGCTTGTGGCATCACCTGTGACCGCAACTCGGGTCTCCTCCCCTG
TGTTCCATCTACAGCAGTACTGCTGCTGCTGTCCATATCATGTCATTCAG
GTATGCTAGCACAGCACGCAGGTTTCACTATAAAGTGCTCTGCTACAGCA
GTGCTACAGCAGTAGTATCCGAACAACATCCAGAGCAGCTAGGTTGCATA
CGAAAATTCGTACGTCATAGCCTAGCAGGTTCGTGTTTGTGTGTGTACAG
CTCCGATGATTGGCGTCGTTGCGTTTGTCTACAAAATGACTGCTGTTCCT
CTAGGGTTGATCAAGCTCACGTCCTGAGCGAGTCCTGCATCCAACGTCCC
ACGCGTCAAACTGCTGTCGCTTGCACCCCTTCCCACACAGCAGCAGCAGC
AGCAGCAGCAGCAGCAAGCACACAGCAGTGGGACCTTCCTCTACCAGAGG
ATGCGCTACAGCAGTGGTAGTCGCGACCCCACCAGCAGTAGCAGCAGCAG
CGGCAGCACGAGGAAGAGTGCTGCCAGCAGGACTCCCGCCCGTCTACAGA
CCAGACGCAGGCAACAGCAACGGCGGCCGAGTCAGGTTCTCGACCACCGC
TGGTGCCGATGCTGCCACCGAAGACACGAGTGGGCCGCCACCTGCAGAGG
CCGGCAAGGGGGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1582:16066..17280+

>mRNA_E-fasciculatus_F_contig1582.4001.1 ID=mRNA_E-fasciculatus_F_contig1582.4001.1|Name=mRNA_E-fasciculatus_F_contig1582.4001.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1068bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1582:16066..17280+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACAACCTCTGTAGTTCTCTCTCGAAGAAACAGATAGCTGCCAGTTGCAC
CCGGAGCTGTAGTGCACCTTGCGAGTTGCAAGGTGAGCTCTTGCTGCGCA
GGAGTCTATCGCTGGAACGGCCAGCGCTGTTGCTGATCACTCGATCACAC
ACGATGACTCTTGCGGCGTCGATGTGCAGGGGGCTTGCGACCGGGGGGCG
AAGATGTAGGACGCCAGCGCCGGTGGCGGCATGGCCACTGGTGAAACGGG
GACTAGATGCTAGCACAACCTCTGTAGTTCTCTCTCGAAGAAACAGATAG
CTGCCAGTTGCACCCGGAGCTGTAGTGCACCTTGCGAGTTGCAAGGTGAG
CTCTTGCTGCGCAGGAGTCTATCGCTGGAACGGCCAGCGCTGTTGCTGAT
CACTCGATCACACACGATGACTCTTGCGGCGTCGATGTGCAGGGGGCTTG
CGACCGGGGGGCGAAGATGTAGGACGCCAGCGCCGGTGGCGGCATGGCCA
CTGGTGAAACGGGGACTAGATGCTAGCAGCAGCAGCAGCAGCAGCAGCAA
GCACACAGCAGTGGGACCTTCCTCTACCAGAGGATGCGCTACAGCAGTGG
TAGTCGCGACCCCACCAGCAGTAGCAGCAGCAGCGGCAGCACGAGGAAGA
GTGCTGCCAGCAGGACTCCCGCCCGTCTACAGACCAGACGCAGGCAACAG
CAACGGCGGCCGAGTCAGGTTCTCGACCACCGCTGGTGCCGATGCTGCCA
CCGAAGACACGAGTGGGCCGCCACCTGCAGAGGCCGGCAAGGGGGAGCAG
CAGCAGCAGCAGCAGCAGCAAGCACACAGCAGTGGGACCTTCCTCTACCA
GAGGATGCGCTACAGCAGTGGTAGTCGCGACCCCACCAGCAGTAGCAGCA
GCAGCGGCAGCACGAGGAAGAGTGCTGCCAGCAGGACTCCCGCCCGTCTA
CAGACCAGACGCAGGCAACAGCAACGGCGGCCGAGTCAGGTTCTCGACCA
CCGCTGGTGCCGATGCTGCCACCGAAGACACGAGTGGGCCGCCACCTGCA
GAGGCCGGCAAGGGGGAG
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